MCL coexpression mm9:554: Difference between revisions
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{{MCL_coexpression_mm9 | {{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0,0.0176865466027567,0.0287562096962872,0,0,0,0,0,0,0,0,0,0,0,0.0462954977414998,0.0677288784250855,0.0841096302762223,0.0437972117714309,0.0123885855227832,0.0118176007585282,0.0125083062924525,0.0417385455199237,0.023896204410722,0.00495808864412905,0.00689972979822079,0,0,0.00651882189101563,0,0,0,0,0,0,0,0,0,0.200346628476838,0.139056823722408,0.17409124835715,0.111736707727009,0.0843957526823336,0.138225139306574,0.0253081065376525,0.0198401657916989,0.0276041055859846,0,0,0,0,0.00437689834516068,0,0,0,0.00967976526338223,0.0592278911837815,0.0151343990234598,0.0236756550098055,0,0,0,0,0,0.0124117679972697,0,0,0,0,0,0,0,0.0296380213626179,0.0122220052909148,0.00386021460641024,0,0,0,0,0,0,0,0,0,0,0,0,0.00444672526759497,0.0186110909033052,0.0663419917738608,0.054796124265212,0.0610476954297256,0,0,0,0,0,0.258291541938063,0,0,0,0,0,0,0,0,0,0,0.130294128056934,0.138094269855607,0.00924755683246152,0.0723104725348869,0.103126111596775,0.1126073172921,0.0573171077667749,0.0646245923239184,0,0.0134203026135604,0.0323828590943193,0.663063728047243,0.260988403565272,0.475351412177863,0.455948635630234,0,0,0,0,0.802554382335354,0.629179515038214,1.07560704061387,0,0,0,0.00535408487052572,0,0,0,0.0509888179480347,0.531497311918416,0,0.00638030251922798,0.0319292255664706,0,0,0.0669458303455501,0,0,0.00299222283960922,0.00768641501657145,0.0207725466871994,0.0115723999635288,0,0.023503832118802,0.00819591614804608,0.0176580748626738,0.00625144965612017,0.0407689314473108,0.78442960009221,0.954373204316393,1.68223553290019,0.0264498631521965,0.0403407658063426,0.00553114216835218,0,0.00600066159630395,0.00898346818839469,0,0,0.00737875809502915,0.00508937023266324,0.00507811211866191,0.00260410288326596,0,0,0.00420708467223183,0,0,0.016948243034698,0,0.0275294861312163,0.0470878228508707,0.0277184601628121,0.00613770053300172,0,0.0223296761880653,0,0,0.0149805637653579,0,0.00595037333853911,0,0,0,0.00580198029376426,0.0419569135753059,0,0.00619236148292216,0.0118441607034885,0.0105256278758065,0,0,0,0,0,0.216514779879378,0.294848043144307,0.415986291830518,0.418259692951735,0.51595832656105,0.462099177691769,0.448507151156218,0.47895307543312,0.363519361705708,0.233995542279298,0.221768559966009,0.0899388635612564,0,0.00551232084716164,0,0,0.00579702390318299,0.00942466011345285,0,0.0318925889804384,0.00965271822700777,0.036614658250972,0.0110075620502168,0.00915500073606015,0.00668314744747354,0,0.00506938302504768,0.00532164333399652,0,0,0.0323260918742761,0,0.00814070346658538,0,0,0.00507143903197677,0.136279093779724,0,0,0,0,0.0123113340672588,0.00832712009335508,0.0113552159212692,0,0,0,0.00443410139559367,0.142494638395302,0.151394454713855,0.00510113750097238,0,0.0548527315709607,0.0353055734015521,0.00577212169044109,0.034697538211001,0.00895539661385761,0.0680094746773688,0.0386608690975395,0.0382145491863412,0,0.0240492140886973,0.0236758399914901,0,0,0.00406399196575133,0.0129752677533141,0.0101412976071583,0,0,0,0.0221159738880292,0,0,0,0,0.00380466432808561,0.00376727482459363,0,0.00854522818220623,0.0654854558347016,0.525571026140898,0.203276266761203,0.419546099168502,0.401885291058518,0.176884315972482,0.207789311524659,0.285644729223731,0.331711076551051,0.380604524912349,0,0.0355462133167765,0.0295689046687585,0.0313198610607608,0.0289518683133754,0.0570430283104572,0.0602148917261597,0.0733221105893583,0.0140650650948368,0,0,0.0149347288449953,0.0555414897858571,0.0777879103870751,0.0650366025975997,0.0803314270920521,0.0526519218778885,0.0428743077577039,0.0249282166279643,0,0,0,0.0272988427187002,0.0602957682269758,0.0394235140066312,0.0192541598837543,0.040098674927737,0.0499