FFCP PHASE1:Hg19::chr19:55477738..55477774,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:55477738..55477774,+
|short_description=p1@NLRP2
|description=CAGE_peak_1_at_NLRP2_5end
|association_with_transcript=0bp_to_ENST00000263437,ENST0000042726...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55655 | |EntrezGene=55655 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22948 | |HGNC=22948 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NX02,Q8WX94 | |UniProt=Q9NX02,Q8WX94 | ||
|association_with_transcript=0bp_to_ENST00000263437,ENST00000427260,ENST00000538819,uc002qij.2,uc010esn.2,uc010eso.2,uc010esp.2,uc010yfp.1_5end | |||
|cluster_id=chr19:55477738..55477774,+ | |||
|description=CAGE_peak_1_at_NLRP2_5end | |||
|id=chr19:55477738..55477774,+ | |||
|ontology_enrichment_celltype=CL:0000039!6.07e-07!7;CL:0000586!6.07e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:1000507;5.19e-14;10!CL:1000494;5.19e-14;10!CL:0000039;7.21e-13;7!CL:0000586;7.21e-13;7!CL:1000449;1.19e-08;15!CL:1000497;2.12e-07;17!CL:0002518;2.12e-07;17!CL:0002681;4.51e-07;12!CL:0002584;4.51e-07;12!CL:0000239;6.84e-07;3!CL:1000615;6.84e-07;3!CL:0002306;6.84e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,3.88e-14,10;CL:1000494,3.88e-14,10;CL:0000039,6.40e-13,7;CL:0000586,6.40e-13,7;CL:0000066,9.44e-10,253;CL:1000449,9.95e-09,15;CL:1000497,1.81e-07,17;CL:0002518,1.81e-07,17;CL:0002681,3.90e-07,12;CL:0002584,3.90e-07,12;CL:0000239,6.83e-07,3;CL:1000615,6.83e-07,3;CL:0002306,6.83e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!1.04e-08!61;UBERON:0003075!1.79e-07!86;UBERON:0007284!1.79e-07!86;UBERON:0002346!3.49e-07!90;UBERON:0001869!4.64e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;5.19e-14;10!UBERON:0009773;5.19e-14;10!UBERON:0001231;5.19e-14;10!UBERON:0004810;5.19e-14;10!UBERON:0006555;1.19e-08;15!UBERON:0004819;1.19e-08;15!UBERON:0001285;1.19e-08;15!UBERON:0007684;1.19e-08;15!UBERON:0000473;4.31e-08;8!UBERON:0001225;4.51e-07;12!UBERON:0008987;4.51e-07;12!UBERON:0001851;4.59e-07;15!UBERON:0002113;5.06e-07;24!UBERON:0011143;5.06e-07;24!UBERON:0006853;6.84e-07;3!UBERON:0007685;6.84e-07;3!UBERON:0004134;6.84e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,3.88e-14,10;UBERON:0004211,9.95e-09,15;UBERON:0009773,9.95e-09,15;UBERON:0001231,9.95e-09,15;UBERON:0001285,9.95e-09,15;UBERON:0007684,9.95e-09,15;UBERON:0004208,9.95e-09,15;UBERON:0006555,4.66e-08,16;UBERON:0004819,4.66e-08,16;UBERON:0000473,5.02e-08,8;UBERON:0001851,3.83e-07,15;UBERON:0001225,3.90e-07,12;UBERON:0008987,3.90e-07,12;UBERON:0006853,6.83e-07,3;UBERON:0007685,6.83e-07,3;UBERON:0004134,6.83e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,0,2.40285509343189,1.58260186937072,0,0,0,0,0,0,0.123121058076788,0,0,1.43117993565528,0.684372125364421,0.627713197974014,0,0,0,0,0.383829398097213,0.619264493264304,0,0.30120591877825,0,0.232401601740905,0,0.293600439334847,0,0,0.434021741431704,0.671746422719773,0,0.257575567634187,0.145398238779565,0,0,0.232429036905685,0,0,0,1.0246428261164,0,0.344745680736619,0,0,0.188242339542605,0,0.224723484445085,0.306083892370903,0,0,0.329851300186716,0.398927315243264,0,0.290209238628584,0.56738522469114,0,0.251248665256743,0,0,0.605399502633369,0,0,0,0,0.209658645508376,0,0,0.16072558669708,0,0.19891667719909,0,3.51992488922645,0.546138611262131,0,1.28019066769952,0.800791974072025,0.574752439954483,0.661044872784862,0,0,0.587237189370939,0,0,0,2.37045676297569,0.393419540227666,0.393010762749165,0,0,0,0,0,0,0,0,1.08321545506006,0.25618263945135,1.43065282315866,0.164437904603676,0.552700035571697,0,0,0.535081656179426,0,0,0,0,0,0,1.30216690771284,0,0.451725357233318,0.76791966692651,1.24930726552346,0.236777252044017,0.821127996921047,0.201606743224732,0.267440195783507,0.579297615531196,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0.945348171640679,3.54767035940102,3.95256535619067,0.851363990735132,0.364295288292542,0.741568885568859,0.649094787309367,1.39303789839414,1.99436940778298,0.238490624305342,1.71598473234038,2.60020250930695,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0.488124115096339,0,0,2.32179293538607,1.79623498100936,0.112611480483322,0,0,2.19842092716489,0,0,0,0,0,0,0,0,0,0,1.2333377420858,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,1.90922284413584,2.29443676311203,0.853815942907168,1.45782745153634,1.04574548582567,0.207322110030741,1.7662459561294,12.774207567654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0.982827216677626,0,0,6.02643348861256,1.20097467208968,1.09750285408626,1.1240175325762,0.603173834469785,0.370353780634118,0.325808305310