FFCP PHASE1:Hg19::chr3:87040106..87040123,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389136 | |EntrezGene=389136 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24327 | |HGNC=24327 | ||
|TSSclassifier=strong | |||
|UniProt=A8MV65 | |UniProt=A8MV65 | ||
|association_with_transcript=133bp_to_ENST00000398399,NM_016206,uc003dqn.2_5end | |association_with_transcript=133bp_to_ENST00000398399,NM_016206,uc003dqn.2_5end | ||
|cluster_id=chr3:87040106..87040123,- | |||
|coexpression_cluster_id=C2757 | |coexpression_cluster_id=C2757 | ||
|description=CAGE_peak_4_at_VGLL3_5end | |description=CAGE_peak_4_at_VGLL3_5end | ||
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|ontology_enrichment_celltype=CL:0000055!2.71e-25!180;CL:0000057!6.57e-22!75;CL:0002620!7.97e-12!23;CL:0000680!5.04e-09!57;CL:0000056!5.04e-09!57;CL:0000355!5.04e-09!57;CL:0000187!7.50e-08!54;CL:0000183!9.36e-08!59;CL:0000222!4.04e-07!119;CL:0000393!4.77e-07!60;CL:0000211!4.77e-07!60;CL:0000136!7.40e-07!15 | |ontology_enrichment_celltype=CL:0000055!2.71e-25!180;CL:0000057!6.57e-22!75;CL:0002620!7.97e-12!23;CL:0000680!5.04e-09!57;CL:0000056!5.04e-09!57;CL:0000355!5.04e-09!57;CL:0000187!7.50e-08!54;CL:0000183!9.36e-08!59;CL:0000222!4.04e-07!119;CL:0000393!4.77e-07!60;CL:0000211!4.77e-07!60;CL:0000136!7.40e-07!15 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.83e-13;23!CL:0000057;1.59e-09;73!CL:0000134;4.07e-09;55!CL:0000723;8.90e-08;61!CL:0002320;9.81e-08;188!CL:0000349;1.67e-07;19!CL:0000048;2.46e-07;58!CL:0000136;4.57e-07;13 | |ontology_enrichment_celltype_v019=CL:0002620;2.83e-13;23!CL:0000057;1.59e-09;73!CL:0000134;4.07e-09;55!CL:0000723;8.90e-08;61!CL:0002320;9.81e-08;188!CL:0000349;1.67e-07;19!CL:0000048;2.46e-07;58!CL:0000136;4.57e-07;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.04e-24,76;CL:0002620,2.50e-13,23;CL:0000680,3.93e-09,58;CL:0000056,3.93e-09,58;CL:0000355,3.93e-09,58;CL:0000187,7.47e-08,55;CL:0000349,1.15e-07,19;CL:0000136,1.23e-07,15 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.77e-12!83;UBERON:0002329!1.77e-12!83;UBERON:0003077!1.77e-12!83;UBERON:0003059!1.77e-12!83;UBERON:0007282!1.77e-12!83;UBERON:0009618!1.77e-12!83;UBERON:0007285!1.77e-12!83;UBERON:0000486!9.73e-12!82;UBERON:0003102!2.95e-11!95;UBERON:0004290!5.00e-11!70;UBERON:0002199!1.12e-10!45;UBERON:0002416!1.12e-10!45;UBERON:0004923!1.97e-10!57;UBERON:0005256!4.75e-10!143;UBERON:0002100!7.66e-10!216;UBERON:0000475!1.20e-09!365;UBERON:0002097!1.32e-09!40;UBERON:0000478!4.17e-09!24;UBERON:0002385!9.47e-09!63;UBERON:0001015!9.47e-09!63;UBERON:0000383!9.47e-09!63;UBERON:0001134!9.76e-09!61;UBERON:0002036!9.76e-09!61;UBERON:0003082!9.76e-09!61;UBERON:0003104!5.95e-08!238;UBERON:0009142!5.95e-08!238;UBERON:0000468!7.21e-08!659;UBERON:0000481!8.78e-08!347;UBERON:0005631!8.20e-07!14;UBERON:0000158!8.20e-07!14 | |ontology_enrichment_uberon=UBERON:0000914!1.77e-12!83;UBERON:0002329!1.77e-12!83;UBERON:0003077!1.77e-12!83;UBERON:0003059!1.77e-12!83;UBERON:0007282!1.77e-12!83;UBERON:0009618!1.77e-12!83;UBERON:0007285!1.77e-12!83;UBERON:0000486!9.73e-12!82;UBERON:0003102!2.95e-11!95;UBERON:0004290!5.00e-11!70;UBERON:0002199!1.12e-10!45;UBERON:0002416!1.12e-10!45;UBERON:0004923!1.97e-10!57;UBERON:0005256!4.75e-10!143;UBERON:0002100!7.66e-10!216;UBERON:0000475!1.20e-09!365;UBERON:0002097!1.32e-09!40;UBERON:0000478!4.17e-09!24;UBERON:0002385!9.47e-09!63;UBERON:0001015!9.47e-09!63;UBERON:0000383!9.47e-09!63;UBERON:0001134!9.76e-09!61;UBERON:0002036!9.76e-09!61;UBERON:0003082!9.76e-09!61;UBERON:0003104!5.95e-08!238;UBERON:0009142!5.95e-08!238;UBERON:0000468!7.21e-08!659;UBERON:0000481!8.78e-08!347;UBERON:0005631!8.20e-07!14;UBERON:0000158!8.20e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;3.03e-10;24!UBERON:0002097;5.98e-08;41!UBERON:0002199;8.16e-08;46!UBERON:0002416;8.16e-08;46!UBERON:0002384;1.04e-07;198 | |ontology_enrichment_uberon_v019=UBERON:0000478;3.03e-10;24!UBERON:0002097;5.98e-08;41!UBERON:0002199;8.16e-08;46!UBERON:0002416;8.16e-08;46!UBERON:0002384;1.04e-07;198 | ||