476092510035,0.0282864818901352,0.0374466374116168,0.0281681836127574,0.0223548692245356,0.0247822038870926,0.0635578078734172,0.0436775634855446,0.0369407099832362,0.0286909499699458,0,0,0.00967164892129569,0,0.0106475348314118,0.010426700070666,0.00648849616236949,0,0,0,0,0,0,0,0,0,0,0,0.00959995502505903,0.0487304368579608,0.107655989349753,0.191152796385685,0.102463709151566,0.0709315249572084,0.0840465230186808,0.0708878024552875,0.0790171763471919,0.11085308197122,0.101313026181603,0.0989361783469362,0.105364480171129,0.11691805740595,0.104390566960046,0.0741772154974574,0.0984581847199044,0.114937168339992,0.0925468109553832,0.072467646406058,0.0568702544318268,0.104221984801056,0.0766824421681667,0.0855124850615524,0.0859017540413053,0.110847269799259,0.103262224820914,0.075452661509823,0.0988544063460101,0.0595291022971972,0.0984711201102793,0.0962793935432045,0.038218274375433,0.08843374616146,0.134155108908774,0.00744955354277052,0.189151978182307,0.151219869195959,0.0627450670555885,0.288143364280529,0.250093720771238|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151839024235742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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regulation of T-helper 2 cell differentiation;0.00613480101361967;16193!GO:0045624;positive regulation of T-helper cell differentiation;0.00613480101361967;16193!GO:0042832;defense response to protozoan;0.00613480101361967;16193!GO:0001781;neutrophil apoptosis;0.00613480101361967;16193!GO:0045079;negative regulation of chemokine biosynthetic process;0.00613480101361967;16193!GO:0005138;interleukin-6 receptor binding;0.00613480101361967;16193!GO:0045628;regulation of T-helper 2 cell differentiation;0.00613480101361967;16193!GO:0001562;response to protozoan;0.00613480101361967;16193!GO:0045064;T-helper 2 cell differentiation;0.00613480101361967;16193!GO:0045622;regulation of T-helper cell differentiation;0.00613480101361967;16193!GO:0001780;neutrophil homeostasis;0.00613480101361967;16193!GO:0042092;T-helper 2 type immune response;0.00613480101361967;16193!GO:0042744;hydrogen peroxide catabolic process;0.00613480101361967;17523!GO:0045073;regulation of chemokine biosynthetic process;0.00613480101361967;16193!GO:0050755;chemokine metabolic process;0.00613480101361967;16193!GO:0042033;chemokine biosynthetic process;0.00613480101361967;16193!GO:0002294;CD4-positive, alpha-beta T cell differentiation during immune response;0.00613480101361967;16193!GO:0002292;T cell differentiation during immune response;0.00613480101361967;16193!GO:0042093;T-helper cell differentiation;0.00613480101361967;16193!GO:0032602;chemokine production;0.00613480101361967;16193!GO:0002262;myeloid cell homeostasis;0.00613480101361967;16193!GO:0002285;lymphocyte activation during immune response;0.00613480101361967;16193!GO:0046888;negative regulation of hormone secretion;0.00613480101361967;16193!GO:0002293;alpha-beta T cell differentiation during immune response;0.00613480101361967;16193!GO:0002286;T cell activation during immune response;0.00613480101361967;16193!GO:0042743;hydrogen peroxide metabolic process;0.00616201967718473;17523!GO:0002366;leukocyte activation during immune response;0.00616201967718473;16193!GO:0002263;cell activation during immune response;0.00616201967718473;16193!GO:0042542;response to hydrogen peroxide;0.00639006753386264;17523!GO:0042036;negative regulation of cytokine biosynthetic process;0.00639006753386264;16193!GO:0043367;CD4-positive, alpha beta T cell differentiation;0.00680214356466494;16193!GO:0051048;negative regulation of secretion;0.0071884320133554;16193!GO:0006950;response to stress;0.00863425154760473;17523,16193!GO:0000302;response to reactive oxygen species;0.00901978866054937;17523!GO:0046883;regulation of hormone secretion;0.0109513998695545;16193!GO:0046632;alpha-beta