FFCP PHASE1:Hg19::chr3:169587717..169587728,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79782 | |EntrezGene=79782 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26261 | |HGNC=26261 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000264676_5end | |association_with_transcript=0bp_to_ENST00000264676_5end | ||
|cluster_id=chr3:169587717..169587728,- | |||
|coexpression_cluster_id=C76 | |coexpression_cluster_id=C76 | ||
|description=CAGE_peak_1_at_LRRC31_5end | |description=CAGE_peak_1_at_LRRC31_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002535;1.43e-10;2!CL:0002178;3.06e-07;3 | |ontology_enrichment_celltype_v019=CL:0002535;1.43e-10;2!CL:0002178;3.06e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002535,1.43e-10,2;CL:0002178,3.35e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008425;4.28e-19;1 | |ontology_enrichment_development_v019=UBERON:0008425;4.28e-19;1 | ||
|ontology_enrichment_disease=DOID:2355!4.60e-07!1 | |ontology_enrichment_disease=DOID:2355!4.60e-07!1 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!4.43e-15!35;UBERON:0000160!1.07e-12!27;UBERON:0001155!3.99e-11!9;UBERON:0004921!4.42e-11!129;UBERON:0004185!4.42e-11!129;UBERON:0001007!8.70e-10!155;UBERON:0001555!8.70e-10!155;UBERON:0007026!8.70e-10!155;UBERON:0000059!4.06e-09!11;UBERON:0004119!1.17e-08!169;UBERON:0000925!1.17e-08!169;UBERON:0006595!1.17e-08!169;UBERON:0000989!2.09e-07!1;UBERON:0008811!2.09e-07!1;UBERON:0006258!2.09e-07!1;UBERON:0005876!2.09e-07!1;UBERON:0004874!2.09e-07!1;UBERON:0002372!2.67e-07!1;UBERON:0001961!2.67e-07!1;UBERON:0001744!2.67e-07!1;UBERON:0001735!2.67e-07!1;UBERON:0001154!3.21e-07!1;UBERON:0001153!3.21e-07!1 | |ontology_enrichment_uberon=UBERON:0005409!4.43e-15!35;UBERON:0000160!1.07e-12!27;UBERON:0001155!3.99e-11!9;UBERON:0004921!4.42e-11!129;UBERON:0004185!4.42e-11!129;UBERON:0001007!8.70e-10!155;UBERON:0001555!8.70e-10!155;UBERON:0007026!8.70e-10!155;UBERON:0000059!4.06e-09!11;UBERON:0004119!1.17e-08!169;UBERON:0000925!1.17e-08!169;UBERON:0006595!1.17e-08!169;UBERON:0000989!2.09e-07!1;UBERON:0008811!2.09e-07!1;UBERON:0006258!2.09e-07!1;UBERON:0005876!2.09e-07!1;UBERON:0004874!2.09e-07!1;UBERON:0002372!2.67e-07!1;UBERON:0001961!2.67e-07!1;UBERON:0001744!2.67e-07!1;UBERON:0001735!2.67e-07!1;UBERON:0001154!3.21e-07!1;UBERON:0001153!3.21e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;6.54e-28;22!UBERON:0004921;2.44e-17;33!UBERON:0000160;2.07e-16;17!UBERON:0002108;2.70e-15;4!UBERON:0000945;3.35e-15;5!UBERON:0010039;3.35e-15;5!UBERON:0006955;1.43e-10;2!UBERON:0004801;1.43e-10;2!UBERON:0001155;4.43e-09;9!UBERON:0000059;1.37e-07;11!UBERON:0001555;3.57e-07;54 | |ontology_enrichment_uberon_v019=UBERON:0005409;6.54e-28;22!UBERON:0004921;2.44e-17;33!UBERON:0000160;2.07e-16;17!UBERON:0002108;2.70e-15;4!UBERON:0000945;3.35e-15;5!UBERON:0010039;3.35e-15;5!UBERON:0006955;1.43e-10;2!UBERON:0004801;1.43e-10;2!UBERON:0001155;4.43e-09;9!UBERON:0000059;1.37e-07;11!UBERON:0001555;3.57e-07;54 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,1.12e-24,25;UBERON:0000160,1.99e-16,17;UBERON:0002108,2.51e-15,4;UBERON:0006955,1.43e-10,2;UBERON:0004801,1.43e-10,2;UBERON:0000945,7.94e-10,8;UBERON:0010039,7.94e-10,8;UBERON:0001155,4.43e-09,9;UBERON:0000059,1.37e-07,11;UBERON:0004921,4.62e-07,118 | |||
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|short_description=p1@LRRC31 | |short_description=p1@LRRC31 | ||
}} | }} |
Latest revision as of 15:06, 16 September 2015
Short description: | p1@LRRC31 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRRC31_5end |
Coexpression cluster: | C76_argyrophil_gastrointestinal_temporal_duodenum_neuroblastoma_merkel_smallcell |
Association with transcript: | 0bp_to_ENST00000264676_5end |
EntrezGene: | LRRC31 |
HGNC: | 26261 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 1.43e-10 | 2 |
epithelial cell of stomach | 3.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 1.12e-24 | 25 |
intestine | 1.99e-16 | 17 |
small intestine | 2.51e-15 | 4 |
uterine epithelium | 1.43e-10 | 2 |
cervix epithelium | 1.43e-10 | 2 |
stomach | 7.94e-10 | 8 |
food storage organ | 7.94e-10 | 8 |
colon | 4.43e-09 | 9 |
large intestine | 1.37e-07 | 11 |
subdivision of digestive tract | 4.62e-07 | 118 |