FFCP PHASE1:Hg19::chr4:135548764..135548775,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:135548764..135548775,+ | |||
|coexpression_cluster_id=C4370 | |coexpression_cluster_id=C4370 | ||
|description=CAGE_peak_at_chr4:135548764..135548775,+ | |description=CAGE_peak_at_chr4:135548764..135548775,+ | ||
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|ontology_enrichment_celltype=CL:0000039!6.88e-08!7;CL:0000586!6.88e-08!7;CL:0000313!2.22e-07!1 | |ontology_enrichment_celltype=CL:0000039!6.88e-08!7;CL:0000586!6.88e-08!7;CL:0000313!2.22e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000313;2.42e-50;1!CL:0000159;5.56e-26;2!CL:0002188;3.42e-11;5!CL:0002149;1.50e-09;6!CL:0002255;1.50e-09;6!CL:0000039;1.89e-08;7!CL:0000586;1.89e-08;7!CL:1000746;2.26e-08;7!CL:1000612;2.26e-08;7 | |ontology_enrichment_celltype_v019=CL:0000313;2.42e-50;1!CL:0000159;5.56e-26;2!CL:0002188;3.42e-11;5!CL:0002149;1.50e-09;6!CL:0002255;1.50e-09;6!CL:0000039;1.89e-08;7!CL:0000586;1.89e-08;7!CL:1000746;2.26e-08;7!CL:1000612;2.26e-08;7 | ||
|ontology_enrichment_celltype_v019_2=CL:0000313,2.42e-50,1;CL:0000159,5.56e-26,2;CL:0002188,3.60e-11,5;CL:0002149,1.44e-09,6;CL:0002255,1.44e-09,6;CL:0000039,1.89e-08,7;CL:0000586,1.89e-08,7;CL:1000746,2.35e-08,7;CL:1000612,2.35e-08,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.99e-21;10!UBERON:0005564;6.99e-21;10 | |ontology_enrichment_development_v019=UBERON:0009117;6.99e-21;10!UBERON:0005564;6.99e-21;10 | ||
|ontology_enrichment_disease=DOID:2152!2.22e-07!1 | |ontology_enrichment_disease=DOID:2152!2.22e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:2152;2.42e-50;1!DOID:3001;1.50e-09;6!DOID:299;5.60e-09;25!DOID:120;2.18e-08;27!DOID:193;7.03e-08;29 | |ontology_enrichment_disease_v019=DOID:2152;2.42e-50;1!DOID:3001;1.50e-09;6!DOID:299;5.60e-09;25!DOID:120;2.18e-08;27!DOID:193;7.03e-08;29 | ||
|ontology_enrichment_disease_v019_2=DOID:2152,2.42e-50,1;DOID:3001,1.44e-09,6;DOID:299,5.49e-09,25;DOID:120,2.14e-08,27;DOID:193,6.91e-08,29 | |||
|ontology_enrichment_uberon=UBERON:0003133!2.55e-17!48;UBERON:0004176!2.80e-15!22;UBERON:0005156!1.35e-13!59;UBERON:0000990!1.35e-13!59;UBERON:0003135!5.06e-13!11;UBERON:0000991!1.90e-12!21;UBERON:0009196!1.90e-12!21;UBERON:0009117!1.90e-12!21;UBERON:0005564!1.90e-12!21;UBERON:0000473!8.30e-12!8;UBERON:0002113!1.97e-09!27;UBERON:0003918!1.97e-09!27;UBERON:0005095!1.97e-09!27;UBERON:0007687!1.97e-09!27;UBERON:0003886!8.25e-09!63;UBERON:0006947!9.80e-09!3;UBERON:0004054!9.80e-09!3;UBERON:0003134!1.50e-08!37;UBERON:0000474!1.50e-08!37;UBERON:0005172!2.27e-08!55;UBERON:0005173!2.27e-08!55;UBERON:0000489!8.09e-08!32;UBERON:0004175!9.39e-08!25;UBERON:0002553!1.00e-07!70;UBERON:0003100!1.34e-07!41;UBERON:0004911!2.22e-07!1;UBERON:0002417!2.24e-07!61;UBERON:0000916!2.24e-07!61;UBERON:0000998!3.36e-07!1;UBERON:0006868!3.36e-07!1;UBERON:0001301!3.78e-07!1;UBERON:0005904!9.53e-07!4 | |ontology_enrichment_uberon=UBERON:0003133!2.55e-17!48;UBERON:0004176!2.80e-15!22;UBERON:0005156!1.35e-13!59;UBERON:0000990!1.35e-13!59;UBERON:0003135!5.06e-13!11;UBERON:0000991!1.90e-12!21;UBERON:0009196!1.90e-12!21;UBERON:0009117!1.90e-12!21;UBERON:0005564!1.90e-12!21;UBERON:0000473!8.30e-12!8;UBERON:0002113!1.97e-09!27;UBERON:0003918!1.97e-09!27;UBERON:0005095!1.97e-09!27;UBERON:0007687!1.97e-09!27;UBERON:0003886!8.25e-09!63;UBERON:0006947!9.80e-09!3;UBERON:0004054!9.80e-09!3;UBERON:0003134!1.50e-08!37;UBERON:0000474!1.50e-08!37;UBERON:0005172!2.27e-08!55;UBERON:0005173!2.27e-08!55;UBERON:0000489!8.09e-08!32;UBERON:0004175!9.39e-08!25;UBERON:0002553!1.00e-07!70;UBERON:0003100!1.34e-07!41;UBERON:0004911!2.22e-07!1;UBERON:0002417!2.24e-07!61;UBERON:0000916!2.24e-07!61;UBERON:0000998!3.36e-07!1;UBERON:0006868!3.36e-07!1;UBERON:0001301!3.78e-07!1;UBERON:0005904!9.53e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0004911;2.42e-50;1!UBERON:0004909;5.56e-26;2!UBERON:0003133;4.96e-12;44!UBERON:0000991;1.53e-10;21!UBERON:0000074;2.26e-08;7!UBERON:0001229;2.26e-08;7!UBERON:0000473;1.49e-07;8 | |ontology_enrichment_uberon_v019=UBERON:0004911;2.42e-50;1!UBERON:0004909;5.56e-26;2!UBERON:0003133;4.96e-12;44!UBERON:0000991;1.53e-10;21!UBERON:0000074;2.26e-08;7!UBERON:0001229;2.26e-08;7!UBERON:0000473;1.49e-07;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,2.42e-50,1;UBERON:0004909,5.56e-26,2;UBERON:0000991,1.53e-10,21;UBERON:0009196,1.53e-10,21;UBERON:0009117,1.53e-10,21;UBERON:0005564,1.53e-10,21;UBERON:0003133,3.32e-10,48;UBERON:0004176,4.14e-10,22;UBERON:0003886,3.71e-09,54;UBERON:0005156,1.83e-08,59;UBERON:0000990,1.83e-08,59;UBERON:0010532,2.35e-08,7;UBERON:0000074,2.35e-08,7;UBERON:0001229,2.35e-08,7;UBERON:0001230,2.35e-08,7;UBERON:0003220,2.35e-08,7;UBERON:0005749,2.35e-08,7;UBERON:0004199,2.35e-08,7;UBERON:0004209,2.35e-08,7;UBERON:0004198,2.35e-08,7;UBERON:0002553,3.34e-08,61;UBERON:0000473,1.49e-07,8;UBERON:0005103,1.80e-07,8;UBERON:0000083,1.80e-07,8;UBERON:0009201,1.80e-07,8;UBERON:0006553,1.80e-07,8;UBERON:0003074,1.80e-07,8;UBERON:0003060,1.80e-07,8;UBERON:0000080,8.85e-07,9;UBERON:0002120,8.85e-07,9;UBERON:0004875,8.85e-07,9;UBERON:0005721,8.85e-07,9;UBERON:0005754,8.85e-07,9;UBERON:0007297,8.85e-07,9 | |||
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|short_description=p@chr4:135548764..135548775,+ | |short_description=p@chr4:135548764..135548775,+ | ||
}} | }} |
Latest revision as of 01:38, 30 July 2015
Short description: | p@chr4:135548764..135548775, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:135548764..135548775, + |
Coexpression cluster: | C4370_testicular_serous_chorionic_retinoblastoma_endometrial_gall_pancreatic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
serous secreting cell | 2.42e-50 | 1 |
seromucus secreting cell | 5.56e-26 | 2 |
glomerular endothelial cell | 3.60e-11 | 5 |
epithelial cell of uterus | 1.44e-09 | 6 |
stromal cell of endometrium | 1.44e-09 | 6 |
germ line cell | 1.89e-08 | 7 |
germ cell | 1.89e-08 | 7 |
glomerular cell | 2.35e-08 | 7 |
kidney corpuscule cell | 2.35e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
epithelium of female gonad | 2.42e-50 | 1 |
epithelium of gonad | 5.56e-26 | 2 |
gonad | 1.53e-10 | 21 |
indifferent external genitalia | 1.53e-10 | 21 |
indifferent gonad | 1.53e-10 | 21 |
gonad primordium | 1.53e-10 | 21 |
reproductive organ | 3.32e-10 | 48 |
external genitalia | 4.14e-10 | 22 |
body cavity precursor | 3.71e-09 | 54 |
reproductive structure | 1.83e-08 | 59 |
reproductive system | 1.83e-08 | 59 |
primitive nephron | 2.35e-08 | 7 |
renal glomerulus | 2.35e-08 | 7 |
renal corpuscle | 2.35e-08 | 7 |
glomerular capsule | 2.35e-08 | 7 |
metanephric mesenchyme | 2.35e-08 | 7 |
glomerular tuft | 2.35e-08 | 7 |
S-shaped body | 2.35e-08 | 7 |
renal vesicle | 2.35e-08 | 7 |
comma-shaped body | 2.35e-08 | 7 |
anatomical cavity | 3.34e-08 | 61 |
testis | 1.49e-07 | 8 |
mesonephric epithelium | 1.80e-07 | 8 |
mesonephric tubule | 1.80e-07 | 8 |
nephric duct | 1.80e-07 | 8 |
renal duct | 1.80e-07 | 8 |
mesonephric duct | 1.80e-07 | 8 |
pronephric duct | 1.80e-07 | 8 |
mesonephros | 8.85e-07 | 9 |
pronephros | 8.85e-07 | 9 |
nephrogenic cord | 8.85e-07 | 9 |
pronephric mesoderm | 8.85e-07 | 9 |
rostral part of nephrogenic cord | 8.85e-07 | 9 |
presumptive pronephric mesoderm | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 2.42e-50 | 1 |
female reproductive endometrioid cancer | 1.44e-09 | 6 |
adenocarcinoma | 5.49e-09 | 25 |
female reproductive organ cancer | 2.14e-08 | 27 |
reproductive organ cancer | 6.91e-08 | 29 |