T cell differentiation;0.011179247618428;16193!GO:0017148;negative regulation of translation;0.0127745320491999;16193!GO:0031327;negative regulation of cellular biosynthetic process;0.0127745320491999;16193!GO:0001776;leukocyte homeostasis;0.0127745320491999;16193!GO:0006953;acute-phase response;0.0129338591337989;16193!GO:0048872;homeostasis of number of cells;0.0130853885419302;16193!GO:0006800;oxygen and reactive oxygen species metabolic process;0.0132296772504845;17523!GO:0046631;alpha-beta T cell activation;0.0137438694796838;16193!GO:0009890;negative regulation of biosynthetic process;0.0137438694796838;16193!GO:0004601;peroxidase activity;0.0137438694796838;17523!GO:0016684;oxidoreductase activity, acting on peroxide as acceptor;0.0137438694796838;17523!GO:0005126;hematopoietin/interferon-class (D200-domain) cytokine receptor binding;0.0158945490724236;16193!GO:0046879;hormone secretion;0.0163606389997696;16193!GO:0006979;response to oxidative stress;0.0175884040074963;17523!GO:0042035;regulation of cytokine biosynthetic process;0.0191491912821177;16193!GO:0051046;regulation of secretion;0.0195235944556765;16193!GO:0042089;cytokine biosynthetic process;0.0216249667282421;16193!GO:0042107;cytokine metabolic process;0.0216249667282421;16193!GO:0030217;T cell differentiation;0.0216249667282421;16193!GO:0051248;negative regulation of protein metabolic process;0.0236636738328768;16193!GO:0002526;acute inflammatory response;0.0263106368820287;16193!GO:0003001;generation of a signal involved in cell-cell signaling;0.0288551655400247;16193!GO:0002250;adaptive immune response;0.0288551655400247;16193!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0288551655400247;16193!GO:0030098;lymphocyte differentiation;0.0293282650749003;16193!GO:0001816;cytokine production;0.0310364227731297;16193!GO:0005615;extracellular space;0.0328634828356414;17523,16193!GO:0020037;heme binding;0.0331563053314338;17523!GO:0046906;tetrapyrrole binding;0.0331563053314338;17523!GO:0042110;T cell activation;0.0346818569534329;16193!GO:0044421;extracellular region part;0.0346818569534329;17523,16193!GO:0002521;leukocyte differentiation;0.0362210529925595;16193!GO:0006417;regulation of translation;0.0368083864733086;16193!GO:0031326;regulation of cellular biosynthetic process;0.0384817291650034;16193!GO:0008083;growth factor activity;0.0406497293099706;16193!GO:0045595;regulation of cell differentiation;0.0411052176127616;16193!GO:0009889;regulation of biosynthetic process;0.0411052176127616;16193!GO:0051707;response to other organism;0.0428855709526981;16193!GO:0005764;lysosome;0.0432619566004032;17523!GO:0000323;lytic vacuole;0.0432619566004032;17523!GO:0046649;lymphocyte activation;0.0473162225814055;16193!GO:0005773;vacuole;0.0473162225814055;17523!GO:0045321;leukocyte activation;0.049194139494195;16193!GO:0030097;hemopoiesis;0.049194139494195;16193!GO:0006954;inflammatory response;0.049194139494195;16193!GO:0009607;response to biotic stimulus;0.049194139494195;16193!GO:0005125;cytokine activity;0.0497498975935377;16193!|ontology_enrichment_celltype=|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0000981!1.53e-10!4;UBERON:0003608!1.53e-10!4;UBERON:0003826!1.53e-10!4;UBERON:0008202!1.53e-10!4;UBERON:0004381!1.53e-10!4;UBERON:0007273!1.53e-10!4;UBERON:0010912!1.53e-10!4;UBERON:0002513!1.53e-10!4;UBERON:0004375!1.53e-10!4;UBERON:0010740!1.53e-10!4;UBERON:0010363!1.53e-10!4;UBERON:0003860!1.53e-10!4;UBERON:0002428!1.53e-10!4;UBERON:0010742!1.53e-10!4;UBERON:0002495!1.53e-10!4;UBERON:0003464!1.53e-10!4;UBERON:0003606!1.53e-10!4;UBERON:0005893!1.53e-10!4;UBERON:0009749!1.53e-10!4;UBERON:0010712!1.53e-10!4;UBERON:0010886!1.53e-10!4;UBERON:0005254!1.53e-10!4;UBERON:0010885!1.53e-10!4;UBERON:0010881!1.53e-10!4;UBERON:0010882!1.53e-10!4;UBERON:0007844!1.53e-10!4;UBERON:0001441!1.53e-10!4;UBERON:0011