FFCP PHASE1:Hg19::chr16:20911174..20911242,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57149 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25074 | |||
|TSSclassifier=strong | |||
|UniProt=O43325 | |||
|association_with_transcript=-314bp_to_ENST00000439021,NM_020424,uc010bwi.1,uc010bwj.2,uc010bwk.2_5end | |||
|cluster_id=chr16:20911174..20911242,+ | |||
|coexpression_cluster_id=C703 | |||
|description=CAGE_peak_4_at_LYRM1_5end | |||
|id=chr16:20911174..20911242,+ | |||
|ontology_enrichment_celltype=CL:0000222!6.19e-16!119;CL:0000680!6.54e-10!57;CL:0000056!6.54e-10!57;CL:0000355!6.54e-10!57;CL:0000183!2.24e-09!59;CL:0000187!3.01e-09!54;CL:0000220!4.82e-09!246;CL:0002321!7.45e-09!248;CL:0000055!8.53e-09!180;CL:0000136!3.06e-08!15;CL:0000393!7.15e-08!60;CL:0000211!7.15e-08!60;CL:1000449!8.01e-08!16;CL:1000497!2.74e-07!18;CL:0002518!2.74e-07!18;CL:0000192!3.03e-07!42;CL:0000514!3.03e-07!42;CL:0000144!3.66e-07!625;CL:0002371!5.06e-07!591;CL:1000507!5.95e-07!12;CL:1000494!5.95e-07!12;CL:0000213!9.19e-07!57;CL:0000215!9.19e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:1000449;3.98e-10;15!CL:0000136;4.86e-10;13!CL:1000497;6.78e-10;17!CL:0002518;6.78e-10;17!CL:1000507;5.19e-09;10!CL:1000494;5.19e-09;10!CL:0002681;4.84e-08;12!CL:0002584;4.84e-08;12!CL:0000359;5.70e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.79e-15,121;CL:0000136,2.57e-10,15;CL:0000680,3.41e-10,58;CL:0000056,3.41e-10,58;CL:0000355,3.41e-10,58;CL:1000449,4.72e-10,15;CL:1000497,8.01e-10,17;CL:0002518,8.01e-10,17;CL:0000187,2.27e-09,55;CL:0002321,6.96e-09,250;CL:1000507,7.22e-09,10;CL:1000494,7.22e-09,10;CL:0000359,1.42e-08,32;CL:0002681,5.09e-08,12;CL:0002584,5.09e-08,12;CL:0000393,6.29e-08,61;CL:0000211,6.29e-08,61;CL:0000048,6.73e-08,427;CL:0000034,1.48e-07,441;CL:0000723,2.03e-07,433;CL:0000192,2.48e-07,43;CL:0000514,2.48e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!2.42e-17!143;UBERON:0003914!7.47e-14!118;UBERON:0002100!2.31e-13!216;UBERON:0000490!3.83e-10!138;UBERON:0003104!4.62e-10!238;UBERON:0009142!4.62e-10!238;UBERON:0000914!7.83e-10!83;UBERON:0002329!7.83e-10!83;UBERON:0003077!7.83e-10!83;UBERON:0003059!7.83e-10!83;UBERON:0007282!7.83e-10!83;UBERON:0009618!7.83e-10!83;UBERON:0007285!7.83e-10!83;UBERON:0004290!1.53e-09!70;UBERON:0002417!2.42e-09!61;UBERON:0000916!2.42e-09!61;UBERON:0000926!2.55e-09!448;UBERON:0004120!2.55e-09!448;UBERON:0006603!2.55e-09!448;UBERON:0000486!1.64e-08!82;UBERON:0000080!2.29e-08!18;UBERON:0002120!2.29e-08!18;UBERON:0004875!2.29e-08!18;UBERON:0005721!2.29e-08!18;UBERON:0005754!2.29e-08!18;UBERON:0007297!2.29e-08!18;UBERON:0006555!3.78e-08!17;UBERON:0005103!3.78e-08!17;UBERON:0000083!3.78e-08!17;UBERON:0009201!3.78e-08!17;UBERON:0004819!3.78e-08!17;UBERON:0006553!3.78e-08!17;UBERON:0003074!3.78e-08!17;UBERON:0003060!3.78e-08!17;UBERON:0002385!6.26e-08!63;UBERON:0001015!6.26e-08!63;UBERON:0000383!6.26e-08!63;UBERON:0004211!8.01e-08!16;UBERON:0001