FFCP PHASE1:Hg19::chr6:1626436..1626467,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:1626436..1626467,-
|short_description=p4@GMDS
|description=CAGE_peak_4_at_GMDS_5end
|association_with_transcript=-13bp_to_ENST00000486793_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2762 | |EntrezGene=2762 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4369 | |HGNC=4369 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-13bp_to_ENST00000486793_5end | |||
|cluster_id=chr6:1626436..1626467,- | |||
|coexpression_cluster_id=C4581 | |||
|description=CAGE_peak_4_at_GMDS_5end | |||
|id=chr6:1626436..1626467,- | |||
|ontology_enrichment_celltype=CL:0000327!5.14e-14!14;CL:0000153!4.56e-13!9;CL:0000447!4.56e-13!9;CL:0000499!6.88e-10!27;CL:0000667!1.53e-08!6;CL:0000058!1.53e-08!6;CL:0000138!1.53e-08!6;CL:1000507!1.18e-07!12;CL:1000494!1.18e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000153;2.14e-24;9!CL:0000447;2.14e-24;9!CL:0000138;7.56e-20;6!CL:0000327;1.84e-18;15!CL:0000499;2.15e-14;28!CL:0002564;2.43e-13;3!CL:0000669;5.69e-10;4!CL:0002549;2.56e-09;2!CL:0002575;2.56e-09;2!CL:0002602;2.56e-09;2!CL:0002540;2.78e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,1.52e-24,9;CL:0000447,1.52e-24,9;CL:0000058,7.72e-20,6;CL:0000138,7.72e-20,6;CL:0000327,1.46e-18,15;CL:0000499,1.86e-14,28;CL:0002564,2.18e-13,3;CL:0000669,7.34e-10,4;CL:0002602,2.07e-09,2;CL:0002549,2.25e-09,2;CL:0002575,2.57e-09,2;CL:0002540,2.84e-07,6;CL:0000151,5.86e-07,36;CL:0000214,9.33e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.19e-29!115;UBERON:0001049!1.16e-17!57;UBERON:0005068!1.16e-17!57;UBERON:0006241!1.16e-17!57;UBERON:0007135!1.16e-17!57;UBERON:0003075!4.94e-16!86;UBERON:0007284!4.94e-16!86;UBERON:0002616!1.80e-15!59;UBERON:0002346!7.52e-15!90;UBERON:0005743!8.60e-15!86;UBERON:0001017!9.60e-15!82;UBERON:0000153!4.04e-13!129;UBERON:0007811!4.04e-13!129;UBERON:0000955!7.84e-13!69;UBERON:0006238!7.84e-13!69;UBERON:0000073!1.85e-12!94;UBERON:0001016!1.85e-12!94;UBERON:0000033!5.22e-11!123;UBERON:0000477!6.17e-11!286;UBERON:0003076!7.59e-11!15;UBERON:0003057!7.59e-11!15;UBERON:0002780!7.55e-10!41;UBERON:0001890!7.55e-10!41;UBERON:0006240!7.55e-10!41;UBERON:0003080!1.69e-09!42;UBERON:0004905!2.86e-09!5;UBERON:0000982!2.86e-09!5;UBERON:0004770!2.86e-09!5;UBERON:0004121!3.85e-09!169;UBERON:0005174!6.42e-09!5;UBERON:0001137!6.42e-09!5;UBERON:0002298!6.58e-09!8;UBERON:0000924!1.16e-08!173;UBERON:0006601!1.16e-08!173;UBERON:0003056!2.32e-08!61;UBERON:0000119!8.46e-08!312;UBERON:0002020!1.09e-07!34;UBERON:0003528!1.09e-07!34;UBERON:0009773!1.18e-07!12;UBERON:0001231!1.18e-07!12;UBERON:0004810!1.18e-07!12;UBERON:0004111!1.47e-07!241;UBERON:0004733!3.38e-07!12;UBERON:0002028!3.38e-07!12;UBERON:0007277!3.38e-07!12;UBERON:0002308!3.92e-07!9;UBERON:0000125!3.92e-07!9;UBERON:0000475!4.07e-07!365;UBERON:0003296!5.49e-07!4;UBERON:0010133!5.49e-07!4;UBERON:0000025!8.43e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0004905;5.10e-25;8!UBERON:0000982;5.10e-25;8!UBERON:0004770;5.