FFCP PHASE1:Hg19::chr6:24777040..24777071,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51053 | |EntrezGene=51053 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17493 | |HGNC=17493 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-22bp_to_ENST00000378059_5end | |association_with_transcript=-22bp_to_ENST00000378059_5end | ||
|cluster_id=chr6:24777040..24777071,+ | |||
|coexpression_cluster_id=C643 | |coexpression_cluster_id=C643 | ||
|description=CAGE_peak_3_at_GMNN_5end | |description=CAGE_peak_3_at_GMNN_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000946;4.44e-11;1!CL:0000786;4.44e-11;1 | |ontology_enrichment_celltype_v019=CL:0000946;4.44e-11;1!CL:0000786;4.44e-11;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000946,4.91e-11,1;CL:0000786,4.91e-11,1;CL:0000980,4.91e-11,1 | |||
|ontology_enrichment_development_v019=UBERON:0009497;1.77e-07;13 | |ontology_enrichment_development_v019=UBERON:0009497;1.77e-07;13 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3371;1.87e-11;1!DOID:4549;1.87e-11;1!DOID:5861;1.87e-11;1!DOID:6496;1.87e-11;1 | |ontology_enrichment_disease_v019=DOID:3371;1.87e-11;1!DOID:4549;1.87e-11;1!DOID:5861;1.87e-11;1!DOID:6496;1.87e-11;1 | ||
|ontology_enrichment_disease_v019_2=DOID:3371,1.97e-11,1;DOID:4549,1.97e-11,1;DOID:5861,1.97e-11,1;DOID:6496,1.97e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0004921!1.58e-15!129;UBERON:0004185!1.58e-15!129;UBERON:0000160!1.70e-14!27;UBERON:0005409!2.17e-14!35;UBERON:0001007!1.98e-12!155;UBERON:0001555!1.98e-12!155;UBERON:0007026!1.98e-12!155;UBERON:0000059!3.06e-12!11;UBERON:0004119!1.10e-10!169;UBERON:0000925!1.10e-10!169;UBERON:0006595!1.10e-10!169;UBERON:0004907!2.45e-09!5;UBERON:0000077!5.05e-09!130;UBERON:0001046!3.10e-08!19;UBERON:0001155!3.90e-08!9;UBERON:0000481!2.52e-07!347;UBERON:0001052!6.51e-07!4 | |ontology_enrichment_uberon=UBERON:0004921!1.58e-15!129;UBERON:0004185!1.58e-15!129;UBERON:0000160!1.70e-14!27;UBERON:0005409!2.17e-14!35;UBERON:0001007!1.98e-12!155;UBERON:0001555!1.98e-12!155;UBERON:0007026!1.98e-12!155;UBERON:0000059!3.06e-12!11;UBERON:0004119!1.10e-10!169;UBERON:0000925!1.10e-10!169;UBERON:0006595!1.10e-10!169;UBERON:0004907!2.45e-09!5;UBERON:0000077!5.05e-09!130;UBERON:0001046!3.10e-08!19;UBERON:0001155!3.90e-08!9;UBERON:0000481!2.52e-07!347;UBERON:0001052!6.51e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;8.68e-21;22!UBERON:0000160;1.00e-19;17!UBERON:0000059;8.44e-15;11!UBERON:0004921;6.39e-13;33!UBERON:0001155;1.08e-10;9 | |ontology_enrichment_uberon_v019=UBERON:0005409;8.68e-21;22!UBERON:0000160;1.00e-19;17!UBERON:0000059;8.44e-15;11!UBERON:0004921;6.39e-13;33!UBERON:0001155;1.08e-10;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,8.52e-20,17;UBERON:0005409,2.25e-18,25;UBERON:0000059,7.19e-15,11;UBERON:0001155,1.03e-10,9;UBERON:0004921,2.80e-10,118;UBERON:0001007,4.95e-08,145;UBERON:0001555,4.95e-08,145;UBERON:0007026,4.95e-08,145;UBERON:0004119,4.15e-07,160;UBERON:0000925,4.15e-07,160;UBERON:0006595,4.15e-07,160 | |||
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| ||
|short_description=p3@GMNN | |short_description=p3@GMNN | ||
}} | }} |
Latest revision as of 06:50, 17 September 2015
Short description: | p3@GMNN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GMNN_5end |
Coexpression cluster: | C643_duodenum_temporal_pancreas_stomach_mesothelioma_small_amygdala |
Association with transcript: | -22bp_to_ENST00000378059_5end |
EntrezGene: | GMNN |
HGNC: | 17493 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
antibody secreting cell | 4.91e-11 | 1 |
plasma cell | 4.91e-11 | 1 |
plasmablast | 4.91e-11 | 1 |
Ontology term | p-value | n |
---|---|---|
intestine | 8.52e-20 | 17 |
gastrointestinal system | 2.25e-18 | 25 |
large intestine | 7.19e-15 | 11 |
colon | 1.03e-10 | 9 |
subdivision of digestive tract | 2.80e-10 | 118 |
digestive system | 4.95e-08 | 145 |
digestive tract | 4.95e-08 | 145 |
primitive gut | 4.95e-08 | 145 |
endoderm-derived structure | 4.15e-07 | 160 |
endoderm | 4.15e-07 | 160 |
presumptive endoderm | 4.15e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.97e-11 | 1 |
extraosseous chondrosarcoma | 1.97e-11 | 1 |
myxoid chondrosarcoma | 1.97e-11 | 1 |
extraskeletal myxoid chondrosarcoma | 1.97e-11 | 1 |