FFCP PHASE1:Hg19::chr22:30605270..30605275,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr22:30605270..30605275,+ | |||
|coexpression_cluster_id=C122 | |coexpression_cluster_id=C122 | ||
|description=CAGE_peak_at_chr22:30605270..30605275,+ | |description=CAGE_peak_at_chr22:30605270..30605275,+ | ||
|id=chr22:30605270..30605275,+ | |id=chr22:30605270..30605275,+ | ||
|ontology_enrichment_celltype=CL:0002188;3.65e-13;5!CL:1000746;1.13e-09;7!CL:1000612;1.13e-09;7!CL:0002253;5.93e-09;2 | |ontology_enrichment_celltype= | ||
| | |ontology_enrichment_celltype_v019=CL:0002188;3.65e-13;5!CL:1000746;1.13e-09;7!CL:1000612;1.13e-09;7!CL:0002253;5.93e-09;2 | ||
|ontology_enrichment_disease=DOID:3111;1.41e-16;1!DOID:3603;1.41e-16;1!DOID:4074;5.93e-09;2!DOID:4905;5.93e-09;2!DOID:3498;5.93e-09;2!DOID:1036;1.08e-08;8 | |ontology_enrichment_celltype_v019_2=CL:0002188,4.39e-13,5;CL:1000746,1.29e-09,7;CL:1000612,1.29e-09,7;CL:0002253,4.02e-09,2 | ||
|ontology_enrichment_uberon=UBERON:0000941;1.41e-16;1!UBERON:0001785;1.41e-16;1!UBERON:0002464;1.41e-16;1!UBERON:0004904;1.41e-16;1!UBERON:0001021;1.41e-16;1!UBERON:0000074;1.13e-09;7!UBERON:0001229;1.13e-09;7!UBERON:0003714;5.93e-09;2!UBERON:0005162;5.93e-09;2!UBERON:0000122;5.93e-09;2 | |ontology_enrichment_development_v019=UBERON:0005425;1.41e-16;1 | ||
|ontology_enrichment_disease=DOID:162!2.25e-10!235;DOID:14566!2.63e-10!239;DOID:0050687!7.28e-10!143;DOID:305!2.39e-08!106;DOID:299!7.86e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:3111;1.41e-16;1!DOID:3603;1.41e-16;1!DOID:4074;5.93e-09;2!DOID:4905;5.93e-09;2!DOID:3498;5.93e-09;2!DOID:1036;1.08e-08;8 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,8.86e-17,1;DOID:3603,8.86e-17,1;DOID:4074,4.34e-09,2;DOID:4905,4.34e-09,2;DOID:3498,4.34e-09,2;DOID:1036,1.17e-08,8 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.41e-16;1!UBERON:0001785;1.41e-16;1!UBERON:0002464;1.41e-16;1!UBERON:0004904;1.41e-16;1!UBERON:0001021;1.41e-16;1!UBERON:0000074;1.13e-09;7!UBERON:0001229;1.13e-09;7!UBERON:0003714;5.93e-09;2!UBERON:0005162;5.93e-09;2!UBERON:0000122;5.93e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.04e-16,1;UBERON:0001785,1.04e-16,1;UBERON:0002464,1.04e-16,1;UBERON:0004904,1.04e-16,1;UBERON:0001021,1.04e-16,1;UBERON:0003902,1.04e-16,1;UBERON:0005425,1.04e-16,1;UBERON:0010532,1.29e-09,7;UBERON:0000074,1.29e-09,7;UBERON:0001229,1.29e-09,7;UBERON:0001230,1.29e-09,7;UBERON:0003220,1.29e-09,7;UBERON:0005749,1.29e-09,7;UBERON:0004199,1.29e-09,7;UBERON:0004209,1.29e-09,7;UBERON:0004198,1.29e-09,7;UBERON:0003714,5.08e-09,2;UBERON:0005162,5.08e-09,2;UBERON:0000122,5.08e-09,2;UBERON:0005103,1.59e-08,8;UBERON:0000083,1.59e-08,8;UBERON:0009201,1.59e-08,8;UBERON:0006553,1.59e-08,8;UBERON:0003074,1.59e-08,8;UBERON:0003060,1.59e-08,8;UBERON:0000080,1.13e-07,9;UBERON:0002120,1.13e-07,9;UBERON:0004875,1.13e-07,9;UBERON:0005721,1.13e-07,9;UBERON:0005754,1.13e-07,9;UBERON:0007297,1.13e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0,0,0.404132016209064,0.326923806226917,0.151357427644931,0,0,0,0,0.149448680551801,0.469737994575059,0.161872944368132,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0.30648779579902,0,0.113432183160021,0.358779271377724,0,0,0.600182192168805,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0.462985512576611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576479813667846,0.12624243342638,0,0,0,0,0,0,0,0,0,0.1466765716419,0,0,0,0,0,0.257207374262142,0,0.266422179016099,0,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0.542530047399471,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0,0,0,0,0,