FFCP PHASE1:Hg19::chr7:767249..767307,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:767249..767307,-
|short_description=p3@PRKAR1B
|description=CAGE_peak_3_at_PRKAR1B_5end
|association_with_transcript=0bp_to_ENST00000403562,uc003siw.1_5end...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5575 | |EntrezGene=5575 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9390 | |HGNC=9390 | ||
|TSSclassifier=strong | |||
|UniProt=P31321 | |UniProt=P31321 | ||
|association_with_transcript=0bp_to_ENST00000403562,uc003siw.1_5end | |||
|cluster_id=chr7:767249..767307,- | |||
|description=CAGE_peak_3_at_PRKAR1B_5end | |||
|id=chr7:767249..767307,- | |||
|ontology_enrichment_celltype=CL:0000066!3.49e-34!254;CL:0000223!1.68e-10!59;CL:0002076!1.17e-08!43;CL:0000076!1.62e-08!62 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.80e-09;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.06e-39,253;CL:0000223,6.31e-13,58;CL:0002076,6.61e-11,42;CL:0000076,5.49e-08,63 | |||
|ontology_enrichment_development_v019=CL:0000223;4.77e-07;58 | |||
|ontology_enrichment_disease=DOID:162!1.04e-39!235;DOID:14566!1.16e-39!239;DOID:305!2.77e-30!106;DOID:0050687!1.36e-29!143;DOID:0050686!3.52e-14!137;DOID:2531!1.53e-07!51;DOID:0060083!1.53e-07!51 | |||
|ontology_enrichment_disease_v019=DOID:305;1.31e-11;106!DOID:1749;1.29e-07;14!DOID:0050687;1.93e-07;143 | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.30e-41,235;DOID:14566,1.43e-39,239;DOID:305,3.61e-35,106;DOID:0050687,7.84e-33,143;DOID:0050686,8.16e-14,137;DOID:2531,6.02e-08,51;DOID:0060083,6.02e-08,51;DOID:1749,1.71e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.51e-12!169;UBERON:0000925!1.51e-12!169;UBERON:0006595!1.51e-12!169;UBERON:0004921!9.38e-12!129;UBERON:0004185!9.38e-12!129;UBERON:0001007!4.11e-11!155;UBERON:0001555!4.11e-11!155;UBERON:0007026!4.11e-11!155;UBERON:0001041!8.42e-11!98;UBERON:0005177!1.22e-10!107;UBERON:0000077!1.49e-10!130;UBERON:0000072!4.28e-08!46;UBERON:0000065!6.15e-08!53;UBERON:0001004!2.42e-07!72;UBERON:0000466!2.93e-07!126;UBERON:0003104!3.69e-07!238;UBERON:0009142!3.69e-07!238;UBERON:0008947!5.87e-07!38;UBERON:0003258!5.87e-07!38;UBERON:0005172!8.82e-07!55;UBERON:0005173!8.82e-07!55 | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;4.65e-09;24!UBERON:0011143;4.65e-09;24!UBERON:0006554;2.12e-08;30!UBERON:0001008;2.12e-08;30!UBERON:0000072;9.25e-08;37!UBERON:0004807;1.37e-07;22!UBERON:0000489;4.04e-07;29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,1.24e-13,101;UBERON:0004921,2.98e-09,118;UBERON:0001041,3.29e-09,87;UBERON:0004119,7.57e-09,160;UBERON:0000925,7.57e-09,160;UBERON:0006595,7.57e-09,160;UBERON:0000072,4.12e-08,47;UBERON:0000065,4.72e-08,54;UBERON:0002113,5.13e-08,26;UBERON:0003918,5.13e-08,26;UBERON:0011143,5.13e-08,26;UBERON:0005095,5.13e-08,26;UBERON:0007687,5.13e-08,26;UBERON:0001007,7.40e-08,145;UBERON:0001555,7.40e-08,145;UBERON:0007026,7.40e-08,145;UBERON:0008947,1.04e-07,38;UBERON:0003258,1.04e-07,38;UBERON:0005172,1.23e-07,54;UBERON:0005173,1.23e-07,54;UBERON:0004807,5.81e-07,28;UBERON:0001004,6.84e-07,74;UBERON:0009569,8.36e-07,112 | |||
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| ||
|short_description=p3@PRKAR1B | |||
}} | }} |
Latest revision as of 14:11, 19 September 2015
Short description: | p3@PRKAR1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PRKAR1B_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000403562, uc003siw.1_5end |
EntrezGene: | PRKAR1B |
HGNC: | 9390 |
UniProt: | P31321 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.06e-39 | 253 |
endodermal cell | 6.31e-13 | 58 |
endo-epithelial cell | 6.61e-11 | 42 |
squamous epithelial cell | 5.49e-08 | 63 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 1.24e-13 | 101 |
subdivision of digestive tract | 2.98e-09 | 118 |
foregut | 3.29e-09 | 87 |
endoderm-derived structure | 7.57e-09 | 160 |
endoderm | 7.57e-09 | 160 |
presumptive endoderm | 7.57e-09 | 160 |
segment of respiratory tract | 4.12e-08 | 47 |
respiratory tract | 4.72e-08 | 54 |
kidney | 5.13e-08 | 26 |
kidney mesenchyme | 5.13e-08 | 26 |
upper urinary tract | 5.13e-08 | 26 |
kidney rudiment | 5.13e-08 | 26 |
kidney field | 5.13e-08 | 26 |
digestive system | 7.40e-08 | 145 |
digestive tract | 7.40e-08 | 145 |
primitive gut | 7.40e-08 | 145 |
respiratory primordium | 1.04e-07 | 38 |
endoderm of foregut | 1.04e-07 | 38 |
abdomen element | 1.23e-07 | 54 |
abdominal segment element | 1.23e-07 | 54 |
respiratory system epithelium | 5.81e-07 | 28 |
respiratory system | 6.84e-07 | 74 |
subdivision of trunk | 8.36e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.30e-41 | 235 |
disease of cellular proliferation | 1.43e-39 | 239 |
carcinoma | 3.61e-35 | 106 |
cell type cancer | 7.84e-33 | 143 |
organ system cancer | 8.16e-14 | 137 |
hematologic cancer | 6.02e-08 | 51 |
immune system cancer | 6.02e-08 | 51 |
squamous cell carcinoma | 1.71e-07 | 14 |