285!8.01e-08!16;UBERON:0007684!8.01e-08!16;UBERON:0003220!8.01e-08!16;UBERON:0004208!8.01e-08!16;UBERON:0001134!8.81e-08!61;UBERON:0002036!8.81e-08!61;UBERON:0003082!8.81e-08!61;UBERON:0004876!1.01e-07!20;UBERON:0005172!1.47e-07!55;UBERON:0005173!1.47e-07!55;UBERON:0000483!2.78e-07!309;UBERON:0000119!2.80e-07!312;UBERON:0000481!4.06e-07!347;UBERON:0009773!5.95e-07!12;UBERON:0001231!5.95e-07!12;UBERON:0004810!5.95e-07!12;UBERON:0003887!6.39e-07!21;UBERON:0002049!7.18e-07!79;UBERON:0007798!7.18e-07!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.98e-10;15!UBERON:0004819;3.98e-10;15!UBERON:0001285;3.98e-10;15!UBERON:0007684;3.98e-10;15!UBERON:0004211;5.19e-09;10!UBERON:0009773;5.19e-09;10!UBERON:0001231;5.19e-09;10!UBERON:0004810;5.19e-09;10!UBERON:0001225;4.84e-08;12!UBERON:0008987;4.84e-08;12!UBERON:0002113;1.32e-07;24!UBERON:0011143;1.32e-07;24!UBERON:0004573;6.19e-07;33!UBERON:0004571;6.19e-07;33!UBERON:0001851;6.30e-07;15!UBERON:0000353;9.51e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,3.94e-18,160;UBERON:0009142,3.94e-18,160;UBERON:0002100,5.67e-17,199;UBERON:0005256,3.67e-16,122;UBERON:0003914,3.99e-15,117;UBERON:0007503,1.01e-13,78;UBERON:0000490,5.12e-12,148;UBERON:0002417,2.68e-11,60;UBERON:0000916,2.68e-11,60;UBERON:0002329,3.35e-11,71;UBERON:0003059,3.35e-11,71;UBERON:0007282,3.35e-11,71;UBERON:0004290,3.35e-11,71;UBERON:0009618,3.35e-11,71;UBERON:0007524,6.51e-11,73;UBERON:0003077,8.05e-11,72;UBERON:0007285,8.05e-11,72;UBERON:0006555,1.80e-10,16;UBERON:0004819,1.80e-10,16;UBERON:0004211,4.72e-10,15;UBERON:0009773,4.72e-10,15;UBERON:0001231,4.72e-10,15;UBERON:0001285,4.72e-10,15;UBERON:0007684,4.72e-10,15;UBERON:0004208,4.72e-10,15;UBERON:0000486,1.87e-09,83;UBERON:0005172,5.43e-09,54;UBERON:0005173,5.43e-09,54;UBERON:0004810,7.22e-09,10;UBERON:0002385,1.07e-08,64;UBERON:0001015,1.07e-08,64;UBERON:0000383,1.07e-08,64;UBERON:0001134,1.13e-08,62;UBERON:0002036,1.13e-08,62;UBERON:0003082,1.13e-08,62;UBERON:0002113,2.84e-08,26;UBERON:0003918,2.84e-08,26;UBERON:0011143,2.84e-08,26;UBERON:0005095,2.84e-08,26;UBERON:0007687,2.84e-08,26;UBERON:0001225,5.09e-08,12;UBERON:0008987,5.09e-08,12;UBERON:0009569,2.25e-07,112;UBERON:0001637,2.50e-07,42;UBERON:0003509,2.50e-07,42;UBERON:0004572,2.50e-07,42;UBERON:0004573,2.80e-07,33;UBERON:0004571,2.80e-07,33;UBERON:0001851,6.38e-07,15;UBERON:0000353,9.12e-07,15 | |||
|phase1_expression=2.72517568905835,3.8538094300377,5.21531295155093,2.00146596706261,2.68176656656373,3.48935409640147,10.1319951267324,3.15859936713415,5.48489819219661,2.45733936501509,1.39560233594486,1.52908960491121,0.791300934685361,0.618831764800233,0.331397375727916,3.36162573225888,3.61616716814386,1.46062018077475,1.46379839637152,0.246242116153576,0.612002073732759,0,0,0.273748850145768,0.502170558379211,2.8272960126742,3.28402357799783,3.46327437780189,0.786728553697808,1.15148819429164,0.464448369948228,0,0,0.369754010166788,0.46480320348181,