FFCP PHASE1:Hg19::chr2:21231906..21231929,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:21231906..21231929,-
|short_description=p13@APOB
|description=CAGE_peak_13_at_APOB_5end
|association_with_transcript=-390bp_to_X03324_5end
|EntrezGene=338...") |
No edit summary |
||
(13 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=338 | |EntrezGene=338 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=603 | |HGNC=603 | ||
|TSSclassifier=strong | |||
|UniProt=Q13789 | |UniProt=Q13789 | ||
|association_with_transcript=-390bp_to_X03324_5end | |||
|cluster_id=chr2:21231906..21231929,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_13_at_APOB_5end | |||
|id=chr2:21231906..21231929,- | |||
|ontology_enrichment_celltype=CL:0000181!1.22e-39!12;CL:0000417!1.22e-39!12;CL:0000668!1.22e-39!12;CL:0000414!1.22e-39!12;CL:0000412!1.22e-39!12;CL:0000182!1.22e-39!12;CL:0000223!3.55e-11!59;CL:0000946!1.78e-08!1;CL:0000786!1.78e-08!1;CL:0000980!1.78e-08!1 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.01e-50;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.05e-50,12;CL:0000223,4.75e-13,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.34e-40;11!UBERON:0009497;2.45e-34;13!UBERON:0001041;9.43e-15;30!UBERON:0003104;2.54e-14;31!CL:0000223;4.12e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!1.30e-38!19;UBERON:0006925!1.30e-38!19;UBERON:0008836!1.30e-38!19;UBERON:0008835!3.95e-33!22;UBERON:0003894!3.95e-33!22;UBERON:0009854!1.28e-31!23;UBERON:0007499!5.83e-29!25;UBERON:0009497!5.83e-29!25;UBERON:0000015!5.83e-29!25;UBERON:0002423!5.83e-29!25;UBERON:0006235!5.83e-29!25;UBERON:0004161!5.83e-29!25;UBERON:0005057!8.75e-28!26;UBERON:0009856!8.75e-28!26;UBERON:0002365!4.86e-23!31;UBERON:0002330!4.86e-23!31;UBERON:0002368!3.22e-20!35;UBERON:0003929!4.44e-18!54;UBERON:0000949!2.35e-15!45;UBERON:0002530!1.08e-13!59;UBERON:0004921!1.46e-13!129;UBERON:0004185!1.46e-13!129;UBERON:0005172!2.93e-12!55;UBERON:0005173!2.93e-12!55;UBERON:0005911!3.64e-11!82;UBERON:0002417!6.88e-11!61;UBERON:0000916!6.88e-11!61;UBERON:0001007!9.22e-11!155;UBERON:0001555!9.22e-11!155;UBERON:0007026!9.22e-11!155;UBERON:0004119!1.31e-09!169;UBERON:0000925!1.31e-09!169;UBERON:0006595!1.31e-09!169;UBERON:0000160!4.09e-09!27;UBERON:0006122!1.05e-08!1;UBERON:0005409!5.67e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.44e-52;19!UBERON:0006925;1.44e-52;19!UBERON:0002423;9.20e-40;25!UBERON:0002365;6.27e-31;31!UBERON:0002330;6.27e-31;31!UBERON:0002368;3.89e-27;33!UBERON:0002108;1.03e-22;4!UBERON:0000949;2.01e-19;43!UBERON:0000160;6.38e-17;17!UBERON:0001007;1.54e-14;81!UBERON:0005409;3.02e-13;22!UBERON:0005172;7.06e-12;52!UBERON:0005173;7.06e-12;52!UBERON:0002417;4.93e-11;58!UBERON:0000916;4.93e-11;58!UBERON:0002530;1.05e-09;57!UBERON:0004921;7.36e-08;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.48e-52,19;UBERON:0006925,1.48e-52,19;UBERON:0008836,1.48e-52,19;UBERON:0008835,2.78e-45,22;UBERON:0003894,2.78e-45,22;UBERON:0009854,2.80e-43,23;UBERON:0007499,9.41e-40,25;UBERON:0009497,9.41e-40,25;UBERON:0000015,9.41e-40,25;UBERON:0002423,9.41e-40,25;UBERON:0006235,9.41e-40,25;UBERON:0004161,9.41e-40,25;UBERON:0009856,3.42e-38,26;UBERON:0002365,6.76e-32,31;UBERON:0002330,6.76e-32,31;UBERON:0002368,3.76e-28,35;UBERON:0002108,8.56e-23,4;UBERON:0003929,4.60e-22,54;UBERON:0000949,1.08e-21,45;UBERON:0004921,7.07e-19,118;UBERON:0005172,6.41e-18,54;UBERON:0005173,6.41e-18,54;UBERON:0000160,5.86e-17,17;UBERON:0002530,2.56e-16,59;UBERON:0002417,4.97e-16,60;UBERON:0000916,4.97e-16,60;UBERON:0001007,4.46e-15,145;UBERON:0001555,4.46e-15,145;UBERON:0007026,4.46e-15,145;UBERON:0005911,3.91e-14,82;UBERON:0004119,1.64e-13,160;UBERON:0000925,1.64e-13,160;UBERON:0006595,1.64e-13,160;UBERON:0005409,9.68e-12,25;UBERON:0001041,9.74e-11,87;UBERON:0005177,4.21e-09,101;UBERON:0011216,4.60e-09,223;UBERON:0009569,4.21e-08,112;UBERON:0003914,1.04e-07,117;UBERON:0005256,2.39e-07,122;UBERON:0000490,2.85e-07,148 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.6185573125845,23.587853200263,17.1329072937607,0,1.72183813960359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.57602529119306,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.2594512186427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59223616106011,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0,0,3.49487848582361,6.14508821996344,6.34602109534982,5.86410831531409,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.06037285229453,10.6005511129777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62392137567012,3.49695296806332,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.645134202577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.6185573125845,23.587853200263,17.1329072937607,0,1.72183813960359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.57602529119306,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.2594512186427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59223616106011,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0,0,3.49487848582361,6.14508821996344,6.34602109534982,5.86410831531409,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.06037285229453,10.6005511129777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62392137567012,3.49695296806332,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.645134202577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p13@APOB | |||
}} | }} |
Latest revision as of 23:19, 19 September 2015
Short description: | p13@APOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_APOB_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -390bp_to_X03324_5end |
EntrezGene: | APOB |
HGNC: | 603 |
UniProt: | Q13789 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.05e-50 | 12 |
endodermal cell | 4.75e-13 | 58 |