FFCP PHASE1:Hg19::chr9:124976154..124976177,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26468 | |EntrezGene=26468 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21735 | |HGNC=21735 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000482062_5end | |association_with_transcript=0bp_to_ENST00000482062_5end | ||
|cluster_id=chr9:124976154..124976177,- | |||
|description=CAGE_peak_5_at_LHX6_5end | |description=CAGE_peak_5_at_LHX6_5end | ||
|id=chr9:124976154..124976177,- | |id=chr9:124976154..124976177,- | ||
|ontology_enrichment_celltype=CL:0000066!2.22e-14!254;CL:0000223!9.44e-09!59;CL:0000039!9.03e-08!7;CL:0000586!9.03e-08!7;CL:0002322!1.66e-07!5;CL:0002076!6.00e-07!43 | |ontology_enrichment_celltype=CL:0000066!2.22e-14!254;CL:0000223!9.44e-09!59;CL:0000039!9.03e-08!7;CL:0000586!9.03e-08!7;CL:0002322!1.66e-07!5;CL:0002076!6.00e-07!43 | ||
|ontology_enrichment_celltype_v019=CL:0000039;1.43e-13;7!CL:0000586;1.43e-13;7!CL:0002535;9.13e-09;2!CL:0002322;2.41e-07;5!CL:0000082;5.35e-07;19 | |ontology_enrichment_celltype_v019=CL:0000039;1.43e-13;7!CL:0000586;1.43e-13;7!CL:0002535;9.13e-09;2!CL:0002322;2.41e-07;5!CL:0000082;5.35e-07;19 | ||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.38e-13,7;CL:0000586,1.38e-13,7;CL:0002535,8.31e-09,2;CL:0000066,1.23e-07,253;CL:0002322,3.54e-07,5;CL:0000082,4.77e-07,19 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:0050687!3.06e-26!143;DOID:162!5.71e-26!235;DOID:14566!7.42e-25!239;DOID:305!1.33e-23!106;DOID:0050686!7.17e-10!137;DOID:4362!6.97e-08!5;DOID:3905!9.51e-08!9;DOID:1325!1.24e-07!7;DOID:3904!1.24e-07!7;DOID:1749!2.78e-07!14;DOID:1036!7.28e-07!8 | |ontology_enrichment_disease=DOID:0050687!3.06e-26!143;DOID:162!5.71e-26!235;DOID:14566!7.42e-25!239;DOID:305!1.33e-23!106;DOID:0050686!7.17e-10!137;DOID:4362!6.97e-08!5;DOID:3905!9.51e-08!9;DOID:1325!1.24e-07!7;DOID:3904!1.24e-07!7;DOID:1749!2.78e-07!14;DOID:1036!7.28e-07!8 | ||
|ontology_enrichment_disease_v019=DOID:4362;5.00e-13;5!DOID:1036;6.85e-12;8!DOID:0050615;2.29e-11;16!DOID:3905;6.31e-11;9!DOID:1325;1.42e-09;7!DOID:3904;1.42e-09;7!DOID:1749;1.58e-09;14!DOID:1324;4.66e-09;15!DOID:1909;3.91e-08;2!DOID:3908;1.15e-07;5 | |ontology_enrichment_disease_v019=DOID:4362;5.00e-13;5!DOID:1036;6.85e-12;8!DOID:0050615;2.29e-11;16!DOID:3905;6.31e-11;9!DOID:1325;1.42e-09;7!DOID:3904;1.42e-09;7!DOID:1749;1.58e-09;14!DOID:1324;4.66e-09;15!DOID:1909;3.91e-08;2!DOID:3908;1.15e-07;5 | ||
|ontology_enrichment_disease_v019_2=DOID:162,8.80e-18,235;DOID:14566,3.23e-17,239;DOID:0050687,1.91e-16,143;DOID:305,2.98e-16,106;DOID:4362,4.65e-13,5;DOID:0050686,2.39e-12,137;DOID:1036,4.43e-12,8;DOID:0050615,1.88e-11,16;DOID:3905,4.93e-11,9;DOID:1749,1.23e-09,14;DOID:1325,1.47e-09,7;DOID:3904,1.47e-09,7;DOID:1324,4.02e-09,15;DOID:3908,8.51e-08,5;DOID:1909,8.74e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0000002!1.99e-08!6;UBERON:0001560!1.99e-08!6;UBERON:0005153!7.92e-07!37 | |ontology_enrichment_uberon=UBERON:0000002!1.99e-08!6;UBERON:0001560!1.99e-08!6;UBERON:0005153!7.92e-07!37 | ||
|ontology_enrichment_uberon_v019=UBERON:0000002;7.33e-11;6!UBERON:0001560;7.33e-11;6!UBERON:0006955;9.13e-09;2!UBERON:0004801;9.13e-09;2!UBERON:0000473;7.92e-08;8!UBERON:0004802;5.35e-07;19!UBERON:0000115;5.35e-07;19!UBERON:0000922;9.71e-07;49 | |ontology_enrichment_uberon_v019=UBERON:0000002;7.33e-11;6!UBERON:0001560;7.33e-11;6!UBERON:0006955;9.13e-09;2!UBERON:0004801;9.13e-09;2!UBERON:0000473;7.92e-08;8!UBERON:0004802;5.35e-07;19!UBERON:0000115;5.35e-07;19!UBERON:0000922;9.71e-07;49 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000002,6.90e-11,6;UBERON:0001560,6.90e-11,6;UBERON:0006955,8.31e-09,2;UBERON:0004801,8.31e-09,2;UBERON:0000473,7.87e-08,8;UBERON:0004802,4.77e-07,19;UBERON:0000115,4.77e-07,19;UBERON:0005153,6.56e-07,37 | |||
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| ||
|short_description=p5@LHX6 | |short_description=p5@LHX6 | ||
}} | }} |
Latest revision as of 22:06, 24 September 2015
Short description: | p5@LHX6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LHX6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000482062_5end |
EntrezGene: | LHX6 |
HGNC: | 21735 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.38e-13 | 7 |
germ cell | 1.38e-13 | 7 |
epithelial cell of cervix | 8.31e-09 | 2 |
epithelial cell | 1.23e-07 | 253 |
embryonic stem cell | 3.54e-07 | 5 |
epithelial cell of lung | 4.77e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
uterine cervix | 6.90e-11 | 6 |
neck of organ | 6.90e-11 | 6 |
uterine epithelium | 8.31e-09 | 2 |
cervix epithelium | 8.31e-09 | 2 |
testis | 7.87e-08 | 8 |
respiratory tract epithelium | 4.77e-07 | 19 |
lung epithelium | 4.77e-07 | 19 |
epithelial bud | 6.56e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
cancer | 8.80e-18 | 235 |
disease of cellular proliferation | 3.23e-17 | 239 |
cell type cancer | 1.91e-16 | 143 |
carcinoma | 2.98e-16 | 106 |
cervical cancer | 4.65e-13 | 5 |
organ system cancer | 2.39e-12 | 137 |
chronic leukemia | 4.43e-12 | 8 |
respiratory system cancer | 1.88e-11 | 16 |
lung carcinoma | 4.93e-11 | 9 |
squamous cell carcinoma | 1.23e-09 | 14 |
bronchus cancer | 1.47e-09 | 7 |
bronchogenic carcinoma | 1.47e-09 | 7 |
lung cancer | 4.02e-09 | 15 |
non-small cell lung carcinoma | 8.51e-08 | 5 |
melanoma | 8.74e-08 | 2 |