FFCP PHASE1:Hg19::chr1:27320224..27320235,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:27320224..27320235,+
|short_description=p3@TRNP1
|description=CAGE_peak_3_at_TRNP1_5end
|association_with_transcript=26bp_to_ENST00000522111_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=388610 | |EntrezGene=388610 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=34348 | |HGNC=34348 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=26bp_to_ENST00000522111_5end | |||
|cluster_id=chr1:27320224..27320235,+ | |||
|coexpression_cluster_id=C3963 | |||
|description=CAGE_peak_3_at_TRNP1_5end | |||
|id=chr1:27320224..27320235,+ | |||
|ontology_enrichment_celltype=CL:0000055!6.74e-20!180;CL:0002321!4.55e-16!248;CL:0000222!7.96e-16!119;CL:0000220!8.75e-16!246;CL:0000057!1.29e-13!75;CL:0000183!4.43e-12!59;CL:0000680!6.46e-11!57;CL:0000056!6.46e-11!57;CL:0000355!6.46e-11!57;CL:0000187!2.92e-10!54;CL:0000066!3.78e-09!254;CL:1000449!5.61e-09!16;CL:0000393!9.24e-09!60;CL:0000211!9.24e-09!60;CL:1000497!2.88e-08!18;CL:0002518!2.88e-08!18;CL:0000192!2.93e-08!42;CL:0000514!2.93e-08!42;CL:0000548!6.10e-08!679;CL:0000004!6.10e-08!679;CL:0000255!6.10e-08!679;CL:1000507!1.04e-07!12;CL:1000494!1.04e-07!12;CL:0002681!1.39e-07!13;CL:0002584!1.39e-07!13;CL:0002620!1.51e-07!23;CL:0000144!1.73e-07!625;CL:0000012!2.01e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:1000449;2.28e-10;15!CL:1000497;6.86e-10;17!CL:0002518;6.86e-10;17!CL:0002681;1.62e-08;12!CL:0002584;1.62e-08;12!CL:1000507;2.16e-08;10!CL:1000494;2.16e-08;10!CL:0002620;2.18e-08;23!CL:0000057;3.33e-07;73!CL:0002551;6.23e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.72e-12,76;CL:0000222,4.92e-12,121;CL:1000449,7.01e-11,15;CL:1000497,2.05e-10,17;CL:0002518,2.05e-10,17;CL:0002321,2.52e-10,250;CL:1000507,4.39e-09,10;CL:1000494,4.39e-09,10;CL:0002681,9.07e-09,12;CL:0002584,9.07e-09,12;CL:0002620,1.67e-08,23;CL:0000680,3.90e-07,58;CL:0000056,3.90e-07,58;CL:0000355,3.90e-07,58;CL:0002551,4.11e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!5.35e-21!312;UBERON:0000483!4.42e-20!309;UBERON:0000475!6.33e-20!365;UBERON:0005256!2.51e-17!143;UBERON:0000914!6.10e-14!83;UBERON:0002329!6.10e-14!83;UBERON:0003077!6.10e-14!83;UBERON:0003059!6.10e-14!83;UBERON:0007282!6.10e-14!83;UBERON:0009618!6.10e-14!83;UBERON:0007285!6.10e-14!83;UBERON:0004290!7.90e-13!70;UBERON:0000481!3.84e-12!347;UBERON:0000486!6.36e-12!82;UBERON:0003102!1.56e-11!95;UBERON:0002100!4.23e-11!216;UBERON:0000468!7.39e-10!659;UBERON:0001134!1.31e-09!61;UBERON:0002036!1.31e-09!61;UBERON:0003082!1.31e-09!61;UBERON:0003914!2.27e-09!118;UBERON:0000467!3.79e-09!625;UBERON:0004111!4.87e-09!241;UBERON:0004211!5.61e-09!16;UBERON:0001285!5.61e-09!16;UBERON:0007684!5.61e-09!16;UBERON:0003220!5.61e-09!16;UBERON:0004208!5.61e-09!16;UBERON:0000480!5.75e-09!626;UBERON:0002199!6.33e-09!45;UBERON:0002416!6.33e-09!45;UBERON:0000477!7.77e-09!286;UBERON:0002385!1.11e-08!63;UBERON:0001015!1.11e-08!63;UBERON:0000383!1.11e-08!63;UBERON:0003104!1.39e-08!238;UBERON:0009142!1.39e-08!238;UBERON:0000490!2.14e-08!138;UBERON:0002097!3.19e-08!40;UBERON:0002049!4.44e-08!79;UBERON:0007798!4.44e-08!79;UBERON:0006555!6.16e-08!17;UBERON:0005103!6.16e-08!17;UBERON:0000083!6.16e-08!17;UBERON:0009201!6.16e-08!17;UBERON:0004819!6.16e-08!17;UBERON:0006553!6.16e-08!17;UBERON:0003074!6.16e-08!17;UBERON:0003060!6.16e-08!17;UBERON:0009773!1.04e-07!12;UBERON:0001231!1.04e-07!12;UBERON:0004810!1.04e-07!12;UBERON:0001225!1.39e-07!13;UBERON:0008987!1.39e-07!13;UBERON:0000025!2.72e-07!194;UBERON:0001851!4.51e-07!16;UBERON:0000080!4.93e-07!18;UBERON:0002120!4.93e-07!18;UBERON:0004875!4.93e-07!18;UBERON:0005721!4.93e-07!18;UBERON:0005754!4.93e-07!18;UBERON:0007297!4.93e-07!18;UBERON:0003064!8.59e-07!37;UBERON:0000064!9.66e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;2.28e-10;15!UBERON:0004819;2.28e-10;15!UBERON:0001285;2.28e-10;15!UBERON:0007684;2.28e-10;15!UBERON:0001225;1.62e-08;12!UBERON:0008987;1.62e-08;12!UBERON:0004211;2.16e-08;10!UBERON:0009773;2.16e-08;10!UBERON:0001231;2.16e-08;10!UBERON:0004810;2.16e-08;10!UBERON:0002097;8.22e-08;41!UBERON:0003102;1.22e-07;50!UBERON:0000353;1.47e-07;15!UBERON:0002067;1.69e-07;9!UBERON:0001851;2.75e-07;15 | |||
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|short_description=p3@TRNP1 | |||
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Latest revision as of 07:08, 17 September 2015
Short description: | p3@TRNP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TRNP1_5end |
Coexpression cluster: | C3963_Mesenchymal_Smooth_Fibroblast_Alveolar_Keratocytes_Hair_Renal |
Association with transcript: | 26bp_to_ENST00000522111_5end |
EntrezGene: | TRNP1 |
HGNC: | 34348 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.72e-12 | 76 |
mesodermal cell | 4.92e-12 | 121 |
epithelial cell of nephron | 7.01e-11 | 15 |
kidney cell | 2.05e-10 | 17 |
kidney epithelial cell | 2.05e-10 | 17 |
embryonic cell | 2.52e-10 | 250 |
kidney tubule cell | 4.39e-09 | 10 |
nephron tubule epithelial cell | 4.39e-09 | 10 |
kidney cortical cell | 9.07e-09 | 12 |
renal cortical epithelial cell | 9.07e-09 | 12 |
skin fibroblast | 1.67e-08 | 23 |
muscle precursor cell | 3.90e-07 | 58 |
myoblast | 3.90e-07 | 58 |
multi-potent skeletal muscle stem cell | 3.90e-07 | 58 |
fibroblast of dermis | 4.11e-07 | 6 |