249!1.53e-10!4;UBERON:0002091!1.53e-10!4;UBERON:0003285!1.53e-10!4;UBERON:0004288!1.53e-10!4;UBERON:0010129!1.53e-10!4;UBERON:0006234!1.53e-10!4;UBERON:0002106!1.08e-09!6;UBERON:0004457!1.08e-09!6;UBERON:0000042!1.08e-09!6;UBERON:0004854!1.08e-09!6;UBERON:0009034!1.08e-09!6;UBERON:0002095!1.08e-09!6;UBERON:0004782!1.08e-09!6;UBERON:0003281!1.08e-09!6;UBERON:0009664!1.08e-09!6;UBERON:0002296!1.08e-09!6;UBERON:0005602!1.08e-09!6;UBERON:0001179!1.08e-09!6;UBERON:0006293!1.08e-09!6;UBERON:0005418!2.01e-08!5;UBERON:0002472!2.01e-08!5;UBERON:0008784!2.01e-08!5;UBERON:0006058!2.01e-08!5;UBERON:0004709!2.01e-08!5;UBERON:0002529!2.01e-08!5;UBERON:0010538!2.01e-08!5;UBERON:0005420!2.01e-08!5;UBERON:0010758!2.01e-08!5;UBERON:0000978!2.01e-08!5;UBERON:0002103!2.01e-08!5;UBERON:0000376!2.01e-08!5;UBERON:0000154!2.01e-08!5;UBERON:0010709!2.01e-08!5;UBERON:0005730!2.01e-08!5;UBERON:0003887!4.36e-08!10;UBERON:0005172!9.63e-08!49;UBERON:0005173!9.63e-08!49;UBERON:0002417!9.63e-08!49;UBERON:0000916!9.63e-08!49;UBERON:0002107!2.40e-07!22;UBERON:0007499!2.40e-07!22;UBERON:0006925!2.40e-07!22;UBERON:0009497!2.40e-07!22;UBERON:0000015!2.40e-07!22;UBERON:0002423!2.40e-07!22;UBERON:0006235!2.40e-07!22;UBERON:0008835!2.40e-07!22;UBERON:0003894!2.40e-07!22;UBERON:0004161!2.40e-07!22;UBERON:0008836!2.40e-07!22;UBERON:0000075!5.21e-07!6;UBERON:0005856!5.21e-07!6;UBERON:0005866!5.21e-07!6;UBERON:0005863!5.21e-07!6;UBERON:0009854!5.87e-07!23;UBERON:0009856!5.87e-07!23|tfbs_overrepresentation_for_novel_motifs=0.244604,0.341626,0.635766,0.279403,0.430128,0.291576,0.370193,0.566731,0.283485,0.742283,0.331725,0.35958,1.97828,0.992198,0.15081,0,0.557619,1.33631,0.069633,0.286444,1.07772,0.944339,0.38026,0.137915,0.64994,0.405649,0.501183,1.50756,0.171781,0.169823,0.297405,0.653099,0.131928,0.779896,0.151158,0.332588,0.125578,0.356403,0.111088,0.0929685,0.836384,0.815844,0.872686,0.463442,0.381636,0.270091,0.48361,0.322976,0.282668,0.517045,0.541299,0.429887,0.655868,0.788877,0.805733,0.387424,0.533349,0.920073,0.218496,0.385607,0.634076,0.438439,0.628157,0.5308,0.397364,0.568642,0.938213,1.28193,0.629645,1.13654,0.208654,0.277751,0.0836286,0.838198,0.0571922,0.0517462,0.0552358,0.473159,0.617814,1.09058,0.279684,0.573903,0.437131,0.932192,0.72691,0.0240533,0.00535506,0.385151,0.488122,1.44275,2.29907,0.731688,0.665283,0.143149,0.108477,0.0973538,0.264364,0.667958,0.483845,1.34415,0.396021,0.652833,0.772062,0.541854,1.33639,0.301427,0.596902,0.319507,0.201775,0.196131,1.2482,1.82272,0.577235,0.893019,1.01331,2.6187,0.037872,0.282562,0.558838,1.84696,0.843435,0.511336,0.407285,0.472327,1.06644,1.50588,0.377415,0.658832,0.936732,0.445937,0.755703,0.273302,0.907893,1.03283,1.03449,0.0163629,0.251471,0.303003,0.986296,1.80931,1.41113,0.942814,0.418119,0.66306,0.53483,0.302189,0.486482,1.76978,0.253405,0.140226,0.0455135,0.0139939,0.790393,1.12484,1.03101,0.869538,0.430798,0.159498,0.242603,0.251242,0.995609,0.726089,0.621734,0.237049,0.531751,0.392164,3.22931,0.358185,0.00980506|tfbs_overrepresentation_jaspar=MA0003.1;0.0157697,MA0004.1;0.279808,MA0006.1;0.14766,MA0007.1;0.267314,MA0009.1;0.678286,MA0014.1;0.166639,MA0017.1;1.53792,MA0019.1;0.506787,MA0024.1;0.636635,MA0025.1;0.9035,MA0027.1;2.3071,MA0028.1;0.155127,MA0029.1;0.616052,MA0030.1;0.622264,MA0031.1;0.588678,MA0038.1;0.405578,MA0040.1;0.690239,MA0041.1;0.622762,MA0042.1;0.207696,MA0043.1;0.771094,MA0046.1;0.712646,MA0048.1;0.602366,MA0050.1;0.312673,MA0051.1;0.413609,MA0052.1;0.697946,MA0055.1;0.183408,MA0056.1;0,MA0057.1;0.302463,MA0058.1;0.202403,MA0059.1;0.608499,MA0060.1;0.0941959,MA0061.1;0.113212,MA0063.1;0,MA0066.1;0.395746,MA0067.1;1.01206,MA0068.1;0.0328198,MA0069.1;0.698271,MA0070.1;0.688999,MA0071.1;0.311956,MA0072.1;0.680902,MA0073.1;0.0105271,MA0074.1;1.70003,MA0076.1;0.181159,MA0077.1;0.660245,MA0078.1;1.97224,MA0081.1;1.21585,MA0083.1;0.77