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|phase1_expression=15.4426622379973,14.5588356245869,22.6936590594514,12.0087958023756,9.83314407740033,11.3404008133048,10.1319951267324,2.52687949370732,3.3954131665979,6.14334841253772,1.39560233594486,7.8638893966862,3.9565046734268,3.96052329472149,6.62794751455832,0,0.602694528023977,0.730310090387373,2.92759679274304,0.738726348460727,4.48801520737357,2.19418305034661,1.71741592278634,0.684372125364421,4.77062030460251,0,0,0,0,0,0.154816123316076,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,4.02420515822182,7.92747883429888,0.361439152384566,2.00535164254356,4.05570253090306,0,0,6.61743720148475,11.0864698731282,15.1075831392177,1.44076983047484,0,0.370784442784429,0,0,0,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0.550236083880135,0.835979866147242,0.258416759169329,0.35576626268671,1.00416183829401,0,0,0.24406205754817,0,0.81014194788176,1.7859945656816,1.12264686313085,2.47745257063309,0,0,0,0,0,0,19.8788780678127,6.20489507156441,25.422562716138,5.44989579422746,3.90135220418193,2.80338800071154,3.20246987189115,0.98667019366864,6.84664277879486,4.98429486657846,3.10577615915572,1.81628913173918,4.60940739583999,9.60717870518566,11.5499228427219,3.99330275081114,5.82849854152024,7.98554590777601,12.1404708276099,9.2697532423484,6.53293348015658,2.33385202892359,9.81594921169772,9.50402285825643,15.5778165445491,14.5625817910084,7.90479955997862,3.36672227908132,5.25497783462249,14.1302698896933,10.0964852802593,25.4384870513186,9.76547382892879,3.17610112848059,20.809197739908,24.5590997141353,32.0017170750938,15.3046459003045,24.7326070172253,21.3841648237872,17.4949844951694,10.126579934476,9.84113752128106,22.2141721334821,28.5354685791128,6.95078044320891,13.4903645156313,7.05264687593482,10.0040749463188,0.193260853163297,0.545492241181669,0.286804595389004,0,0.265059536642971,0,0.621966330092223,0.756962552626885,0.72995471815166,40.6768784057521,39.8809381679589,0,55.2597834358055,29.597058748453,3.90412440131485,2.02301628093722,6.02527574708705,4.41175890929576,3.7039505495709,5.45722423955522,2.02246962240247,2.35465758150415,3.46272441251751,0.738155454624648,11.2193419042757,2.8810180793198,1.47008711385542,0,0,0,0,0.491953754172454,4.28919525746314,0.98775256867763,0,0.100528972411631,0.648119116109707,5.53874119027552,2.07986957055916,10.1031939417691,0.231860809950154,24.1861910125793,0.144366447761074,0,0.380508304469197,0,0,0,0,0,0,1.00789276919316,0,0.626909658919938,0.290633938513962,0.383382679165211,0,0,0.207328115540772,0,0,0.063497894292169,0,0,1.71072446022705,0.205654985406647,0,0,4.48524337381443,7.84728123899904,8.72725601269305,18.4858553533622,10.7296933755565,5.071816515336,9.57377219705534,11.4408180602503,2.57207374262142,2.83698264046557,4.26275486425759,7.29187767656553,0,2.46972101034231,6.18898750158097,5.68627117988073,5.543663110534,2.41151501647669,4.35766729300147,8.59767724165691,0,0,0,9.34536936417172,5.7430967917057,1.42636905040718,20.993289466799,9.65738715986802,15.5783038018709,0,0,0,0,0.508189248444927,0,0.773288812777695,0.502548796003046,0.637938751653163,0,0,0