FFCP PHASE1:Hg19::chr17:48149430..48149463,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3675 | |EntrezGene=3675 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6139 | |HGNC=6139 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-60bp_to_ENST00000510809_5end | |association_with_transcript=-60bp_to_ENST00000510809_5end | ||
|cluster_id=chr17:48149430..48149463,+ | |||
|coexpression_cluster_id=C3652 | |coexpression_cluster_id=C3652 | ||
|description=CAGE_peak_5_at_ITGA3_5end | |description=CAGE_peak_5_at_ITGA3_5end | ||
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|ontology_enrichment_celltype=CL:0000066!2.32e-27!254;CL:0000220!4.37e-21!246;CL:0002321!1.82e-20!248;CL:0002076!2.07e-11!43;CL:1000449!1.69e-10!16;CL:1000497!4.27e-10!18;CL:0002518!4.27e-10!18;CL:0000077!2.47e-09!19;CL:0002681!1.31e-08!13;CL:0002584!1.31e-08!13;CL:0000222!2.23e-08!119;CL:1000507!2.39e-08!12;CL:1000494!2.39e-08!12;CL:0000223!2.41e-08!59;CL:0000548!2.63e-08!679;CL:0000004!2.63e-08!679;CL:0000255!2.63e-08!679;CL:0000012!7.10e-08!682;CL:0000076!6.85e-07!62 | |ontology_enrichment_celltype=CL:0000066!2.32e-27!254;CL:0000220!4.37e-21!246;CL:0002321!1.82e-20!248;CL:0002076!2.07e-11!43;CL:1000449!1.69e-10!16;CL:1000497!4.27e-10!18;CL:0002518!4.27e-10!18;CL:0000077!2.47e-09!19;CL:0002681!1.31e-08!13;CL:0002584!1.31e-08!13;CL:0000222!2.23e-08!119;CL:1000507!2.39e-08!12;CL:1000494!2.39e-08!12;CL:0000223!2.41e-08!59;CL:0000548!2.63e-08!679;CL:0000004!2.63e-08!679;CL:0000255!2.63e-08!679;CL:0000012!7.10e-08!682;CL:0000076!6.85e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:1000497;1.86e-16;17!CL:0002518;1.86e-16;17!CL:1000449;2.58e-16;15!CL:1000507;3.27e-15;10!CL:1000494;3.27e-15;10!CL:0002681;2.20e-12;12!CL:0002584;2.20e-12;12!CL:0002076;1.49e-10;42!CL:0000077;3.67e-09;19!CL:0000244;1.22e-07;4!CL:0000731;1.22e-07;4!CL:0002368;1.37e-07;13 | |ontology_enrichment_celltype_v019=CL:1000497;1.86e-16;17!CL:0002518;1.86e-16;17!CL:1000449;2.58e-16;15!CL:1000507;3.27e-15;10!CL:1000494;3.27e-15;10!CL:0002681;2.20e-12;12!CL:0002584;2.20e-12;12!CL:0002076;1.49e-10;42!CL:0000077;3.67e-09;19!CL:0000244;1.22e-07;4!CL:0000731;1.22e-07;4!CL:0002368;1.37e-07;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.77e-28,253;CL:1000497,7.29e-17,17;CL:0002518,7.29e-17,17;CL:1000449,1.04e-16,15;CL:1000507,1.30e-15,10;CL:1000494,1.30e-15,10;CL:0002076,3.29e-14,42;CL:0002321,8.01e-14,250;CL:0002681,1.18e-12,12;CL:0002584,1.18e-12,12;CL:0000223,8.70e-12,58;CL:0000077,2.38e-09,19;CL:0000076,4.91e-09,63;CL:0002368,1.07e-07,13;CL:0000244,1.35e-07,4;CL:0000731,1.35e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000223;4.64e-07;58 | |ontology_enrichment_development_v019=CL:0000223;4.64e-07;58 | ||
|ontology_enrichment_disease=DOID:193!1.28e-09!29;DOID:120!2.71e-09!27 | |ontology_enrichment_disease=DOID:193!1.28e-09!29;DOID:120!2.71e-09!27 | ||