10e-25;8!UBERON:0011135;6.40e-21;5!UBERON:0002216;6.40e-21;5!UBERON:0011134;6.40e-21;5!UBERON:0002209;6.40e-21;5!UBERON:0002213;6.40e-21;5!UBERON:0007844;6.40e-21;5!UBERON:0011138;6.40e-21;5!UBERON:0001130;6.40e-21;5!UBERON:0001066;6.40e-21;5!UBERON:0001468;6.40e-21;5!UBERON:0002242;2.43e-13;3!UBERON:0001829;1.53e-10;2!UBERON:0002360;3.74e-10;2!UBERON:0000094;3.74e-10;2!UBERON:0010743;3.74e-10;2!UBERON:0004765;2.19e-09;26!UBERON:0005629;2.56e-09;2!UBERON:0005358;2.56e-09;2!UBERON:0006444;2.56e-09;2!UBERON:0001995;2.56e-09;2!UBERON:0001886;2.56e-09;2!UBERON:0004715;2.56e-09;2!UBERON:0004086;2.56e-09;2!UBERON:0005282;2.56e-09;2!UBERON:0005281;2.56e-09;2!UBERON:0001044;1.03e-07;6!UBERON:0003293;1.03e-07;6!UBERON:0003294;1.03e-07;6!UBERON:0010047;1.03e-07;6!UBERON:0003408;1.03e-07;6!UBERON:0000167;1.03e-07;6!UBERON:0001434;1.72e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,2.60e-25,8;UBERON:0000982,2.60e-25,8;UBERON:0004770,2.60e-25,8;UBERON:0011135,4.65e-21,5;UBERON:0002216,4.65e-21,5;UBERON:0011134,4.65e-21,5;UBERON:0002209,4.65e-21,5;UBERON:0002213,4.65e-21,5;UBERON:0005856,4.65e-21,5;UBERON:0005866,4.65e-21,5;UBERON:0005863,4.65e-21,5;UBERON:0007844,4.65e-21,5;UBERON:0011138,4.65e-21,5;UBERON:0001130,4.65e-21,5;UBERON:0001066,4.65e-21,5;UBERON:0001468,4.65e-21,5;UBERON:0002242,2.18e-13,3;UBERON:0003068,2.18e-13,3;UBERON:0002328,2.18e-13,3;UBERON:0004880,2.18e-13,3;UBERON:0001829,1.53e-10,2;UBERON:0002360,3.66e-10,2;UBERON:0000094,3.66e-10,2;UBERON:0010743,3.66e-10,2;UBERON:0006444,2.07e-09,2;UBERON:0001995,2.07e-09,2;UBERON:0004715,2.07e-09,2;UBERON:0005629,2.25e-09,2;UBERON:0005358,2.25e-09,2;UBERON:0001886,2.25e-09,2;UBERON:0004086,2.25e-09,2;UBERON:0005282,2.25e-09,2;UBERON:0005281,2.25e-09,2;UBERON:0001044,1.03e-07,6;UBERON:0003293,1.03e-07,6;UBERON:0003294,1.03e-07,6;UBERON:0010047,1.03e-07,6;UBERON:0000167,1.03e-07,6;UBERON:0006915,9.33e-07,3;UBERON:0007616,9.33e-07,3;UBERON:0002217,9.33e-07,3;UBERON:0002018,9.33e-07,3 | |||
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| ||
|short_description=p4@GMDS | |||
}} | }} |
Latest revision as of 17:37, 16 September 2015
Short description: | p4@GMDS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GMDS_5end |
Coexpression cluster: | C4581_Chondrocyte_salivary_submaxillary_parotid_dura_aorta_retina |
Association with transcript: | -13bp_to_ENST00000486793_5end |
EntrezGene: | GMDS |
HGNC: | 4369 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 1.52e-24 | 9 |
carbohydrate secreting cell | 1.52e-24 | 9 |
chondroblast | 7.72e-20 | 6 |
chondrocyte | 7.72e-20 | 6 |
extracellular matrix secreting cell | 1.46e-18 | 15 |
stromal cell | 1.86e-14 | 28 |
nucleus pulposus cell of intervertebral disc | 2.18e-13 | 3 |
pericyte cell | 7.34e-10 | 4 |
annulus pulposus cell | 2.07e-09 | 2 |
fibroblast of choroid plexus | 2.25e-09 | 2 |
central nervous system pericyte | 2.57e-09 | 2 |
mesenchymal stem cell of the bone marrow | 2.84e-07 | 6 |
secretory cell | 5.86e-07 | 36 |
synovial cell | 9.33e-07 | 3 |