0,0,0.223874754722178,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0.107420244868274,0.145016693914229,0.170453254832202,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0.318203247925937,0.78494864019923,0,0,0.235624804691373,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0.281695602532241,0.573645408816206,0,0,0.709522128141196,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0.449341755736634,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0.503464760927528,10.246701567106,0.794682894901893,0.210998064528027,0.489698424477443,1.97894300007517,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0.19566461893209,1.94224303627274,0,0,0,0.063186579628488,0.450970258243478,0,0,0.330991955875499,0,0,0,0,0,0,0.261177619741208,0,0,0,0,0,0,0.176512253383001,0,0.137041924646751,0.19871461170299,0,0,0.160317640503067,0,0.39961921916426,0.432271251462318,0,0,0.288109595976299,0,0,0.815425236441684,1.04602846312333,0.203996435272644,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0.211200673038813,0.179287339332845,0,0,0,0.25426853765475,0,0,0,0,1.23138781124008,0,0.226624183040251,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,1.37478448758317,0.151649117541648,0,0,0,0,0.149254802886874,0.233713309847224,0.554805861502613,0,0,0,0.228840068396924,0,0,0,0,0,0.310525913752519,0,0,0,0,0,0.406870733204662,0,0,0,0,1.20008329398946,0.343395705182793,0,0,0.192619830407303,0,0.260994291965212,0,0.231522474323834,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655219697692825,0,1.47918486351039,0,0,0,0.567515953566836,0.184105950251841,0,0,0,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0.366857197043358,0.693153996902029,0,0,0,0,0,0,0,0.655087670040387,0.443568258651136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0.354581522651905,0.111231401892069,0,0,0.280272163313789,0,0.215927591218621,0,0,0,0.23248285073625,0,0.801711364730253,0,0,0,0,0.118332000730565,0,0,0,0,0,0.111855431797792,0.196300467230486,0.365753774946808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0.705789743431384,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0.252332849670158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33639558774184,0,0,0,0,0,0,0,0.407016343054873,0,0,0.0898252021065869,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0,0,0.404132016209064,0.326923806226917,0.151357427644931,0,0,0,0,0.149448680551801,0.469737994575059,0.161872944368132,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0.30648779579902,0,0.113432183160021,0.358779271377724,0,0,0.600182192168805,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0.462985512576611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576479813667846,0.12624243342638,0,0,0,0,0,0,0,0,0,0.1466765716419,0,0,0,0,0,0.257207374262142,0,0.266422179016099,0,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0.542530047399471,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0,0,0,0,0,0,0,0.223874754722178,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0.107420244868274,0.145016693914229,0.170453254832202,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0.318203247925937,0.78494864019923,0,0,0.235624804691373,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0.281695602532241,0.573645408816206,0,0,0.709522128141196,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0.449341755736634,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0.503464760927528,10.246701567106,0.794682894901893,0.210998064528027,0.489698424477443,1.97894300007517,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0.19566461893209,1.94224303627