|ontology_enrichment_disease_v019=DOID:193;9.63e-09;29!DOID:120;2.34e-08;27 | |ontology_enrichment_disease_v019=DOID:193;9.63e-09;29!DOID:120;2.34e-08;27 | ||
|ontology_enrichment_disease_v019_2=DOID:193,9.53e-09,29;DOID:120,2.27e-08,27 | |||
|ontology_enrichment_uberon=UBERON:0000481!2.78e-11!347;UBERON:0005256!1.22e-10!143;UBERON:0004211!1.69e-10!16;UBERON:0001285!1.69e-10!16;UBERON:0007684!1.69e-10!16;UBERON:0003220!1.69e-10!16;UBERON:0004208!1.69e-10!16;UBERON:0003104!2.62e-10!238;UBERON:0009142!2.62e-10!238;UBERON:0006555!2.00e-09!17;UBERON:0005103!2.00e-09!17;UBERON:0000083!2.00e-09!17;UBERON:0009201!2.00e-09!17;UBERON:0004819!2.00e-09!17;UBERON:0006553!2.00e-09!17;UBERON:0003074!2.00e-09!17;UBERON:0003060!2.00e-09!17;UBERON:0000353!7.39e-09!17;UBERON:0000058!9.76e-09!26;UBERON:0001225!1.31e-08!13;UBERON:0008987!1.31e-08!13;UBERON:0000080!1.74e-08!18;UBERON:0002120!1.74e-08!18;UBERON:0004875!1.74e-08!18;UBERON:0005721!1.74e-08!18;UBERON:0005754!1.74e-08!18;UBERON:0007297!1.74e-08!18;UBERON:0009773!2.39e-08!12;UBERON:0001231!2.39e-08!12;UBERON:0004810!2.39e-08!12;UBERON:0000119!3.17e-08!312;UBERON:0004876!3.38e-08!20;UBERON:0000483!4.45e-08!309;UBERON:0000486!4.91e-08!82;UBERON:0006554!5.46e-08!44;UBERON:0001008!1.51e-07!45;UBERON:0002100!1.93e-07!216;UBERON:0001851!2.27e-07!16;UBERON:0003887!2.56e-07!21;UBERON:0003064!4.65e-07!37;UBERON:0005085!6.47e-07!29;UBERON:0000475!7.64e-07!365 | |ontology_enrichment_uberon=UBERON:0000481!2.78e-11!347;UBERON:0005256!1.22e-10!143;UBERON:0004211!1.69e-10!16;UBERON:0001285!1.69e-10!16;UBERON:0007684!1.69e-10!16;UBERON:0003220!1.69e-10!16;UBERON:0004208!1.69e-10!16;UBERON:0003104!2.62e-10!238;UBERON:0009142!2.62e-10!238;UBERON:0006555!2.00e-09!17;UBERON:0005103!2.00e-09!17;UBERON:0000083!2.00e-09!17;UBERON:0009201!2.00e-09!17;UBERON:0004819!2.00e-09!17;UBERON:0006553!2.00e-09!17;UBERON:0003074!2.00e-09!17;UBERON:0003060!2.00e-09!17;UBERON:0000353!7.39e-09!17;UBERON:0000058!9.76e-09!26;UBERON:0001225!1.31e-08!13;UBERON:0008987!1.31e-08!13;UBERON:0000080!1.74e-08!18;UBERON:0002120!1.74e-08!18;UBERON:0004875!1.74e-08!18;UBERON:0005721!1.74e-08!18;UBERON:0005754!1.74e-08!18;UBERON:0007297!1.74e-08!18;UBERON:0009773!2.39e-08!12;UBERON:0001231!2.39e-08!12;UBERON:0004810!2.39e-08!12;UBERON:0000119!3.17e-08!312;UBERON:0004876!3.38e-08!20;UBERON:0000483!4.45e-08!309;UBERON:0000486!4.91e-08!82;UBERON:0006554!5.46e-08!44;UBERON:0001008!1.51e-07!45;UBERON:0002100!1.93e-07!216;UBERON:0001851!2.27e-07!16;UBERON:0003887!2.56e-07!21;UBERON:0003064!4.65e-07!37;UBERON:0005085!6.47e-07!29;UBERON:0000475!7.64e-07!365 