FFCP PHASE1:Hg19::chr14:57277178..57277203,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5015 | |EntrezGene=5015 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8522 | |HGNC=8522 | ||
|TSSclassifier=strong | |||
|UniProt=F1T0D1,F1T0C9,G3V3J3,P32243 | |UniProt=F1T0D1,F1T0C9,G3V3J3,P32243 | ||
|association_with_transcript=0bp_to_ENST00000339475,ENST00000554559,ENST00000555804,NM_021728,uc001xcq.2_5end | |association_with_transcript=0bp_to_ENST00000339475,ENST00000554559,ENST00000555804,NM_021728,uc001xcq.2_5end | ||
|cluster_id=chr14:57277178..57277203,- | |||
|coexpression_cluster_id=C535 | |coexpression_cluster_id=C535 | ||
|description=CAGE_peak_1_at_OTX2_5end | |description=CAGE_peak_1_at_OTX2_5end | ||
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|ontology_enrichment_celltype=CL:0002319!1.88e-18!25;CL:0000133!3.07e-17!59;CL:0000047!3.33e-17!8;CL:0000221!2.68e-13!71;CL:0000540!3.47e-13!6;CL:0000031!3.47e-13!6;CL:0000404!3.47e-13!6;CL:0002322!5.14e-13!5;CL:0000128!1.24e-11!7;CL:0000126!1.24e-11!7;CL:0000127!1.24e-11!7;CL:0002453!1.24e-11!7;CL:0002586!7.15e-09!3;CL:0000147!3.60e-08!14;CL:0000243!6.30e-08!15;CL:0000125!6.30e-08!15;CL:0000030!6.30e-08!15;CL:0000339!6.30e-08!15;CL:0000333!1.05e-07!41;CL:0002605!1.09e-07!3;CL:0002603!1.12e-07!3;CL:0000095!6.14e-07!17;CL:0000123!6.14e-07!17 | |ontology_enrichment_celltype=CL:0002319!1.88e-18!25;CL:0000133!3.07e-17!59;CL:0000047!3.33e-17!8;CL:0000221!2.68e-13!71;CL:0000540!3.47e-13!6;CL:0000031!3.47e-13!6;CL:0000404!3.47e-13!6;CL:0002322!5.14e-13!5;CL:0000128!1.24e-11!7;CL:0000126!1.24e-11!7;CL:0000127!1.24e-11!7;CL:0002453!1.24e-11!7;CL:0002586!7.15e-09!3;CL:0000147!3.60e-08!14;CL:0000243!6.30e-08!15;CL:0000125!6.30e-08!15;CL:0000030!6.30e-08!15;CL:0000339!6.30e-08!15;CL:0000333!1.05e-07!41;CL:0002605!1.09e-07!3;CL:0002603!1.12e-07!3;CL:0000095!6.14e-07!17;CL:0000123!6.14e-07!17 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.16e-19;5!CL:0002586;4.13e-13;3!CL:0000147;5.76e-13;14!CL:0002319;5.35e-12;25!CL:0000149;6.18e-10;4!CL:0002321;9.10e-09;15!CL:0000128;1.18e-08;7!CL:0000126;1.18e-08;7!CL:0000127;1.18e-08;7!CL:0002549;3.31e-08;2!CL:0000047;4.29e-08;2!CL:0000243;1.22e-07;15!CL:0000125;1.22e-07;15!CL:0000095;9.10e-07;17 | |ontology_enrichment_celltype_v019=CL:0002322;1.16e-19;5!CL:0002586;4.13e-13;3!CL:0000147;5.76e-13;14!CL:0002319;5.35e-12;25!CL:0000149;6.18e-10;4!CL:0002321;9.10e-09;15!CL:0000128;1.18e-08;7!CL:0000126;1.18e-08;7!CL:0000127;1.18e-08;7!CL:0002549;3.31e-08;2!CL:0000047;4.29e-08;2!CL:0000243;1.22e-07;15!CL:0000125;1.22e-07;15!CL:0000095;9.10e-07;17 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.13e-19,5;CL:0002586,4.05e-13,3;CL:0000147,5.60e-13,14;CL:0002319,5.25e-12,25;CL:0000133,5.80e-12,59;CL:0000149,6.09e-10,4;CL:0000221,3.08e-09,72;CL:0000128,1.14e-08,7;CL:0000126,1.14e-08,7;CL:0000127,1.14e-08,7;CL:0002453,1.14e-08,7;CL:0000333,1.56e-08,41;CL:0002549,3.77e-08,2;CL:0000243,1.19e-07,15;CL:0000125,1.19e-07,15;CL:0000030,1.19e-07,15;CL:0000339,1.19e-07,15;CL:0000047,2.32e-07,8;CL:0000095,8.95e-07,17;CL:0000123,8.95e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.71e-12;3!CL:0000339;1.22e-07;15!CL:0000133;4.64e-07;59 | |ontology_enrichment_development_v019=UBERON:0006215;1.71e-12;3!CL:0000339;1.22e-07;15!CL:0000133;4.64e-07;59 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!8.73e-77!86;UBERON:0000073!1.70e-73!94;UBERON:0001016!1.70e-73!94;UBERON:0001017!4.46e-68!82;UBERON:0000955!8.34e-53!69;UBERON:0006238!8.34e-53!69;UBERON:0002616!3.40e-49!59;UBERON:0001049!3.60e-48!57;UBERON:0005068!3.60e-48!57;UBERON:0006241!3.60e-48!57;UBERON:0007135!3.60e-48!57;UBERON:0002346!5.74e-48!90;UBERON:0003075!7.61e-46!86;UBERON:0007284!7.61e-46!86;UBERON:0000924!1.84e-39!173;UBERON:0006601!1.84e-39!173;UBERON:0004121!2.00e-37!169;UBERON:0000033!1.78e-34!123;UBERON:0000153!8.85e-34!129;UBERON:0007811!8.85e-34!129;UBERON:0003056!2.08e-30!61;UBERON:0002780!1.03e-27!41;UBERON:0001890!1.03e-27!41;UBERON:0006240!1.03e-27!41;UBERON:0003080!6.66e-27!42;UBERON:0004733!9.65e-27!12;UBERON:0002028!9.65e-27!12;UBERON:0007277!9.65e-27!12;UBERON:0004732!1.90e-24!13;UBERON:0003076!3.14e-24!15;UBERON:0003057!3.14e-24!15;UBERON:0002680!5.03e-20!9;UBERON:0001895!5.03e-20!9;UBERON:0010092!5.03e-20!9;UBERON:0002308!1.93e-18!9;UBERON:0000125!1.93e-18!9;UBERON:0001893!3.14e-18!34;UBERON:0002020!3.60e-18!34;UBERON:0003528!3.60e-18!34;UBERON:0007023!2.32e-17!115;UBERON:0002791!6.78e-17!33;UBERON:0001869!3.82e-15!32;UBERON:0009663!1.10e-14!7;UBERON:0002037!1.89e-14!6;UBERON:0006215!1.89e-14!6;UBERON:0002420!1.94e-14!9;UBERON:0007245!1.94e-14!9;UBERON:0010009!1.94e-14!9;UBERON:0010011!1.94e-14!9;UBERON:0000454!1.94e-14!9;UBERON:0002298!6.16e-14!8;UBERON:0000966!9.48e-14!5;UBERON:0005388!9.48e-14!5;UBERON:0001802!9.48e-14!5;UBERON:0001894!8.71e-13!7;UBERON:0006222!8.71e-13!7;UBERON:0000369!6.40e-09!4;UBERON:0002435!6.40e-09!4;UBERON:0000204!6.40e-09!4;UBERON:0010082!6.40e-09!4;UBERON:0001781!7.15e-09!3;UBERON:0001782!7.15e-09!3;UBERON:0005424!7.15e-09!3;UBERON:0000025!1.45e-08!194;UBERON:0001896!2.09e-08!3;UBERON:0005290!2.09e-08!3;UBERON:0010096!2.09e-08!3;UBERON:0006331!1.51e-07!3;UBERON:0000988!2.86e-07!3;UBERON:0005383!3.50e-07!3;UBERON:0005382!3.50e-07!3;UBERON:0000970!5.24e-07!20;UBERON:0000956!8.76e-07!25;UBERON:0000203!8.76e-07!25 | |ontology_enrichment_uberon=UBERON:0005743!8.73e-77!86;UBERON:0000073!1.70e-73!94;UBERON:0001016!1.70e-73!94;UBERON:0001017!4.46e-68!82;UBERON:0000955!8.34e-53!69;UBERON:0006238!8.34e-53!69;UBERON:0002616!3.40e-49!59;UBERON:0001049!3.60e-48!57;UBERON:0005068!3.60e-48!57;UBERON:0006241!3.60e-48!57;UBERON:0007135!3.60e-48!57;UBERON:0002346!5.74e-48!90;UBERON:0003075!7.61e-46!86;UBERON:0007284!7.61e-46!86;UBERON:0000924!1.84e-39!173;UBERON:0006601!1.84e-39!173;UBERON:0004121