FFCP PHASE1:Hg19::chr15:45689468..45689486,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2628 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4175 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-11bp_to_ENST00000560538_5end | |||
|cluster_id=chr15:45689468..45689486,- | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_4_at_GATM_5end | |||
|id=chr15:45689468..45689486,- | |||
|ontology_enrichment_celltype=CL:0002563!2.15e-10!4;CL:0000181!1.11e-07!12;CL:0000417!1.11e-07!12;CL:0000668!1.11e-07!12;CL:0000414!1.11e-07!12;CL:0000412!1.11e-07!12;CL:0000182!1.11e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002563;9.11e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,9.11e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!9.36e-27!27;UBERON:0005409!2.36e-25!35;UBERON:0000059!3.29e-14!11;UBERON:0004921!3.76e-14!129;UBERON:0004185!3.76e-14!129;UBERON:0001007!2.19e-11!155;UBERON:0001555!2.19e-11!155;UBERON:0007026!2.19e-11!155;UBERON:0002108!1.08e-10!14;UBERON:0001242!2.15e-10!4;UBERON:0001262!2.15e-10!4;UBERON:0004786!2.15e-10!4;UBERON:0004808!2.15e-10!4;UBERON:0001277!2.15e-10!4;UBERON:0001052!2.25e-10!4;UBERON:0004119!3.03e-10!169;UBERON:0000925!3.03e-10!169;UBERON:0006595!3.03e-10!169;UBERON:0001155!3.58e-10!9;UBERON:0003350!1.72e-08!5;UBERON:0004907!1.79e-08!5;UBERON:0002107!3.73e-08!19;UBERON:0006925!3.73e-08!19;UBERON:0008836!3.73e-08!19;UBERON:0003929!8.01e-08!54;UBERON:0008835!4.61e-07!22;UBERON:0003894!4.61e-07!22;UBERON:0009854!9.23e-07!23 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;1.56e-59;17!UBERON:0005409;1.22e-46;22!UBERON:0002108;1.49e-40;4!UBERON:0004921;2.16e-29;33!UBERON:0000059;1.21e-18;11!UBERON:0001555;3.07e-12;54!UBERON:0001007;3.33e-11;81!UBERON:0001155;8.16e-11;9!UBERON:0002114;1.04e-08;2!UBERON:0000922;2.37e-08;49!UBERON:0001242;9.11e-07;4!UBERON:0001262;9.11e-07;4!UBERON:0004786;9.11e-07;4!UBERON:0004808;9.11e-07;4!UBERON:0001277;9.11e-07;4!UBERON:0001052;9.63e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.63e-59,17;UBERON:0005409,2.90e-41,25;UBERON:0002108,1.49e-40,4;UBERON:0000059,1.24e-18,11;UBERON:0004921,1.18e-11,118;UBERON:0001155,8.37e-11,9;UBERON:0001007,1.89e-09,145;UBERON:0001555,1.89e-09,145;UBERON:0007026,1.89e-09,145;UBERON:0002114,1.04e-08,2;UBERON:0004119,1.53e-08,160;UBERON:0000925,1.53e-08,160;UBERON:0006595,1.53e-08,160;UBERON:0011216,1.33e-07,223;UBERON:0001242,9.11e-07,4;UBERON:0001262,9.11e-07,4;UBERON:0004786,9.11e-07,4;UBERON:0004808,9.11e-07,4;UBERON:0001277,9.11e-07,4;UBERON:0001052,9.63e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.11723694384549,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,10.2610774823873,12.2206028986725,0,0,0,0,0,0,0,0,0,0,10.8891644443797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630265458457789,0.494495150286999,1.14586024552114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.65263488203798,0.647782773655864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36.8120734174896,21.4188369293878,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0,0,11.1095636508234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@GATM | |||
}} |
Latest revision as of 20:03, 17 September 2015
Short description: | p4@GATM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GATM_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | -11bp_to_ENST00000560538_5end |
EntrezGene: | GATM |
HGNC: | 4175 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.63e-59 | 17 |
gastrointestinal system | 2.90e-41 | 25 |
small intestine | 1.49e-40 | 4 |
large intestine | 1.24e-18 | 11 |
subdivision of digestive tract | 1.18e-11 | 118 |
colon | 8.37e-11 | 9 |
digestive system | 1.89e-09 | 145 |
digestive tract | 1.89e-09 | 145 |
primitive gut | 1.89e-09 | 145 |
duodenum | 1.04e-08 | 2 |
endoderm-derived structure | 1.53e-08 | 160 |
endoderm | 1.53e-08 | 160 |
presumptive endoderm | 1.53e-08 | 160 |
organ system subdivision | 1.33e-07 | 223 |
intestinal mucosa | 9.11e-07 | 4 |
wall of intestine | 9.11e-07 | 4 |
gastrointestinal system mucosa | 9.11e-07 | 4 |
gastrointestinal system epithelium | 9.11e-07 | 4 |
intestinal epithelium | 9.11e-07 | 4 |
rectum | 9.63e-07 | 4 |