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MCL coexpression mm9:320: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.180840494114715,0.107744855247029,0,0,0.0333321253665857,0.374676111415838,0.0831986651315277,0.301635673158024,0.39632267077331,0,0.916750210201866,0.917351351299484,0.914587693946234,0.0354470656487682,1.15849150701185,1.02793610849472,0.21483582178082,0.164001280677683,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177787383341725,0,0,0,0,0,0,0,0,0,0,0,0,0,0.86780554202717,0.236880264493592,0.604749072842569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0706205532059261,0,0,0,0,0,0,0,0,0,0,0.0893284091371433,1.00271996008777,0.0263034168843749,0,0,0,0,0,0,0,0.110319863569628,0.368428331907466,0.0651189800845078,0.22076806852419,0.294411220774837,0,0,0,0.098801861608942,0.427715163864743,0.447112768205563,0.342956243976298,0,0,0,0,0,0,0,0,0.299998574286809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365800697430258,0.180325425270187,0.195436618912525,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0861996515928926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0519191528207588,0,0,0,0.0438537854956353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.093833775061694,0.0398278057593247,0.109813392994768,0.121976689400977,0,0,0.137398724818722,0.117946305307076,0,0,0,0.240302768815063,0,0,0,0,0.0136440316323445,0,0,0.0635717028550276,0.086880916817156,0.0642538110976656,0.218916923110154,0.181287491017976,0.110353348438991,0,0,0.173700201812769,0.10582914506561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0663147875126409,0,0,0,0,0,0,0,0,0,0.119268019631849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572166647999559,0.0814866010703366,0.191893350882575,0.288213953931668,0.443579783280573,0.485579982245155,0.267146409463255,0.354024468246181,0.350984098053906,0,0,0,0,0,0,0,0.034489466458534,0,0.0529304404135566,0.100000590433997,0,0,0,0,0,0,0,0,0,0,0,0.289596390303526,0.147815532899656,0.208512768087948,0.250304078488806,0.277639803678183,0.267899708397587,0.292602393023045,0.308313942349241,0.280737229706628,0.282051214834253,0.15896555548549,0.316397440896801,0.270889894994264,0.359008953458966,0,0,0,0,0,0.0747003483965965,0.0730404042754446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0386142987472755,0,0.0242538736058389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0845301845292944,0,0.0865703124974023,0.16546265671817
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000988!5.46e-12!32;CL:0002032!5.46e-12!32;CL:0000037!5.46e-12!32;CL:0000566!5.46e-12!32;CL:0000837!5.46e-12!32;CL:0000838!3.77e-08!12;CL:0002031!1.05e-07!25;CL:0000542!2.57e-07!13;CL:0000051!2.57e-07!13;CL:0000084!4.39e-07!11;CL:0000827!4.39e-07!11
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!1.16e-21!48;UBERON:0002405!1.16e-21!48;UBERON:0002390!5.60e-19!45;UBERON:0003061!5.60e-19!45;UBERON:0004177!4.16e-17!29;UBERON:0005057!4.16e-17!29;UBERON:0000077!7.89e-13!35;UBERON:0003408!2.54e-12!24;UBERON:0002370!1.04e-11!23;UBERON:0000974!1.04e-11!23;UBERON:0004807!1.04e-11!23;UBERON:0005058!1.04e-11!23;UBERON:0003351!1.04e-11!23;UBERON:0009113!1.04e-11!23;UBERON:0003295!1.04e-11!23;UBERON:0009722!1.04e-11!23;UBERON:0005562!1.04e-11!23;UBERON:0007690!1.04e-11!23;UBERON:0001004!2.63e-11!42;UBERON:0006562!5.43e-11!24;UBERON:0001557!5.43e-11!24;UBERON:0001042!5.43e-11!24;UBERON:0008814!5.43e-11!24;UBERON:0009145!5.43e-11!24;UBERON:0001041!5.59e-11!80;UBERON:0000065!9.38e-11!41;UBERON:0003081!9.34e-10!87;UBERON:0000072!3.60e-09!27;UBERON:0002106!4.32e-07!6;UBERON:0004457!4.32e-07!6;UBERON:0000042!4.32e-07!6;UBERON:0004854!4.32e-07!6;UBERON:0009034!4.32e-07!6;UBERON:0002095!4.32e-07!6;UBERON:0004782!4.32e-07!6;UBERON:0003281!4.32e-07!6;UBERON:0009664!4.32e-07!6;UBERON:0002296!4.32e-07!6;UBERON:0005602!4.32e-07!6;UBERON:0001179!4.32e-07!6;UBERON:0006293!4.32e-07!6;UBERON:0005911!7.49e-07!69
