FFCP PHASE1:Hg19::chr17:35299495..35299512,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:35299495..35299512,+ | |||
|coexpression_cluster_id=C11 | |coexpression_cluster_id=C11 | ||
|description=CAGE_peak_at_chr17:35299495..35299512,+ | |description=CAGE_peak_at_chr17:35299495..35299512,+ | ||
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|ontology_enrichment_celltype=CL:1000507!9.35e-22!12;CL:1000494!9.35e-22!12;CL:1000449!3.13e-20!16;CL:1000497!8.55e-18!18;CL:0002518!8.55e-18!18;CL:0002681!2.46e-15!13;CL:0002584!2.46e-15!13;CL:0000239!7.90e-07!3;CL:1000615!7.90e-07!3;CL:0002306!7.90e-07!3 | |ontology_enrichment_celltype=CL:1000507!9.35e-22!12;CL:1000494!9.35e-22!12;CL:1000449!3.13e-20!16;CL:1000497!8.55e-18!18;CL:0002518!8.55e-18!18;CL:0002681!2.46e-15!13;CL:0002584!2.46e-15!13;CL:0000239!7.90e-07!3;CL:1000615!7.90e-07!3;CL:0002306!7.90e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000054;2.99e-10;2!CL:0000137;2.99e-10;2!CL:0000092;2.99e-10;2!CL:1000507;4.34e-08;10!CL:1000494;4.34e-08;10!CL:0000239;2.97e-07;3!CL:1000615;2.97e-07;3!CL:0002306;2.97e-07;3 | |ontology_enrichment_celltype_v019=CL:0000054;2.99e-10;2!CL:0000137;2.99e-10;2!CL:0000092;2.99e-10;2!CL:1000507;4.34e-08;10!CL:1000494;4.34e-08;10!CL:0000239;2.97e-07;3!CL:1000615;2.97e-07;3!CL:0002306;2.97e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000054,2.72e-10,2;CL:0000137,2.72e-10,2;CL:0000092,2.72e-10,2;CL:1000507,4.19e-08,10;CL:1000494,4.19e-08,10;CL:0000239,2.63e-07,3;CL:1000615,2.63e-07,3;CL:0002306,2.63e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006215;3.80e-55;3!UBERON:0005754;2.06e-19;1!UBERON:0007297;2.17e-10;2 | |ontology_enrichment_development_v019=UBERON:0006215;3.80e-55;3!UBERON:0005754;2.06e-19;1!UBERON:0007297;2.17e-10;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060085;3.91e-19;1!DOID:3165;3.91e-19;1!DOID:0060121;3.91e-19;1!DOID:2438;3.91e-19;1!DOID:4418;3.91e-19;1!DOID:200;2.99e-10;2!DOID:4305;2.99e-10;2 | |ontology_enrichment_disease_v019=DOID:0060085;3.91e-19;1!DOID:3165;3.91e-19;1!DOID:0060121;3.91e-19;1!DOID:2438;3.91e-19;1!DOID:4418;3.91e-19;1!DOID:200;2.99e-10;2!DOID:4305;2.99e-10;2 | ||
|ontology_enrichment_disease_v019_2=DOID:0060085,3.25e-19,1;DOID:3165,3.25e-19,1;DOID:0060121,3.25e-19,1;DOID:2438,3.25e-19,1;DOID:4418,3.25e-19,1;DOID:200,2.72e-10,2;DOID:4305,2.72e-10,2 | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0002037,5.40e-28,6;UBERON:0006215,5.40e-28,6;UBERON:0000998,1.88e-19,1;UBERON:0006868,1.88e-19,1;UBERON:0002680,6.40e-19,9;UBERON:0001895,6.40e-19,9;UBERON:0010092,6.40e-19,9;UBERON:0004733,2.30e-14,12;UBERON:0002028,2.30e-14,12;UBERON:0007277,2.30e-14,12;UBERON:0004732,2.60e-13,13;UBERON:0003076,1.27e-11,15;UBERON:0003057,1.27e-11,15;UBERON:0004810,4.19e-08,10;UBERON:0006947,2.32e-07,3;UBERON:0004054,2.32e-07,3;UBERON:0006853,2.63e-07,3;UBERON:0007685,2.63e-07,3;UBERON:0004134,2.63e-07,3;UBERON:0002113,7.88e-07,26;UBERON:0003918,7.88e-07,26;UBERON:0011143,7.88e-07,26;UBERON:0005095,7.88e-07,26;UBERON:0007687,7.88e-07,26 | |||
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|short_description=p@chr17:35299495..35299512,+ | |short_description=p@chr17:35299495..35299512,+ | ||
}} | }} |
Latest revision as of 15:48, 25 July 2015
Short description: | p@chr17:35299495..35299512, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:35299495..35299512, + |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone matrix secreting cell | 2.72e-10 | 2 |
osteocyte | 2.72e-10 | 2 |
osteoclast | 2.72e-10 | 2 |
kidney tubule cell | 4.19e-08 | 10 |
nephron tubule epithelial cell | 4.19e-08 | 10 |
brush border epithelial cell | 2.63e-07 | 3 |
kidney cortex tubule cell | 2.63e-07 | 3 |
epithelial cell of proximal tubule | 2.63e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 5.40e-28 | 6 |
rhombic lip | 5.40e-28 | 6 |
seminal vesicle | 1.88e-19 | 1 |
seminal fluid secreting gland | 1.88e-19 | 1 |
regional part of metencephalon | 6.40e-19 | 9 |
metencephalon | 6.40e-19 | 9 |
future metencephalon | 6.40e-19 | 9 |
segmental subdivision of hindbrain | 2.30e-14 | 12 |
hindbrain | 2.30e-14 | 12 |
presumptive hindbrain | 2.30e-14 | 12 |
segmental subdivision of nervous system | 2.60e-13 | 13 |
posterior neural tube | 1.27e-11 | 15 |
chordal neural plate | 1.27e-11 | 15 |
nephron tubule epithelium | 4.19e-08 | 10 |
male genital duct | 2.32e-07 | 3 |
internal male genitalia | 2.32e-07 | 3 |
renal cortex tubule | 2.63e-07 | 3 |
region of nephron tubule | 2.63e-07 | 3 |
proximal tubule | 2.63e-07 | 3 |
kidney | 7.88e-07 | 26 |
kidney mesenchyme | 7.88e-07 | 26 |
upper urinary tract | 7.88e-07 | 26 |
kidney rudiment | 7.88e-07 | 26 |
kidney field | 7.88e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 3.25e-19 | 1 |
skin benign neoplasm | 3.25e-19 | 1 |
integumentary system benign neoplasm | 3.25e-19 | 1 |
dermis tumor | 3.25e-19 | 1 |
cutaneous fibrous histiocytoma | 3.25e-19 | 1 |
giant cell tumor | 2.72e-10 | 2 |
bone giant cell tumor | 2.72e-10 | 2 |