FFCP PHASE1:Hg19::chr19:42806590..42806657,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5050 | |EntrezGene=5050 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8576 | |HGNC=8576 | ||
|TSSclassifier=strong | |||
|UniProt=Q15102 | |UniProt=Q15102 | ||
|association_with_transcript=138bp_to_ENST00000262890,NM_002573,uc002otg.2_5end | |association_with_transcript=138bp_to_ENST00000262890,NM_002573,uc002otg.2_5end | ||
|cluster_id=chr19:42806590..42806657,- | |||
|coexpression_cluster_id=C1824 | |coexpression_cluster_id=C1824 | ||
|description=CAGE_peak_2_at_PAFAH1B3_5end | |description=CAGE_peak_2_at_PAFAH1B3_5end | ||
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|ontology_enrichment_celltype=CL:0000066!1.00e-26!254;CL:0002321!3.29e-18!248;CL:0000220!9.28e-18!246;CL:0000012!3.12e-09!682;CL:0000221!8.50e-09!71;CL:1000449!1.40e-08!16;CL:0000548!1.91e-08!679;CL:0000004!1.91e-08!679;CL:0000255!1.91e-08!679;CL:1000497!2.64e-08!18;CL:0002518!2.64e-08!18;CL:0002319!3.69e-08!25;CL:0000133!4.56e-07!59;CL:0002681!5.03e-07!13;CL:0002584!5.03e-07!13;CL:1000507!6.62e-07!12;CL:1000494!6.62e-07!12 | |ontology_enrichment_celltype=CL:0000066!1.00e-26!254;CL:0002321!3.29e-18!248;CL:0000220!9.28e-18!246;CL:0000012!3.12e-09!682;CL:0000221!8.50e-09!71;CL:1000449!1.40e-08!16;CL:0000548!1.91e-08!679;CL:0000004!1.91e-08!679;CL:0000255!1.91e-08!679;CL:1000497!2.64e-08!18;CL:0002518!2.64e-08!18;CL:0002319!3.69e-08!25;CL:0000133!4.56e-07!59;CL:0002681!5.03e-07!13;CL:0002584!5.03e-07!13;CL:1000507!6.62e-07!12;CL:1000494!6.62e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:1000449;7.56e-09;15!CL:1000497;1.98e-08;17!CL:0002518;1.98e-08;17!CL:0002319;4.57e-08;25!CL:0002681;2.94e-07;12!CL:0002584;2.94e-07;12!CL:1000507;4.17e-07;10!CL:1000494;4.17e-07;10 | |ontology_enrichment_celltype_v019=CL:1000449;7.56e-09;15!CL:1000497;1.98e-08;17!CL:0002518;1.98e-08;17!CL:0002319;4.57e-08;25!CL:0002681;2.94e-07;12!CL:0002584;2.94e-07;12!CL:1000507;4.17e-07;10!CL:1000494;4.17e-07;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.55e-26,253;CL:0002321,1.97e-18,250;CL:1000449,8.79e-09,15;CL:0000221,1.07e-08,72;CL:1000497,1.86e-08,17;CL:0002518,1.86e-08,17;CL:0002319,3.57e-08,25;CL:0002681,3.24e-07,12;CL:0002584,3.24e-07,12;CL:1000507,4.20e-07,10;CL:1000494,4.20e-07,10;CL:0000133,4.72e-07,59 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!1.09e-19!235;DOID:14566!8.31e-19!239;DOID:0050686!5.84e-15!137;DOID:1240!5.40e-11!39;DOID:2531!7.56e-11!51;DOID:0060083!7.56e-11!51;DOID:8692!1.39e-10!31;DOID:0050687!9.60e-10!143;DOID:305!6.17e-09!106 | |ontology_enrichment_disease=DOID:162!1.09e-19!235;DOID:14566!8.31e-19!239;DOID:0050686!5.84e-15!137;DOID:1240!5.40e-11!39;DOID:2531!7.56e-11!51;DOID:0060083!7.56e-11!51;DOID:8692!1.39e-10!31;DOID:0050687!9.60e-10!143;DOID:305!6.17e-09!106 | ||