|tfbs_overrepresentation_for_novel_motifs=0.317337,0.0329936,0.591347,0.118279,0.343185,1.87555,0.1827,0.339268,0.906796,0.0707499,0.154519,0.174808,0.0649643,0.19087,0.672427,0,0.333505,0.140166,0.148837,0.112549,1.31076,0.734777,0.190264,0.340076,0.0864761,0.209658,0.13702,0.138754,0.0537016,0.777607,0.408389,1.88064,0.322826,0.2343,0.0433193,0.00309599,0.0315753,0.172462,0.263333,0.0187026,0.606367,0.416106,0.0176074,1.49016,0.525057,0.112117,0.271716,0.148281,0.230262,0.0548502,0.319672,0.228569,1.34051,0.538915,0.554419,0.569593,0.212299,0.166575,0.124743,0.194311,0.39965,0.235329,0.653348,0.310832,0.20328,0.342909,0.678037,1.00855,0.395762,0.867464,0.0740354,0.354986,0.00699494,1.42842,0.00783682,0.386101,0.234136,0.72791,1.00174,2.42345,0.18222,0.917924,1.23084,0.0604242,0.48244,5.64294e-05,0.633027,0.0839192,0.275409,1.16606,0.74267,0.486763,0.427209,0.154464,0.104653,0.224705,0.167294,0.429584,0.271907,0.651259,0.128784,0.416179,0.523506,0.320141,0.855238,0.133214,0.367229,0.447363,0.526859,0.0668927,0.0921762,0.525078,0.241499,0.157745,0.749248,0.142314,0.0199636,0.120391,0.334542,0.125121,0.589296,1.45405,1.78604,0.726359,0.800032,0.388466,0.188119,0.421488,0.67664,3.669,0.508573,0.114231,0.649498,0.205008,0.769462,0.96091,0.328991,0.418217,0.723554,1.52843,1.13499,0.682379,0.219341,0.425235,0.31422,0.133739,0.274066,1.4892,0.332285,0.0381381,0.0865549,0.00437047,0.540306,0.235071,0.204372,0.613593,0.229288,0.179236,0.647931,0.328601,0.732404,0.481698,0.388835,0.304588,1.51548,1.72208,0.878448,0.173777,0.116093
}}

Latest revision as of 15:06, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:59362400..59362427,-p@chr10:59362400..59362427
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Mm9::chr11:106611499..106611516,-p7@Pecam1
Mm9::chr12:114664902..114664912,-p@chr12:114664902..114664912
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Mm9::chr12:114664978..114664991,-p@chr12:114664978..114664991
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Mm9::chr12:114664994..114665005,-p@chr12:114664994..114665005
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Mm9::chr12:114665034..114665093,-p@chr12:114665034..114665093
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Mm9::chr12:114665101..114665117,-p@chr12:114665101..114665117
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Mm9::chr12:114665127..114665158,-p@chr12:114665127..114665158
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Mm9::chr12:114665171..114665182,-p@chr12:114665171..114665182
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Mm9::chr12:114665618..114665633,-p@chr12:114665618..114665633
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Mm9::chr12:114720611..114720616,-p@chr12:114720611..114720616
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Mm9::chr14:52760662..52760683,+p@chr14:52760662..52760683
+
Mm9::chr14:70224655..70224666,-p13@Rhobtb2
Mm9::chr18:35899721..35899728,-p@chr18:35899721..35899728
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Mm9::chr18:35899760..35899782,-p@chr18:35899760..35899782
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Mm9::chr1:162237596..162237613,-p@chr1:162237596..162237613
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Mm9::chr1:195033902..195033924,+p4@Lamb3
Mm9::chr1:80661827..80661880,-p1@Dock10
Mm9::chr2:79095711..79095809,+p1@Itga4
Mm9::chr3:58905732..58905748,-p1@Gpr171
Mm9::chr6:99289369..99289380,-p@chr6:99289369..99289380
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Mm9::chr6:99289414..99289449,-p@chr6:99289414..99289449