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;2.58e-16;15!UBERON:0004819;2.58e-16;15!UBERON:0001285;2.58e-16;15!UBERON:0007684;2.58e-16;15!UBERON:0004211;3.27e-15;10!UBERON:0009773;3.27e-15;10!UBERON:0001231;3.27e-15;10!UBERON:0004810;3.27e-15;10!UBERON:0006554;6.60e-14;30!UBERON:0001008;6.60e-14;30!UBERON:0000353;1.09e-13;15!UBERON:0001225;2.20e-12;12!UBERON:0008987;2.20e-12;12!UBERON:0002113;1.61e-10;24!UBERON:0011143;1.61e-10;24!UBERON:0001851;2.03e-09;15!UBERON:0000489;4.46e-08;29 | |ontology_enrichment_uberon_v019=UBERON:0006555;2.58e-16;15!UBERON:0004819;2.58e-16;15!UBERON:0001285;2.58e-16;15!UBERON:0007684;2.58e-16;15!UBERON:0004211;3.27e-15;10!UBERON:0009773;3.27e-15;10!UBERON:0001231;3.27e-15;10!UBERON:0004810;3.27e-15;10!UBERON:0006554;6.60e-14;30!UBERON:0001008;6.60e-14;30!UBERON:0000353;1.09e-13;15!UBERON:0001225;2.20e-12;12!UBERON:0008987;2.20e-12;12!UBERON:0002113;1.61e-10;24!UBERON:0011143;1.61e-10;24!UBERON:0001851;2.03e-09;15!UBERON:0000489;4.46e-08;29 | ||
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| ||
|short_description=p5@ITGA3 | |short_description=p5@ITGA3 | ||
}} | }} |
Latest revision as of 22:26, 15 September 2015
Short description: | p5@ITGA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ITGA3_5end |
Coexpression cluster: | C3652_Bronchial_meningioma_papillary_Prostate_mesenchymal_Tracheal_Urothelial |
Association with transcript: | -60bp_to_ENST00000510809_5end |
EntrezGene: | ITGA3 |
HGNC: | 6139 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.77e-28 | 253 |
kidney cell | 7.29e-17 | 17 |
kidney epithelial cell | 7.29e-17 | 17 |
epithelial cell of nephron | 1.04e-16 | 15 |
kidney tubule cell | 1.30e-15 | 10 |
nephron tubule epithelial cell | 1.30e-15 | 10 |
endo-epithelial cell | 3.29e-14 | 42 |
embryonic cell | 8.01e-14 | 250 |
kidney cortical cell | 1.18e-12 | 12 |
renal cortical epithelial cell | 1.18e-12 | 12 |
endodermal cell | 8.70e-12 | 58 |
mesothelial cell | 2.38e-09 | 19 |
squamous epithelial cell | 4.91e-09 | 63 |
respiratory epithelial cell | 1.07e-07 | 13 |
transitional epithelial cell | 1.35e-07 | 4 |
urothelial cell | 1.35e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 1.04e-16 | 15 |
renal tubule | 1.04e-16 | 15 |
nephron tubule | 1.04e-16 | 15 |
nephron | 1.04e-16 | 15 |
uriniferous tubule | 1.04e-16 | 15 |
nephrogenic mesenchyme | 1.04e-16 | 15 |
nephron tubule epithelium | 1.30e-15 | 10 |
excretory tube | 1.97e-15 | 16 |
kidney epithelium | 1.97e-15 | 16 |
parenchyma | 4.17e-14 | 15 |
cortex of kidney | 1.18e-12 | 12 |
renal parenchyma | 1.18e-12 | 12 |
urinary system structure | 1.33e-10 | 47 |
renal system | 2.93e-10 | 48 |
kidney | 1.14e-09 | 26 |
kidney mesenchyme | 1.14e-09 | 26 |
upper urinary tract | 1.14e-09 | 26 |
kidney rudiment | 1.14e-09 | 26 |
kidney field | 1.14e-09 | 26 |
cortex | 1.26e-09 | 15 |
cavitated compound organ | 1.59e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
reproductive organ cancer | 9.53e-09 | 29 |
female reproductive organ cancer | 2.27e-08 | 27 |