0.426507697462265,0.587200878669695,1.10799081706375,0.401088894940283,0.434021741431704,0.223915474239924,0,0,0,0,0.242584061187816,0.697287110717054,0.822335776043652,0.619412741790207,0.863077176966451,1.0246428261164,0.709446689665756,1.72372840368309,0.645484683583826,0,0.564727018627814,0,0.449446968890169,3.06083892370903,1.60464513538047,3.83602275479425,1.9791078011203,0.398927315243264,0,2.61188314765726,0.56738522469114,0.622822248995575,0.502497330513487,1.0429658368404,0.868755378820466,0.605399502633369,1.84138817993782,1.26584954976354,0,0,0,0,0.300353785683013,0.16072558669708,0,0,0.182664153764634,0,0,0,0.426730222566507,0,0,0,0,0,0,0,1.32171328579026,0,0,0.590129310341499,0.393010762749165,0.411202997999018,0.501559486172034,0,0,0,0.557052284425868,0,0.443067789167242,0.541607727530031,0.384273959177026,1.04047478047903,0.328875809207352,0.552700035571697,0.579606171470105,0.296573126324121,0,0,0.339928028092699,0.766440987203842,0.68725489096526,0,0.637130828648193,0,0.950452044448374,0,0.639933055772092,0,0.473554504088034,0.821127996921047,0.403213486449465,0.267440195783507,0.434473211648397,4.87613732627923,2.01210257911091,0.383587685530591,0.361439152384566,1.00267582127178,1.01392563272577,0.795285947051099,0,0.378139268656271,0.443458794925128,0.263504357079378,10.8712632663101,0.364295288292542,0.370784442784429,2.27183175558278,2.78607579678828,3.32394901297163,0,0,0,0.198762407366705,0.860234595106124,2.42998351125316,1.69592382577203,3.77549492588915,0.825354125820202,1.46296476575767,1.55050055501597,1.77883131343355,0.66944122552934,4.83395180530976,0.760272105718513,2.92874469057803,2.94130464276695,2.43042584364528,0.535798369704479,0.22452937262617,0.788280363383256,1.53316637465883,0.949265659568129,0.366403487860815,1.31780417436063,0,0,2.98183171017191,1.13967460498122,1.19168262731897,0,1.06400514659507,1.68203280042692,3.20246987189115,0.74000264525148,1.55605517699883,0.538842688278752,0.980771418680752,1.21085942115945,1.15235184896,0.937285727335186,1.5608003841516,2.85235910772225,3.43731965269142,1.76151747965647,1.78060238804945,1.68540968042698,1.02077085627447,0.859840221182376,1.13658359293342,0,0.741800787835671,0.910161361938026,0,1.0100166837244,1.00094815897571,2.49357703935765,2.63386572528503,1.83892677479412,0.600952235626387,0.567160915800105,0.717558542755448,1.06778694409284,3.39091041855299,0.300091096084402,2.26715564324566,1.54584324027377,1.67505170698431,0.168776332241266,1.26668106709558,1.51460264546469,1.28869858099219,1.2931684545505,1.77504796258307,1.81353776809752,1.01736355386293,0.386521706326594,0.272746120590835,2.00763216772303,0.365921118388786,0.397589304964456,1.2781333715647,1.45125477021519,2.01856680700503,0.36497735907583,3.12899064659632,3.85944562915731,0,4.17931135228781,5.0531563716871,0.709840800239063,0.505754070234305,0.482022059766964,1.10293972732394,1.08939722046203,0.237270619111097