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Mm9::chr6:99289457..99289478,-p@chr6:99289457..99289478
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Mm9::chr7:150899491..150899518,-p@chr7:150899491..150899518
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Mm9::chr9:40231017..40231077,-p@chr9:40231017..40231077
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemolymphoid system1.16e-2148
immune system1.16e-2148
hematopoietic system5.60e-1945
blood island5.60e-1945
hemopoietic organ4.16e-1729
immune organ4.16e-1729
mixed endoderm/mesoderm-derived structure7.89e-1335
gland of gut2.54e-1224
thymus1.04e-1123
neck1.04e-1123
respiratory system epithelium1.04e-1123
hemolymphoid system gland1.04e-1123
pharyngeal epithelium1.04e-1123
thymic region1.04e-1123
pharyngeal gland1.04e-1123
entire pharyngeal arch endoderm1.04e-1123
thymus primordium1.04e-1123
early pharyngeal endoderm1.04e-1123
respiratory system2.63e-1142
pharynx5.43e-1124
upper respiratory tract5.43e-1124
chordate pharynx5.43e-1124
pharyngeal arch system5.43e-1124
pharyngeal region of foregut5.43e-1124
foregut5.59e-1180
respiratory tract9.38e-1141
lateral plate mesoderm9.34e-1087
segment of respiratory tract3.60e-0927
spleen4.32e-076
cavity lining4.32e-076
serous membrane4.32e-076
gastrointestinal system mesentery4.32e-076
stomach region4.32e-076
mesentery4.32e-076
gastrointestinal system serosa4.32e-076
mesentery of stomach4.32e-076
gut mesentery4.32e-076
dorsal mesentery4.32e-076
dorsal mesogastrium4.32e-076
peritoneal cavity4.32e-076
spleen primordium4.32e-076
endo-epithelium7.49e-0769


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.00189432
MA0004.10.118549
MA0006.10.161227
MA0007.10.110297
MA0009.11.11793
MA0014.18.13201e-05
MA0017.10.744727
MA0019.10.290797
MA0024.10.401898
MA0025.10.645374
MA0027.12.02409
MA0028.10.172544
MA0029.10.383872
MA0030.10.389298
MA0031.10.360121
MA0038.10.209603
MA0040.10.449452
MA0041.10.0795363
MA0042.10.926077
MA0043.10.522621
MA0046.10.469568
MA0048.10.269917
MA0050.10.857182
MA0051.10.617538
MA0052.10.456356
MA0055.12.11921
MA0056.10
MA0057.10.12338
MA0058.10.0704409
MA0059.10.945113
MA0060.10.085477
MA0061.10.111204
MA0063.10
MA0066.10.20204
MA0067.10.748059
MA0068.10.246947
MA0069.10.456647
MA0070.10.448343
MA0071.10.433998
MA0072.10.44111
MA0073.10.00139961
MA0074.11.01086
MA0076.10.0586682
MA0077.10.422739
MA0078.10.239324
MA0081.10.611511
MA0083.10.521922
MA0084.11.0607
MA0087.10.484199
MA0088.10.546599
MA0089.10
MA0090.10.100075
MA0091.18.53371
MA0092.10.329408
MA0093.10.0482497
MA0095.10
MA0098.10
MA0100.10.980367
MA0101.10.274567
MA0103.10.447794
MA0105.10.00683369
MA0106.10.244965
MA0107.10.0529506
MA0108.20.308463
MA0109.10
MA0111.10.107549
MA0113.10.224694
MA0114.12.04391
MA0115.10.525089
MA0116.10.161005
MA0117.10.496768
MA0119.10.0804194
MA0122.10.514153
MA0124.10.698593
MA0125.10.630583
MA0130.10
MA0131.10.78304
MA0132.10
MA0133.10
MA0135.10.554905
MA0136.11.06367
MA0139.10.0129832
MA0140.10.170444
MA0141.10.0633664
MA0142.10.920091
MA0143.11.23876
MA0144.11.17278
MA0145.12.47421
MA0146.10.0267455
MA0147.10.0299713
MA0148.11.30031
MA0149.10.0827548
MA0062.20.112177
MA0035.20.515842
MA0039.20.000757165
MA0138.20.281269
MA0002.25.38921
MA0137.20.223304
MA0104.20.0161848
MA0047.20.601531
MA0112.20.00796502
MA0065.20.835288
MA0150.10.110236
MA0151.10
MA0152.11.13421
MA0153.10.569763
MA0154.10.0611901
MA0155.10.0386081
MA0156.10.805459
MA0157.10.322822
MA0158.10
MA0159.12.25644
MA0160.10.129493
MA0161.10
MA0162.10.000333298
MA0163.10.000236511
MA0164.10.559407
MA0080.22.1697
MA0018.21.09054
MA0099.20.276491
MA0079.22.10146e-05
MA0102.21.11159
MA0258.10.097198
MA0259.10.0270156
MA0442.10
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