033,MA0084.1;1.33532,MA0087.1;0.728855,MA0088.1;0.204026,MA0089.1;0,MA0090.1;0.251458,MA0091.1;2.20385,MA0092.1;0.251716,MA0093.1;0.161141,MA0095.1;0,MA0098.1;0,MA0100.1;0.931999,MA0101.1;0.219061,MA0103.1;0.174916,MA0105.1;0.434904,MA0106.1;0.450539,MA0107.1;0.170338,MA0108.2;1.30903,MA0109.1;0,MA0111.1;0.263095,MA0113.1;0.424958,MA0114.1;0.727901,MA0115.1;0.773793,MA0116.1;0.147513,MA0117.1;0.742722,MA0119.1;0.219527,MA0122.1;0.761823,MA0124.1;0.959967,MA0125.1;0.887718,MA0130.1;0,MA0131.1;0.502588,MA0132.1;0,MA0133.1;0,MA0135.1;0.806261,MA0136.1;1.76101,MA0139.1;0.0756871,MA0140.1;0.931776,MA0141.1;0.18979,MA0142.1;0.575041,MA0143.1;5.09722,MA0144.1;0.365041,MA0145.1;0.698105,MA0146.1;0.00215921,MA0147.1;0.121834,MA0148.1;0.293462,MA0149.1;0.223436,MA0062.2;0.0556611,MA0035.2;0.357786,MA0039.2;0.0150018,MA0138.2;0.495254,MA0002.2;0.266731,MA0137.2;0.187581,MA0104.2;0.0856657,MA0047.2;0.404891,MA0112.2;1.02934,MA0065.2;1.85775,MA0150.1;0.267221,MA0151.1;0,MA0152.1;0.404987,MA0153.1;0.822355,MA0154.1;0.139881,MA0155.1;0.484422,MA0156.1;1.02086,MA0157.1;0.545026,MA0158.1;0,MA0159.1;0.803691,MA0160.1;0.296006,MA0161.1;0,MA0162.1;0.0186388,MA0163.1;0.232458,MA0164.1;0.381832,MA0080.2;1.56168,MA0018.2;0.390455,MA0099.2;0.489441,MA0079.2;0.0905512,MA0102.2;1.38728,MA0258.1;1.1381,MA0259.1;0.114734,MA0442.1;0}} | ||
|coexpression_dpi_cluster_scores_mean=0,0.0176865466027567,0.0287562096962872,0,0,0,0,0,0,0,0,0,0,0,0.0462954977414998,0.0677288784250855,0.0841096302762223,0.0437972117714309,0.0123885855227832,0.0118176007585282,0.0125083062924525,0.0417385455199237,0.023896204410722,0.00495808864412905,0.00689972979822079,0,0,0.00651882189101563,0,0,0,0,0,0,0,0,0,0.200346628476838,0.139056823722408,0.17409124835715,0.111736707727009,0.0843957526823336,0.138225139306574,0.0253081065376525,0.0198401657916989,0.0276041055859846,0,0,0,0,0.00437689834516068,0,0,0,0.00967976526338223,0.0592278911837815,0.0151343990234598,0.0236756550098055,0,0,0,0,0,0.0124117679972697,0,0,0,0,0,0,0,0.0296380213626179,0.0122220052909148,0.00386021460641024,0,0,0,0,0,0,0,0,0,0,0,0,0.00444672526759497,0.0186110909033052,0.0663419917738608,0.054796124265212,0.0610476954297256,0,0,0,0,0,0.258291541938063,0,0,0,0,0,0,0,0,0,0,0.130294128056934,0.138094269855607,0.00924755683246152,0.0723104725348869,0.103126111596775,0.1126073172921,0.0573171077667749,0.0646245923239184,0,0.0134203026135604,0.0323828590943193,0.663063728047243,0.260988403565272,0.475351412177863,0.455948635630234,0,0,0,0,0.802554382335354,0.629179515038214,1.07560704061387,0,0,0,0.00535408487052572,0,0,0,0.0509888179480347,0.531497311918416,0,0.00638030251922798,0.0319292255664706,0,0,0.0669458303455501,0,0,0.00299222283960922,0.00768641501657145,0.0207725466871994,0.0115723999635288,0,0.023503832118802,0.00819591614804608,0.0176580748626738,0.00625144965612017,0.0407689314473108,0.78442960009221,0.954373204316393,1.68223553290019,0.0264498631521965,0.0403407658063426,0.00553114216835218,0,0.00600066159630395,0.00898346818839469,0,0,0.00737875809502915,0.00508937023266324,0.00507811211866191,0.00260410288326596,0,0,0.00420708467223183,0,0,0.016948243034698,0,0.0275294861312163,0.0470878228508707,0.0277184601628121,0.00613770053300172,0,0.0223296761880653,0,0,0.0149805637653579,0,0.00595037333853911,0,0,0,0.00580198029376426,0.0419569135753059,0,0.00619236148292216,0.0118441607034885,0.0105256278758065,0,0,0,0,0,0.216514779879378,0.294848043144307,0.415986291830518,0.418259692951735,0.51595832656105,0.462099177691769,0.448507151156218,0.47895307543312,0.363519361705708,0.233995542279298,0.221768559966009,0.0899388635612564,0,0.00551232084716164,0,0,0.00579702390318299,0.00942466011345285,0,0.0318925889804384,0.00965271822700777,0.036614658250972,0.0110075620502168,0.00915500073606015,0.00668314744747354,0,0.00506938302504768,0.00532164333399652,0