FFCP PHASE1:Hg19::chr12:49658855..49658874,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84790 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20768 | |||
|TSSclassifier=strong | |||
|UniProt=E9PGK3,F8VS66,Q9BQE3 | |||
|association_with_transcript=0bp_to_ENST00000321665,ENST00000549183,NM_032704,uc001rtt.1_5end | |||
|cluster_id=chr12:49658855..49658874,+ | |||
|description=CAGE_peak_1_at_TUBA1C_5end | |||
|id=chr12:49658855..49658874,+ | |||
|ontology_enrichment_celltype=CL:0000548!1.32e-53!679;CL:0000004!1.32e-53!679;CL:0000255!1.32e-53!679;CL:0000012!1.19e-52!682;CL:0000066!9.42e-35!254;CL:0000003!4.12e-34!722;CL:0000144!9.38e-33!625;CL:0002321!2.22e-28!248;CL:0000220!3.51e-28!246;CL:0000063!1.58e-25!578;CL:0002371!2.67e-24!591;CL:0000222!2.28e-19!119;CL:0000055!6.71e-19!180;CL:0000076!1.26e-12!62;CL:0000183!1.95e-10!59;CL:0000192!4.98e-10!42;CL:0000514!4.98e-10!42;CL:0000680!1.02e-09!57;CL:0000056!1.02e-09!57;CL:0000355!1.02e-09!57;CL:0000187!1.40e-09!54;CL:0000393!2.97e-09!60;CL:0000211!2.97e-09!60;CL:0000213!3.15e-09!57;CL:0000215!3.15e-09!57;CL:1000497!8.38e-09!18;CL:0002518!8.38e-09!18;CL:0000057!8.50e-09!75;CL:0000359!1.30e-08!32;CL:1000449!2.34e-08!16;CL:0000077!5.35e-07!19;CL:0002681!8.79e-07!13;CL:0002584!8.79e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:1000497;1.68e-09;17!CL:0002518;1.68e-09;17!CL:1000449;4.34e-09;15!CL:0000359;3.08e-08;32!CL:0002681;1.69e-07;12!CL:0002584;1.69e-07;12!CL:0000192;3.13e-07;43!CL:0000077;5.34e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.24e-35,253;CL:0002321,1.44e-28,250;CL:0000222,1.83e-19,121;CL:0000076,2.79e-12,63;CL:0000192,1.17e-09,43;CL:0000514,1.17e-09,43;CL:0000213,1.41e-09,58;CL:0000215,1.41e-09,58;CL:1000497,1.69e-09,17;CL:0002518,1.69e-09,17;CL:0000680,1.99e-09,58;CL:0000056,1.99e-09,58;CL:0000355,1.99e-09,58;CL:0000187,2.77e-09,55;CL:1000449,4.34e-09,15;CL:0000393,5.48e-09,61;CL:0000211,5.48e-09,61;CL:0000057,9.98e-09,76;CL:0000359,1.30e-08,32;CL:0002681,1.69e-07,12;CL:0002584,1.69e-07,12;CL:0000077,5.35e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000514;3.13e-07;43 | |||
|ontology_enrichment_disease=DOID:14566!2.81e-12!239;DOID:162!1.08e-11!235;DOID:305!5.71e-10!106;DOID:0050687!3.17e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,2.81e-12,239;DOID:162,1.08e-11,235;DOID:305,5.71e-10,106;DOID:0050687,3.17e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0005256!9.41e-14!143;UBERON:0003914!3.13e-13!118;UBERON:0003104!1.93e-12!238;UBERON:0009142!1.93e-12!238;UBERON:0002100!3.80e-12!216;UBERON:0000490!1.32e-11!138;UBERON:0001637!8.32e-11!42;UBERON:0003509!8.32e-11!42;UBERON:0004572!8.32e-11!42;UBERON:0002049!1.52e-10!79;UBERON:0007798!1.52e-10!79;UBERON:0000486!1.57e-10!82;UBERON:0001981!6.48e-10!60;UBERON:0007500!6.48e-10!60;UBERON:0004537!6.48e-10!60;UBERON:0006965!6.48e-10!60;UBERON:0000914!6.60e-10!83;UBERON:0002329!6.60e-10!83;UBERON:0003077!6.60e-10!83;UBERON:0003059!6.60e-10!83;UBERON:0007282!6.60e-10!83;UBERON:0009618!6.60e-10!83;UBERON:0007285!6.60e-10!83;UBERON:0004290!9.92e-10!70;UBERON:0000055!1.48e-09!69;UBERON:0004872!6.01e-09!84;UBERON:0004211!2.34e-08!16;UBERON:0001285!2.34e-08!16;UBERON:0007684!2.34e-08!16;UBERON:0003220!2.34e-08!16;UBERON:0004208!2.34e-08!16;UBERON:0001134!1.38e-07!61;UBERON:0002036!1.38e-07!61;UBERON:0003082!1.38e-07!61;UBERON:0006555!2.07e-07!17;UBERON:0005103!2.07e-07!17;UBERON:0000083!2.07e-07!17;UBERON:0009201!2.07e-07!17;UBERON:0004819!2.07e-07!17;UBERON:0006553!2.07e-07!17;UBERON:0003074!2.07e-07!17;UBERON:0003060!2.07e-07!17;UBERON:0000926!2.44e-07!448;UBERON:0004120!2.44e-07!448;UBERON:0006603!2.44e-07!448;UBERON:0004573!3.05e-07!33;UBERON:0004571!3.05e-07!33;UBERON:0002199!5.10e-07!45;UBERON:0002416!5.10e-07!45;UBERON:0002385!5.81e-07!63;UBERON:0001015!5.81e-07!63;UBERON:0000383!5.81e-07!63;UBERON:0001225!8.79e-07!13;UBERON:0008987!8.79e-07!13;UBERON:0003102!9.07e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;4.34e-09;15!UBERON:0004819;4.34e-09;15!UBERON:0001285;4.34e-09;15!UBERON:0007684;4.34e-09;15!UBERON:0003914;7.99e-09;74!UBERON:0001637;5.83e-08;42!UBERON:0003509;5.83e-08;42!UBERON:0004572;5.83e-08;42!UBERON:0001225;1.69e-07;12!UBERON:0008987;1.69e-07;12!UBERON:0007500;2.08e-07;56!UBERON:0001981;2.08e-07;56!UBERON:0004537;2.08e-07;56!UBERON:0000353;2.22e-07;15!UBERON:0001851;8.22e-07;15 | |||
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| |||
|short_description=p1@TUBA1C | |||
}} |
Latest revision as of 16:03, 18 September 2015
Short description: | p1@TUBA1C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TUBA1C_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000321665, ENST00000549183, NM_032704, uc001rtt.1_5end |
EntrezGene: | TUBA1C |
HGNC: | 20768 |
UniProt: | E9PGK3F8VS66Q9BQE3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.24e-35 | 253 |
embryonic cell | 1.44e-28 | 250 |
mesodermal cell | 1.83e-19 | 121 |
squamous epithelial cell | 2.79e-12 | 63 |
smooth muscle cell | 1.17e-09 | 43 |
smooth muscle myoblast | 1.17e-09 | 43 |
lining cell | 1.41e-09 | 58 |
barrier cell | 1.41e-09 | 58 |
kidney cell | 1.69e-09 | 17 |
kidney epithelial cell | 1.69e-09 | 17 |
muscle precursor cell | 1.99e-09 | 58 |
myoblast | 1.99e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.99e-09 | 58 |
muscle cell | 2.77e-09 | 55 |
epithelial cell of nephron | 4.34e-09 | 15 |
electrically responsive cell | 5.48e-09 | 61 |
electrically active cell | 5.48e-09 | 61 |
fibroblast | 9.98e-09 | 76 |
vascular associated smooth muscle cell | 1.30e-08 | 32 |
kidney cortical cell | 1.69e-07 | 12 |
renal cortical epithelial cell | 1.69e-07 | 12 |
mesothelial cell | 5.35e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 2.81e-12 | 239 |
cancer | 1.08e-11 | 235 |
carcinoma | 5.71e-10 | 106 |
cell type cancer | 3.17e-08 | 143 |