325,0,0,0.811512834825538,0.70445216541493,1.44366447761074,0,0,0,0,1.96973604869918,2.57404691653161,0.445893486866185,6.56136837907439,1.17587489739202,0,1.97028749946266,0,5.36735750831296,0,0,0,0.144119953416961,0,0,0.381988425558278,0,1.71072446022705,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,3.48613383440118,1.79951384127703,0,0,0,0,0,0,0,0,0,0,0,0,0.513372145118994,0.76228387266739,1.30139853857622,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0.315404830067869,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,4.23346410661552,0,0,0.280660094433074,0,0,0,0,0,0,0,0,0,5.92211302998949,0,1.01289087829486,0,0,0,2.70719767744447,3.08061348417659,0,2.92278449306521,1.26661954671451,0,0.680374821106063,0,0,2.98041081298238,2.50844886927427,8.15604073744123,5.81753206250107,2.46262230194396,0.438519753291869,0,1.79515087581472,0.984043937099117,0.976135183992909,0,0,0,0,0,0,0,0.308097234229289,0.614014698904518,0,0.107420244868274,0.290033387828457,0.255679882248303,0,2.64455864577565,0,0.382838137483752,0,0,0,0,0,0,0,0,0,0.372158369359667,0.316379424718726,0,0,0,0,0,0,0,0.353437207037059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0.196498082026242,0,0,0,0,0,0,0,2.68120910214315,0,0.0941438007767792,2.15252686335615,0,0.886860307073351,0.689170200620878,0.507447609232169,0,0,0.238231775457789,1.23408681925858,0,0.540031437238115,0,0,0,3.92064345569651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0.121360521749513,0,0.568272293612826,0.47748896947538,0.296964680832639,0,1.9882952955326,0.140669416410513,0.779160935160341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,6.38246740773428,0,0,2.08349993919951,0,0.60298219312704,3.05163472634166,0,0,0,0,0.557694977114413,0.538651809526579,0.341826167541004,1.38338342632836,6.73182333073291,3.47671590150426,0.31900115973192,0.732780747214898,2.66517388009317,0,0,0.166211681900156,4.51191321234361,4.11731322067253,4.19553967439607,2.27704479269022,0,0.421996129056054,2.12202650606892,5.08871057162187,0,0,0.707660516026713,0,0,0,0,0.134802265961354,0,0,0,0.978323094660449,0,0,1.20990716048664,0.61214552326098,0.31593289814244,0,0,0,0,0,0,0,0.277349346026277,0,3.13575671726008,0.435296032902013,0.698906672968121,0,0,0,0,1.74580229679155,0,0.225980740780532,0,1.39100228192093,0.189932387867636,0,0.0801588202515337,0.85381197895741,0,0.72045208577053,0,0,0,0,0,0,0,0,0,0,0.136905378891993,1.27746588066972,0.859530882839914,3.41753560563109,0.279282401272254,0,0,0.199679000498991,0,0,0,0,5.82479747637269,0,0,0,0,0,0.795229689809303,0.272406812223151,0,9.49022112520913,9.55512777467126,0.2249738915515,0,0.364497339948148,0,1.26089131678717,0.891727998294968,0,0,0,0,0,2.28841683889275,0,0.864221491201268,0,1.19730191562487,0,0,0,0,0,0.129282956361551,0.39669780522807,0.684347351537318,3.52407511158336,0.427149650270779,0.157204305099666,0,0.496166021811951,0,1.09613338542806,2.55336503108073,0,0,0,0,1.72759505875258,0.8860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| 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| ||
|short_description=p1@NLRP2 | |||
}} | }} |
Latest revision as of 23:25, 19 September 2015
Short description: | p1@NLRP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NLRP2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000263437, ENST00000427260, ENST00000538819, uc002qij.2, uc010esn.2, uc010eso.2, uc010esp.2, uc010yfp.1_5end |
EntrezGene: | NLRP2 |
HGNC: | 22948 |
UniProt: | Q9NX02Q8WX94 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 3.88e-14 | 10 |
nephron tubule epithelial cell | 3.88e-14 | 10 |
germ line cell | 6.40e-13 | 7 |
germ cell | 6.40e-13 | 7 |
epithelial cell | 9.44e-10 | 253 |
epithelial cell of nephron | 9.95e-09 | 15 |
kidney cell | 1.81e-07 | 17 |
kidney epithelial cell | 1.81e-07 | 17 |
kidney cortical cell | 3.90e-07 | 12 |
renal cortical epithelial cell | 3.90e-07 | 12 |
brush border epithelial cell | 6.83e-07 | 3 |
kidney cortex tubule cell | 6.83e-07 | 3 |
epithelial cell of proximal tubule | 6.83e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 3.88e-14 | 10 |
nephron epithelium | 9.95e-09 | 15 |
renal tubule | 9.95e-09 | 15 |
nephron tubule | 9.95e-09 | 15 |
nephron | 9.95e-09 | 15 |
uriniferous tubule | 9.95e-09 | 15 |
nephrogenic mesenchyme | 9.95e-09 | 15 |
excretory tube | 4.66e-08 | 16 |
kidney epithelium | 4.66e-08 | 16 |
testis | 5.02e-08 | 8 |
cortex | 3.83e-07 | 15 |
cortex of kidney | 3.90e-07 | 12 |
renal parenchyma | 3.90e-07 | 12 |
renal cortex tubule | 6.83e-07 | 3 |
region of nephron tubule | 6.83e-07 | 3 |
proximal tubule | 6.83e-07 | 3 |