,0,0.0323260918742761,0,0.00814070346658538,0,0,0.00507143903197677,0.136279093779724,0,0,0,0,0.0123113340672588,0.00832712009335508,0.0113552159212692,0,0,0,0.00443410139559367,0.142494638395302,0.151394454713855,0.00510113750097238,0,0.0548527315709607,0.0353055734015521,0.00577212169044109,0.034697538211001,0.00895539661385761,0.0680094746773688,0.0386608690975395,0.0382145491863412,0,0.0240492140886973,0.0236758399914901,0,0,0.00406399196575133,0.0129752677533141,0.0101412976071583,0,0,0,0.0221159738880292,0,0,0,0,0.00380466432808561,0.00376727482459363,0,0.00854522818220623,0.0654854558347016,0.525571026140898,0.203276266761203,0.419546099168502,0.401885291058518,0.176884315972482,0.207789311524659,0.285644729223731,0.331711076551051,0.380604524912349,0,0.0355462133167765,0.0295689046687585,0.0313198610607608,0.0289518683133754,0.0570430283104572,0.0602148917261597,0.0733221105893583,0.0140650650948368,0,0,0.0149347288449953,0.0555414897858571,0.0777879103870751,0.0650366025975997,0.0803314270920521,0.0526519218778885,0.0428743077577039,0.0249282166279643,0,0,0,0.0272988427187002,0.0602957682269758,0.0394235140066312,0.0192541598837543,0.040098674927737,0.0499476092510035,0.0282864818901352,0.0374466374116168,0.0281681836127574,0.0223548692245356,0.0247822038870926,0.0635578078734172,0.0436775634855446,0.0369407099832362,0.0286909499699458,0,0,0.00967164892129569,0,0.0106475348314118,0.010426700070666,0.00648849616236949,0,0,0,0,0,0,0,0,0,0,0,0.00959995502505903,0.0487304368579608,0.107655989349753,0.191152796385685,0.102463709151566,0.0709315249572084,0.0840465230186808,0.0708878024552875,0.0790171763471919,0.11085308197122,0.101313026181603,0.0989361783469362,0.105364480171129,0.11691805740595,0.104390566960046,0.0741772154974574,0.0984581847199044,0.114937168339992,0.0925468109553832,0.072467646406058,0.0568702544318268,0.104221984801056,0.0766824421681667,0.0855124850615524,0.0859017540413053,0.110847269799259,0.103262224820914,0.075452661509823,0.0988544063460101,0.0595291022971972,0.0984711201102793,0.0962793935432045,0.038218274375433,0.08843374616146,0.134155108908774,0.00744955354277052,0.189151978182307,0.151219869195959,0.0627450670555885,0.288143364280529,0.250093720771238 | |||
| | |||
}} |
Latest revision as of 15:30, 17 September 2013
Phase1 CAGE Peaks
Short description | |
---|---|
Mm9::chr10:79343871..79343908,- | p@chr10:79343871..79343908 - |
Mm9::chr10:79350840..79350867,- | p@chr10:79350840..79350867 - |
Mm9::chr11:87607311..87607330,+ | p6@Mpo |
Mm9::chr11:87607521..87607534,+ | p2@Mpo |
Mm9::chr11:87607708..87607714,+ | p5@Mpo |
Mm9::chr11:87608023..87608038,+ | p@chr11:87608023..87608038 + |
Mm9::chr11:87610847..87610872,- | p@chr11:87610847..87610872 - |
Mm9::chr11:87610875..87610882,- | p@chr11:87610875..87610882 - |
Mm9::chr11:87610927..87610949,- | p@chr11:87610927..87610949 - |
Mm9::chr11:87611085..87611092,+ | p@chr11:87611085..87611092 + |
Mm9::chr11:87611115..87611124,- | p@chr11:87611115..87611124 - |
Mm9::chr11:87614594..87614611,- | p1@ENSMUST00000130442 |
Mm9::chr5:30339681..30339683,+ | p1@Il6 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0045630 | positive regulation of T-helper 2 cell differentiation | 0.00613480101361967 |
GO:0045624 | positive regulation of T-helper cell differentiation | 0.00613480101361967 |
GO:0042832 | defense response to protozoan | 0.00613480101361967 |
GO:0001781 | neutrophil apoptosis | 0.00613480101361967 |
GO:0045079 | negative regulation of chemokine biosynthetic process | 0.00613480101361967 |
GO:0005138 | interleukin-6 receptor binding | 0.00613480101361967 |
GO:0045628 | regulation of T-helper 2 cell differentiation | 0.00613480101361967 |
GO:0001562 | response to protozoan | 0.00613480101361967 |
GO:0045064 | T-helper 2 cell differentiation | 0.00613480101361967 |