!2.00e-37!169;UBERON:0000033!1.78e-34!123;UBERON:0000153!8.85e-34!129;UBERON:0007811!8.85e-34!129;UBERON:0003056!2.08e-30!61;UBERON:0002780!1.03e-27!41;UBERON:0001890!1.03e-27!41;UBERON:0006240!1.03e-27!41;UBERON:0003080!6.66e-27!42;UBERON:0004733!9.65e-27!12;UBERON:0002028!9.65e-27!12;UBERON:0007277!9.65e-27!12;UBERON:0004732!1.90e-24!13;UBERON:0003076!3.14e-24!15;UBERON:0003057!3.14e-24!15;UBERON:0002680!5.03e-20!9;UBERON:0001895!5.03e-20!9;UBERON:0010092!5.03e-20!9;UBERON:0002308!1.93e-18!9;UBERON:0000125!1.93e-18!9;UBERON:0001893!3.14e-18!34;UBERON:0002020!3.60e-18!34;UBERON:0003528!3.60e-18!34;UBERON:0007023!2.32e-17!115;UBERON:0002791!6.78e-17!33;UBERON:0001869!3.82e-15!32;UBERON:0009663!1.10e-14!7;UBERON:0002037!1.89e-14!6;UBERON:0006215!1.89e-14!6;UBERON:0002420!1.94e-14!9;UBERON:0007245!1.94e-14!9;UBERON:0010009!1.94e-14!9;UBERON:0010011!1.94e-14!9;UBERON:0000454!1.94e-14!9;UBERON:0002298!6.16e-14!8;UBERON:0000966!9.48e-14!5;UBERON:0005388!9.48e-14!5;UBERON:0001802!9.48e-14!5;UBERON:0001894!8.71e-13!7;UBERON:0006222!8.71e-13!7;UBERON:0000369!6.40e-09!4;UBERON:0002435!6.40e-09!4;UBERON:0000204!6.40e-09!4;UBERON:0010082!6.40e-09!4;UBERON:0001781!7.15e-09!3;UBERON:0001782!7.15e-09!3;UBERON:0005424!7.15e-09!3;UBERON:0000025!1.45e-08!194;UBERON:0001896!2.09e-08!3;UBERON:0005290!2.09e-08!3;UBERON:0010096!2.09e-08!3;UBERON:0006331!1.51e-07!3;UBERON:0000988!2.86e-07!3;UBERON:0005383!3.50e-07!3;UBERON:0005382!3.50e-07!3;UBERON:0000970!5.24e-07!20;UBERON:0000956!8.76e-07!25;UBERON:0000203!8.76e-07!25 | ||
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| ||
|short_description=p1@OTX2 | |short_description=p1@OTX2 | ||
}} | }} |
Latest revision as of 17:47, 24 September 2015
Short description: | p1@OTX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_OTX2_5end |
Coexpression cluster: | C535_medulloblastoma_small_pineal_retinoblastoma_eye_Retinal_retina |
Association with transcript: | 0bp_to_ENST00000339475, ENST00000554559, ENST00000555804, NM_021728, uc001xcq.2_5end |
EntrezGene: | OTX2 |
HGNC: | 8522 |
UniProt: | F1T0D1F1T0C9G3V3J3P32243 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.13e-19 | 5 |
retinal pigment epithelial cell | 4.05e-13 | 3 |
pigment cell | 5.60e-13 | 14 |
neural cell | 5.25e-12 | 25 |
neurectodermal cell | 5.80e-12 | 59 |
visual pigment cell | 6.09e-10 | 4 |
ectodermal cell | 3.08e-09 | 72 |
oligodendrocyte | 1.14e-08 | 7 |
macroglial cell | 1.14e-08 | 7 |
astrocyte | 1.14e-08 | 7 |
oligodendrocyte precursor cell | 1.14e-08 | 7 |
migratory neural crest cell | 1.56e-08 | 41 |
fibroblast of choroid plexus | 3.77e-08 | 2 |
glial cell (sensu Vertebrata) | 1.19e-07 | 15 |
glial cell | 1.19e-07 | 15 |
glioblast | 1.19e-07 | 15 |
glioblast (sensu Vertebrata) | 1.19e-07 | 15 |
neuronal stem cell | 2.32e-07 | 8 |
neuron associated cell | 8.95e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 8.95e-07 | 17 |