,7.36148950314839,10.0034104211935,11.6643960190886,20.7970861530807,29.4407831515317,16.5587535785631,13.3541213091693,12.0378439891088,9.09630016223939,2.0694614258501,9.96338397803155,9.21845842708516,10.1653828927657,1.37060810223918,4.11772108573027,0,0,0,2.42502057157008,4.99306318531491,4.83824469327489,23.5702417427838,11.5096479966047,7.29716245525991,27.6780562392314,13.3043884757343,14.6377068240683,10.3892646511494,3.39261326365842,7.45759246315134,3.69572202062141,1.55776328755086,4.76462551685833,0.966875596732978,1.60405176242628,0.184161977871793,1.60740227430449,3.64182336013434,2.49136388422906,1.35359883872224,1.77135275340154,0.784349769176855,0,0.949964660035881,0,0.170093705276516,5.39789790255348,1.54227252690289,1.89662506280697,0.501689773854853,0.764628819135115,0.831076008928724,0.223874754722178,0,0,0.256450125116389,1.64007322849853,1.95227036798582,35.7552310417596,0.183138929636687,0.247528499761764,2.29706215198469,1.95018073810956,19.2820715812991,3.48014585851639,10.0131601124519,9.82423518247229,15.0241864008138,10.204923262486,12.036385594881,13.2953538769117,9.70449188549437,0,2.30628080838127,1.65896526242959,0.6069466851333,9.29691098594571,15.1109926478707,2.0911118104818,1.84820148105653,0.532306030317022,0.869932992075073,1.11194531462352,1.71749864090389,6.32669227911434,12.655176988749,25.7350761797164,3.83846686967001,9.41465773674625,4.77304871888905,0,11.3319648277488,9.05972198128981,7.30436894543256,1.41527737101321,1.58510321173008,1.26377536871694,8.28977356452303,0.487426979262569,0,4.36799716505554,3.67654123079653,4.52032466480971,3.30819206127675,1.32687795048244,2.63070531152258,5.20897980840019,1.9676842561399,2.63783490051515,4.0277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| ||
|short_description=p4@VGLL3 | |short_description=p4@VGLL3 | ||
}} | }} |
Latest revision as of 18:23, 19 September 2015
Short description: | p4@VGLL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_VGLL3_5end |
Coexpression cluster: | C2757_bronchogenic_placenta_small_oral_bone_Hair_chorionic |
Association with transcript: | 133bp_to_ENST00000398399, NM_016206, uc003dqn.2_5end |
EntrezGene: | VGLL3 |
HGNC: | 24327 |
UniProt: | A8MV65 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.04e-24 | 76 |
skin fibroblast | 2.50e-13 | 23 |
muscle precursor cell | 3.93e-09 | 58 |
myoblast | 3.93e-09 | 58 |
multi-potent skeletal muscle stem cell | 3.93e-09 | 58 |
muscle cell | 7.47e-08 | 55 |
extraembryonic cell | 1.15e-07 | 19 |
fat cell | 1.23e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
integument | 1.06e-11 | 46 |
integumental system | 1.06e-11 | 46 |
multilaminar epithelium | 1.09e-11 | 83 |
somite | 2.37e-11 | 71 |
presomitic mesoderm | 2.37e-11 | 71 |
presumptive segmental plate | 2.37e-11 | 71 |
dermomyotome | 2.37e-11 | 71 |
trunk paraxial mesoderm | 2.37e-11 | 71 |
dense mesenchyme tissue | 2.75e-11 | 73 |
paraxial mesoderm | 6.20e-11 | 72 |
presumptive paraxial mesoderm | 6.20e-11 | 72 |
epithelial vesicle | 1.51e-10 | 78 |
skin of body | 1.79e-10 | 41 |
extraembryonic structure | 2.06e-10 | 24 |
organ component layer | 1.26e-09 | 66 |
surface structure | 6.02e-09 | 99 |
skeletal muscle tissue | 1.07e-08 | 62 |
striated muscle tissue | 1.07e-08 | 62 |
myotome | 1.07e-08 | 62 |
muscle tissue | 1.69e-08 | 64 |
musculature | 1.69e-08 | 64 |
musculature of body | 1.69e-08 | 64 |
trunk mesenchyme | 5.97e-08 | 122 |
extraembryonic membrane | 1.38e-07 | 14 |
membranous layer | 1.38e-07 | 14 |
mesenchyme | 9.53e-07 | 160 |
entire embryonic mesenchyme | 9.53e-07 | 160 |