GO:0045622 | regulation of T-helper cell differentiation | 0.00613480101361967 |
GO:0001780 | neutrophil homeostasis | 0.00613480101361967 |
GO:0042092 | T-helper 2 type immune response | 0.00613480101361967 |
GO:0042744 | hydrogen peroxide catabolic process | 0.00613480101361967 |
GO:0045073 | regulation of chemokine biosynthetic process | 0.00613480101361967 |
GO:0050755 | chemokine metabolic process | 0.00613480101361967 |
GO:0042033 | chemokine biosynthetic process | 0.00613480101361967 |
GO:0002294 | CD4-positive, alpha-beta T cell differentiation during immune response | 0.00613480101361967 |
GO:0002292 | T cell differentiation during immune response | 0.00613480101361967 |
GO:0042093 | T-helper cell differentiation | 0.00613480101361967 |
GO:0032602 | chemokine production | 0.00613480101361967 |
GO:0002262 | myeloid cell homeostasis | 0.00613480101361967 |
GO:0002285 | lymphocyte activation during immune response | 0.00613480101361967 |
GO:0046888 | negative regulation of hormone secretion | 0.00613480101361967 |
GO:0002293 | alpha-beta T cell differentiation during immune response | 0.00613480101361967 |
GO:0002286 | T cell activation during immune response | 0.00613480101361967 |
GO:0042743 | hydrogen peroxide metabolic process | 0.00616201967718473 |
GO:0002366 | leukocyte activation during immune response | 0.00616201967718473 |
GO:0002263 | cell activation during immune response | 0.00616201967718473 |
GO:0042542 | response to hydrogen peroxide | 0.00639006753386264 |
GO:0042036 | negative regulation of cytokine biosynthetic process | 0.00639006753386264 |
GO:0043367 | CD4-positive, alpha beta T cell differentiation | 0.00680214356466494 |
GO:0051048 | negative regulation of secretion | 0.0071884320133554 |
GO:0006950 | response to stress | 0.00863425154760473 |
GO:0000302 | response to reactive oxygen species | 0.00901978866054937 |
GO:0046883 | regulation of hormone secretion | 0.0109513998695545 |
GO:0046632 | alpha-beta T cell differentiation | 0.011179247618428 |
GO:0017148 | negative regulation of translation | 0.0127745320491999 |
GO:0031327 | negative regulation of cellular biosynthetic process | 0.0127745320491999 |
GO:0001776 | leukocyte homeostasis | 0.0127745320491999 |
GO:0006953 | acute-phase response | 0.0129338591337989 |
GO:0048872 | homeostasis of number of cells | 0.0130853885419302 |
GO:0006800 | oxygen and reactive oxygen species metabolic process | 0.0132296772504845 |
GO:0046631 | alpha-beta T cell activation | 0.0137438694796838 |
GO:0009890 | negative regulation of biosynthetic process | 0.0137438694796838 |
GO:0004601 | peroxidase activity | 0.0137438694796838 |
GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | 0.0137438694796838 |
GO:0005126 | hematopoietin/interferon-class (D200-domain) cytokine receptor binding | 0.0158945490724236 |
GO:0046879 | hormone secretion | 0.0163606389997696 |
GO:0006979 | response to oxidative stress | 0.0175884040074963 |
GO:0042035 | regulation of cytokine biosynthetic process | 0.0191491912821177 |
GO:0051046 | regulation of secretion | 0.0195235944556765 |
GO:0042089 | cytokine biosynthetic process | 0.0216249667282421 |
GO:0042107 | cytokine metabolic process | 0.0216249667282421 |
GO:0030217 | T cell differentiation | 0.0216249667282421 |
GO:0051248 | negative regulation of protein metabolic process | 0.0236636738328768 |
GO:0002526 | acute inflammatory response | 0.0263106368820287 |
GO:0003001 | generation of a signal involved in cell-cell signaling | 0.0288551655400247 |
GO:0002250 | adaptive immune response | 0.0288551655400247 |
GO:0002460 | adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains | 0.0288551655400247 |
GO:0030098 | lymphocyte differentiation | 0.0293282650749003 |
GO:0001816 | cytokine production | 0.0310364227731297 |
GO:0005615 | extracellular space | 0.0328634828356414 |
GO:0020037 | heme binding | 0.0331563053314338 |