|ontology_enrichment_disease_v019=DOID:8692;2.86e-10;31!DOID:1240;1.17e-08;39!DOID:2531;3.04e-07;51!DOID:0060083;3.04e-07;51 | |ontology_enrichment_disease_v019=DOID:8692;2.86e-10;31!DOID:1240;1.17e-08;39!DOID:2531;3.04e-07;51!DOID:0060083;3.04e-07;51 | ||
|ontology_enrichment_disease_v019_2=DOID:162,1.27e-19,235;DOID:14566,9.67e-19,239;DOID:0050686,7.06e-15,137;DOID:1240,5.15e-11,39;DOID:2531,7.21e-11,51;DOID:0060083,7.21e-11,51;DOID:8692,1.33e-10,31;DOID:0050687,1.06e-09,143;DOID:305,5.76e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0000481!6.22e-11!347;UBERON:0000119!2.27e-10!312;UBERON:0000483!6.64e-10!309;UBERON:0000064!4.07e-09!219;UBERON:0000063!8.16e-09!97;UBERON:0004211!1.40e-08!16;UBERON:0001285!1.40e-08!16;UBERON:0007684!1.40e-08!16;UBERON:0003220!1.40e-08!16;UBERON:0004208!1.40e-08!16;UBERON:0003104!3.03e-08!238;UBERON:0009142!3.03e-08!238;UBERON:0002113!8.57e-08!27;UBERON:0003918!8.57e-08!27;UBERON:0005095!8.57e-08!27;UBERON:0007687!8.57e-08!27;UBERON:0006555!1.08e-07!17;UBERON:0005103!1.08e-07!17;UBERON:0000083!1.08e-07!17;UBERON:0009201!1.08e-07!17;UBERON:0004819!1.08e-07!17;UBERON:0006553!1.08e-07!17;UBERON:0003074!1.08e-07!17;UBERON:0003060!1.08e-07!17;UBERON:0000072!3.05e-07!46;UBERON:0001225!5.03e-07!13;UBERON:0008987!5.03e-07!13;UBERON:0005177!5.11e-07!107;UBERON:0009773!6.62e-07!12;UBERON:0001231!6.62e-07!12;UBERON:0004810!6.62e-07!12;UBERON:0008947!9.41e-07!38;UBERON:0003258!9.41e-07!38 | |ontology_enrichment_uberon=UBERON:0000481!6.22e-11!347;UBERON:0000119!2.27e-10!312;UBERON:0000483!6.64e-10!309;UBERON:0000064!4.07e-09!219;UBERON:0000063!8.16e-09!97;UBERON:0004211!1.40e-08!16;UBERON:0001285!1.40e-08!16;UBERON:0007684!1.40e-08!16;UBERON:0003220!1.40e-08!16;UBERON:0004208!1.40e-08!16;UBERON:0003104!3.03e-08!238;UBERON:0009142!3.03e-08!238;UBERON:0002113!8.57e-08!27;UBERON:0003918!8.57e-08!27;UBERON:0005095!8.57e-08!27;UBERON:0007687!8.57e-08!27;UBERON:0006555!1.08e-07!17;UBERON:0005103!1.08e-07!17;UBERON:0000083!1.08e-07!17;UBERON:0009201!1.08e-07!17;UBERON:0004819!1.08e-07!17;UBERON:0006553!1.08e-07!17;UBERON:0003074!1.08e-07!17;UBERON:0003060!1.08e-07!17;UBERON:0000072!3.05e-07!46;UBERON:0001225!5.03e-07!13;UBERON:0008987!5.03e-07!13;UBERON:0005177!5.11e-07!107;UBERON:0009773!6.62e-07!12;UBERON:0001231!6.62e-07!12;UBERON:0004810!6.62e-07!12;UBERON:0008947!9.41e-07!38;UBERON:0003258!9.41e-07!38 | ||
|ontology_enrichment_uberon_v019=UBERON:0006554;2.88e-10;30!UBERON:0001008;2.88e-10;30!UBERON:0002113;1.66e-09;24!UBERON:0011143;1.66e-09;24!UBERON:0006555;7.56e-09;15!UBERON:0004819;7.56e-09;15!UBERON:0001285;7.56e-09;15!UBERON:0007684;7.56e-09;15!UBERON:0000489;9.88e-08;29!UBERON:0000072;2.14e-07;37!UBERON:0001225;2.94e-07;12!UBERON:0008987;2.94e-07;12!UBERON:0005911;3.55e-07;36!UBERON:0004211;4.17e-07;10!UBERON:0009773;4.17e-07;10!UBERON:0001231;4.17e-07;10!UBERON:0004810;4.17e-07;10!UBERON:0000353;4.66e-07;15 | |ontology_enrichment_uberon_v019=UBERON:0006554;2.88e-10;30!UBERON:0001008;2.88e-10;30!UBERON:0002113;1.66e-09;24!UBERON:0011143;1.66e-09;24!UBERON:0006555;7.56e-09;15!UBERON:0004819;7.56e-09;15!UBERON:0001285;7.56e-09;15!UBERON:0007684;7.56e-09;15!UBERON:0000489;9.88e-08;29!UBERON:0000072;2.14e-07;37!UBERON:0001225;2.94e-07;12!UBERON:0008987;2.94e-07;12!UBERON:0005911;3.55e-07;36!UBERON:0004211;4.17e-07;10!UBERON:0009773;4.17e-07;10!UBERON:0001231;4.17e-07;10!UBERON:0004810;4.17e-07;10!UBERON:0000353;4.66e-07;15 | ||
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| ||
|short_description=p2@PAFAH1B3 | |short_description=p2@PAFAH1B3 | ||
}} | }} |
Latest revision as of 08:54, 18 September 2015
Short description: | p2@PAFAH1B3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PAFAH1B3_5end |
Coexpression cluster: | C1824_Alveolar_nonsmall_brain_duodenum_Neurons_Renal_temporal |
Association with transcript: | 138bp_to_ENST00000262890, NM_002573, uc002otg.2_5end |
EntrezGene: | PAFAH1B3 |
HGNC: | 8576 |
UniProt: | Q15102 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.55e-26 | 253 |
embryonic cell | 1.97e-18 | 250 |
epithelial cell of nephron | 8.79e-09 | 15 |
ectodermal cell | 1.07e-08 | 72 |
kidney cell | 1.86e-08 | 17 |
kidney epithelial cell | 1.86e-08 | 17 |
neural cell | 3.57e-08 | 25 |
kidney cortical cell | 3.24e-07 | 12 |
renal cortical epithelial cell | 3.24e-07 | 12 |
kidney tubule cell | 4.20e-07 | 10 |
nephron tubule epithelial cell | 4.20e-07 | 10 |
neurectodermal cell | 4.72e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
cell layer | 6.34e-11 | 309 |
epithelium | 1.92e-10 | 306 |
nephron epithelium | 8.79e-09 | 15 |
renal tubule | 8.79e-09 | 15 |
nephron tubule | 8.79e-09 | 15 |
nephron | 8.79e-09 | 15 |
uriniferous tubule | 8.79e-09 | 15 |
nephrogenic mesenchyme | 8.79e-09 | 15 |
excretory tube | 7.77e-08 | 16 |
kidney epithelium | 7.77e-08 | 16 |
kidney | 9.05e-08 | 26 |
kidney mesenchyme | 9.05e-08 | 26 |
upper urinary tract | 9.05e-08 | 26 |
kidney rudiment | 9.05e-08 | 26 |
kidney field | 9.05e-08 | 26 |
segment of respiratory tract | 2.82e-07 | 47 |
cortex of kidney | 3.24e-07 | 12 |
renal parenchyma | 3.24e-07 | 12 |
trunk region element | 3.92e-07 | 101 |
nephron tubule epithelium | 4.20e-07 | 10 |
parenchyma | 5.25e-07 | 15 |
respiratory primordium | 9.16e-07 | 38 |
endoderm of foregut | 9.16e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.27e-19 | 235 |
disease of cellular proliferation | 9.67e-19 | 239 |
organ system cancer | 7.06e-15 | 137 |
leukemia | 5.15e-11 | 39 |
hematologic cancer | 7.21e-11 | 51 |
immune system cancer | 7.21e-11 | 51 |
myeloid leukemia | 1.33e-10 | 31 |
cell type cancer | 1.06e-09 | 143 |
carcinoma | 5.76e-09 | 106 |