,0.539325232640658,1.37355025587742,0,0.738155454624648,2.80483547606892,3.7041661019826,0,63.3775174109154,112.042302701249,66.1684695483173,0.882926198829301,13.8976935553718,0.857839051492628,0.329250856225877,1.1240175325762,0.301586917234893,0.185176890317059,0,1.03993478527958,1.44331342025273,0.927443239800615,1.6437217193015,2.45422961193825,3.24089858803628,1.90254152234598,0,1.71697232418975,0.246217006087397,0.234004265139238,0.743155811443641,0.93733833986777,0.671928512795438,0.567100388969546,0.53735113621709,0,0,6.40462209264727,1.40877494421162,0.207328115540772,0.144119953416961,0.50496973370552,0.190493682876507,0,0,0,0,0,0,0.112131084345361,1.30788020649984,0.95339771567235,0.646358578788889,0,3.381211010224,1.59562869950922,1.04007436911366,0.771622122786426,1.41849132023278,0.799266537048298,0,0,1.64648067356154,0,0,2.37585561880029,6.02878754119172,0.871533458600294,4.89867656792079,0,0,0,1.4377491329495,1.14861935834114,1.42636905040718,3.61953266668948,1.02738161275192,1.61154866915906,0.224170287987055,0,0.431255149719035,0.641715181398742,0.254094624222463,1.30139853857622,0.773288812777695,0.167516265334349,2.55175500661265,0,0,0.414415513436035,0.49076596687656,2.00068208423871,0.542530047399471,1.87173775377726,2.49800584316026,2.99634588564476,0.819989904948992,6.92176029373754,0,1.03473071292505,1.99267679560631,0.737476674166813,2.95404289191482,0,0.343143423810856,0,0.862856803274467,0.213455115606889,0.303127571446259,0,1.5119514666484,1.73675465473144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| |||
|short_description=p4@LYRM1 | |||
}} |
Latest revision as of 03:05, 25 September 2015
Short description: | p4@LYRM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LYRM1_5end |
Coexpression cluster: | C703_liver_hepatocellular_Hepatocyte_hepatoblastoma_colon_gastrointestinal_mature |
Association with transcript: | -314bp_to_ENST00000439021, NM_020424, uc010bwi.1, uc010bwj.2, uc010bwk.2_5end |
EntrezGene: | LYRM1 |
HGNC: | 25074 |
UniProt: | O43325 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.79e-15 | 121 |
fat cell | 2.57e-10 | 15 |
muscle precursor cell | 3.41e-10 | 58 |
myoblast | 3.41e-10 | 58 |
multi-potent skeletal muscle stem cell | 3.41e-10 | 58 |
epithelial cell of nephron | 4.72e-10 | 15 |
kidney cell | 8.01e-10 | 17 |
kidney epithelial cell | 8.01e-10 | 17 |
muscle cell | 2.27e-09 | 55 |
embryonic cell | 6.96e-09 | 250 |
kidney tubule cell | 7.22e-09 | 10 |
nephron tubule epithelial cell | 7.22e-09 | 10 |
vascular associated smooth muscle cell | 1.42e-08 | 32 |
kidney cortical cell | 5.09e-08 | 12 |
renal cortical epithelial cell | 5.09e-08 | 12 |
electrically responsive cell | 6.29e-08 | 61 |
electrically active cell | 6.29e-08 | 61 |
multi fate stem cell | 6.73e-08 | 427 |
stem cell | 1.48e-07 | 441 |
somatic stem cell | 2.03e-07 | 433 |
smooth muscle cell | 2.48e-07 | 43 |
smooth muscle myoblast | 2.48e-07 | 43 |