GO:0046906 | tetrapyrrole binding | 0.0331563053314338 |
GO:0042110 | T cell activation | 0.0346818569534329 |
GO:0044421 | extracellular region part | 0.0346818569534329 |
GO:0002521 | leukocyte differentiation | 0.0362210529925595 |
GO:0006417 | regulation of translation | 0.0368083864733086 |
GO:0031326 | regulation of cellular biosynthetic process | 0.0384817291650034 |
GO:0008083 | growth factor activity | 0.0406497293099706 |
GO:0045595 | regulation of cell differentiation | 0.0411052176127616 |
GO:0009889 | regulation of biosynthetic process | 0.0411052176127616 |
GO:0051707 | response to other organism | 0.0428855709526981 |
GO:0005764 | lysosome | 0.0432619566004032 |
GO:0000323 | lytic vacuole | 0.0432619566004032 |
GO:0046649 | lymphocyte activation | 0.0473162225814055 |
GO:0005773 | vacuole | 0.0473162225814055 |
GO:0045321 | leukocyte activation | 0.049194139494195 |
GO:0030097 | hemopoiesis | 0.049194139494195 |
GO:0006954 | inflammatory response | 0.049194139494195 |
GO:0009607 | response to biotic stimulus | 0.049194139494195 |
GO:0005125 | cytokine activity | 0.0497498975935377 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 0.0157697 |
MA0004.1 | 0.279808 |
MA0006.1 | 0.14766 |
MA0007.1 | 0.267314 |
MA0009.1 | 0.678286 |
MA0014.1 | 0.166639 |
MA0017.1 | 1.53792 |
MA0019.1 | 0.506787 |
MA0024.1 | 0.636635 |
MA0025.1 | 0.9035 |
MA0027.1 | 2.3071 |
MA0028.1 | 0.155127 |
MA0029.1 | 0.616052 |
MA0030.1 | 0.622264 |
MA0031.1 | 0.588678 |
MA0038.1 | 0.405578 |
MA0040.1 | 0.690239 |
MA0041.1 | 0.622762 |
MA0042.1 | 0.207696 |
MA0043.1 | 0.771094 |
MA0046.1 | 0.712646 |
MA0048.1 | 0.602366 |
MA0050.1 | 0.312673 |
MA0051.1 | 0.413609 |
MA0052.1 | 0.697946 |
MA0055.1 | 0.183408 |
MA0056.1 | 0 |
MA0057.1 | 0.302463 |
MA0058.1 | 0.202403 |
MA0059.1 | 0.608499 |
MA0060.1 | 0.0941959 |
MA0061.1 | 0.113212 |
MA0063.1 | 0 |
MA0066.1 | 0.395746 |
MA0067.1 | 1.01206 |
MA0068.1 | 0.0328198 |
MA0069.1 | 0.698271 |
MA0070.1 | 0.688999 |
MA0071.1 | 0.311956 |
MA0072.1 | 0.680902 |
MA0073.1 | 0.0105271 |
MA0074.1 | 1.70003 |
MA0076.1 | 0.181159 |
MA0077.1 | 0.660245 |
MA0078.1 | 1.97224 |
MA0081.1 | 1.21585 |
MA0083.1 | 0.77033 |
MA0084.1 | 1.33532 |
MA0087.1 | 0.728855 |
MA0088.1 | 0.204026 |
MA0089.1 | 0 |
MA0090.1 | 0.251458 |
MA0091.1 | 2.20385 |
MA0092.1 | 0.251716 |
MA0093.1 | 0.161141 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.931999 |
MA0101.1 | 0.219061 |
MA0103.1 | 0.174916 |
MA0105.1 | 0.434904 |
MA0106.1 | 0.450539 |
MA0107.1 | 0.170338 |
MA0108.2 | 1.30903 |
MA0109.1 | 0 |
MA0111.1 | 0.263095 |
MA0113.1 | 0.424958 |
MA0114.1 | 0.727901 |
MA0115.1 | 0.773793 |
MA0116.1 | 0.147513 |
MA0117.1 | 0.742722 |
MA0119.1 | 0.219527 |
MA0122.1 | 0.761823 |
MA0124.1 | 0.959967 |
MA0125.1 | 0.887718 |
MA0130.1 | 0 |
MA0131.1 | 0.502588 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 0.806261 |
MA0136.1 | 1.76101 |
MA0139.1 | 0.0756871 |
MA0140.1 | 0.931776 |
MA0141.1 | 0.18979 |
MA0142.1 | 0.575041 |
MA0143.1 | 5.09722 |
MA0144.1 | 0.365041 |
MA0145.1 | 0.698105 |
MA0146.1 | 0.00215921 |
MA0147.1 | 0.121834 |
MA0148.1 | 0.293462 |
MA0149.1 | 0.223436 |
MA0062.2 | 0.0556611 |
MA0035.2 | 0.357786 |
MA0039.2 | 0.0150018 |
MA0138.2 | 0.495254 |
MA0002.2 | 0.266731 |
MA0137.2 | 0.187581 |
MA0104.2 | 0.0856657 |
MA0047.2 | 0.404891 |
MA0112.2 | 1.02934 |
MA0065.2 | 1.85775 |
MA0150.1 | 0.267221 |
MA0151.1 | 0 |
MA0152.1 | 0.404987 |
MA0153.1 | 0.822355 |
MA0154.1 | 0.139881 |
MA0155.1 | 0.484422 |
MA0156.1 | 1.02086 |
MA0157.1 | 0.545026 |
MA0158.1 | 0 |
MA0159.1 | 0.803691 |
MA0160.1 | 0.296006 |
MA0161.1 | 0 |
MA0162.1 | 0.0186388 |
MA0163.1 | 0.232458 |
MA0164.1 | 0.381832 |
MA0080.2 | 1.56168 |
MA0018.2 | 0.390455 |
MA0099.2 | 0.489441 |
MA0079.2 | 0.0905512 |
MA0102.2 | 1.38728 |
MA0258.1 | 1.1381 |
MA0259.1 | 0.114734 |
MA0442.1 | 0 |