274,0,0,0,0.063186579628488,0.450970258243478,0,0,0.330991955875499,0,0,0,0,0,0,0.261177619741208,0,0,0,0,0,0,0.176512253383001,0,0.137041924646751,0.19871461170299,0,0,0.160317640503067,0,0.39961921916426,0.432271251462318,0,0,0.288109595976299,0,0,0.815425236441684,1.04602846312333,0.203996435272644,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0.211200673038813,0.179287339332845,0,0,0,0.25426853765475,0,0,0,0,1.23138781124008,0,0.226624183040251,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,1.37478448758317,0.151649117541648,0,0,0,0,0.149254802886874,0.233713309847224,0.554805861502613,0,0,0,0.228840068396924,0,0,0,0,0,0.310525913752519,0,0,0,0,0,0.406870733204662,0,0,0,0,1.20008329398946,0.343395705182793,0,0,0.192619830407303,0,0.260994291965212,0,0.231522474323834,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655219697692825,0,1.47918486351039,0,0,0,0.567515953566836,0.184105950251841,0,0,0,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0.366857197043358,0.693153996902029,0,0,0,0,0,0,0,0.655087670040387,0.443568258651136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0.354581522651905,0.111231401892069,0,0,0.280272163313789,0,0.215927591218621,0,0,0,0.23248285073625,0,0.801711364730253,0,0,0,0,0.118332000730565,0,0,0,0,0,0.111855431797792,0.196300467230486,0.365753774946808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0.705789743431384,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0.252332849670158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33639558774184,0,0,0,0,0,0,0,0.407016343054873,0,0,0.0898252021065869,0,0,0,0,0,0 | ||
|short_description=p@chr22:30605270..30605275,+ | |short_description=p@chr22:30605270..30605275,+ | ||
}} | }} |
Latest revision as of 20:03, 28 July 2015
Short description: | p@chr22:30605270..30605275, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr22:30605270..30605275, + |
Coexpression cluster: | C122_chronic_Reticulocytes_skeletal_leukemia_acute_colon_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glomerular endothelial cell | 4.39e-13 | 5 |
glomerular cell | 1.29e-09 | 7 |
kidney corpuscule cell | 1.29e-09 | 7 |
epithelial cell of large intestine | 4.02e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 1.04e-16 | 1 |
cranial nerve | 1.04e-16 | 1 |
nerve trunk | 1.04e-16 | 1 |
nerve connecting eye with brain | 1.04e-16 | 1 |
nerve | 1.04e-16 | 1 |
retinal neural layer | 1.04e-16 | 1 |
presumptive neural retina | 1.04e-16 | 1 |
primitive nephron | 1.29e-09 | 7 |
renal glomerulus | 1.29e-09 | 7 |
renal corpuscle | 1.29e-09 | 7 |
glomerular capsule | 1.29e-09 | 7 |
metanephric mesenchyme | 1.29e-09 | 7 |
glomerular tuft | 1.29e-09 | 7 |
S-shaped body | 1.29e-09 | 7 |
renal vesicle | 1.29e-09 | 7 |
comma-shaped body | 1.29e-09 | 7 |
neural tissue | 5.08e-09 | 2 |
multi cell component structure | 5.08e-09 | 2 |
neuron projection bundle | 5.08e-09 | 2 |
mesonephric epithelium | 1.59e-08 | 8 |
mesonephric tubule | 1.59e-08 | 8 |
nephric duct | 1.59e-08 | 8 |
renal duct | 1.59e-08 | 8 |
mesonephric duct | 1.59e-08 | 8 |
pronephric duct | 1.59e-08 | 8 |
mesonephros | 1.13e-07 | 9 |
pronephros | 1.13e-07 | 9 |
nephrogenic cord | 1.13e-07 | 9 |
pronephric mesoderm | 1.13e-07 | 9 |
rostral part of nephrogenic cord | 1.13e-07 | 9 |
presumptive pronephric mesoderm | 1.13e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 8.86e-17 | 1 |
mucinous cystadenocarcinoma | 8.86e-17 | 1 |
pancreas adenocarcinoma | 4.34e-09 | 2 |
pancreatic carcinoma | 4.34e-09 | 2 |
pancreatic ductal adenocarcinoma | 4.34e-09 | 2 |
chronic leukemia | 1.17e-08 | 8 |