FFCP PHASE1:Hg19::chr19:50708757..50708769,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:50708757..50708769,+
|short_description=p@chr19:50708757..50708769,+
|description=CAGE_peak_at_chr19:50708757..50708769,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:50708757..50708769,+ | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_at_chr19:50708757..50708769,+ | |||
|id=chr19:50708757..50708769,+ | |||
|ontology_enrichment_celltype=CL:0002231!3.18e-07!3;CL:0002076!7.11e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0002681;2.24e-12;12!CL:0002584;2.24e-12;12!CL:0000313;1.37e-10;1!CL:1000449;6.13e-10;15!CL:1000507;7.84e-09;10!CL:1000494;7.84e-09;10!CL:1000497;8.67e-09;17!CL:0002518;8.67e-09;17!CL:0002537;1.52e-08;5!CL:0002149;5.84e-07;6!CL:0002255;5.84e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002681,2.60e-12,12;CL:0002584,2.60e-12,12;CL:0000313,1.08e-10,1;CL:1000449,6.90e-10,15;CL:1000507,8.96e-09,10;CL:1000494,8.96e-09,10;CL:1000497,9.61e-09,17;CL:0002518,9.61e-09,17;CL:0002537,1.52e-08,5;CL:0002149,5.75e-07,6;CL:0002255,5.75e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2152;1.37e-10;1!DOID:299;5.63e-09;25!DOID:120;2.47e-08;27!DOID:4362;2.88e-08;5!DOID:193;9.56e-08;29!DOID:3001;5.84e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,1.08e-10,1;DOID:299,5.22e-09,25;DOID:120,2.27e-08,27;DOID:4362,2.63e-08,5;DOID:193,8.82e-08,29;DOID:3001,5.75e-07,6 | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0001225,2.60e-12,12;UBERON:0008987,2.60e-12,12;UBERON:0004911,1.08e-10,1;UBERON:0004913,1.43e-10,1;UBERON:0003703,1.43e-10,1;UBERON:0001174,1.43e-10,1;UBERON:0004914,1.43e-10,1;UBERON:0000997,1.57e-10,1;UBERON:0005056,1.57e-10,1;UBERON:0002171,3.61e-10,1;UBERON:0006518,3.61e-10,1;UBERON:0008949,3.61e-10,1;UBERON:0000101,3.61e-10,1;UBERON:0002167,3.61e-10,1;UBERON:0001052,4.15e-10,4;UBERON:0001851,6.90e-10,15;UBERON:0004211,6.90e-10,15;UBERON:0009773,6.90e-10,15;UBERON:0000353,6.90e-10,15;UBERON:0001231,6.90e-10,15;UBERON:0001285,6.90e-10,15;UBERON:0007684,6.90e-10,15;UBERON:0004208,6.90e-10,15;UBERON:0006555,2.79e-09,16;UBERON:0004819,2.79e-09,16;UBERON:0004810,8.96e-09,10;UBERON:0003134,1.74e-08,37;UBERON:0000474,1.74e-08,37;UBERON:0000160,2.42e-08,17;UBERON:0004907,2.94e-08,5;UBERON:0003100,1.30e-07,41;UBERON:0000995,3.67e-07,21;UBERON:0000002,4.66e-07,6;UBERON:0001560,4.66e-07,6;UBERON:0005795,7.67e-07,22;UBERON:0003975,7.67e-07,22 | |||
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| ||
|short_description=p@chr19:50708757..50708769,+ | |||
}} | }} |
Latest revision as of 16:20, 27 July 2015
Short description: | p@chr19:50708757..50708769, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:50708757..50708769, + |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cortical cell | 2.60e-12 | 12 |
renal cortical epithelial cell | 2.60e-12 | 12 |
serous secreting cell | 1.08e-10 | 1 |
epithelial cell of nephron | 6.90e-10 | 15 |
kidney tubule cell | 8.96e-09 | 10 |
nephron tubule epithelial cell | 8.96e-09 | 10 |
kidney cell | 9.61e-09 | 17 |
kidney epithelial cell | 9.61e-09 | 17 |
amnion mesenchymal stem cell | 1.52e-08 | 5 |
epithelial cell of uterus | 5.75e-07 | 6 |
stromal cell of endometrium | 5.75e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
cortex of kidney | 2.60e-12 | 12 |
renal parenchyma | 2.60e-12 | 12 |
epithelium of female gonad | 1.08e-10 | 1 |
hepatopancreatic ampulla | 1.43e-10 | 1 |
extrahepatic bile duct | 1.43e-10 | 1 |
common bile duct | 1.43e-10 | 1 |
duodenal papilla | 1.43e-10 | 1 |
mammalian vulva | 1.57e-10 | 1 |
external female genitalia | 1.57e-10 | 1 |
lower lobe of right lung | 3.61e-10 | 1 |
right lung lobe | 3.61e-10 | 1 |
lower lobe of lung | 3.61e-10 | 1 |
lobe of lung | 3.61e-10 | 1 |
right lung | 3.61e-10 | 1 |
rectum | 4.15e-10 | 4 |
cortex | 6.90e-10 | 15 |
nephron epithelium | 6.90e-10 | 15 |
renal tubule | 6.90e-10 | 15 |
parenchyma | 6.90e-10 | 15 |
nephron tubule | 6.90e-10 | 15 |
nephron | 6.90e-10 | 15 |
uriniferous tubule | 6.90e-10 | 15 |
nephrogenic mesenchyme | 6.90e-10 | 15 |
excretory tube | 2.79e-09 | 16 |
kidney epithelium | 2.79e-09 | 16 |
nephron tubule epithelium | 8.96e-09 | 10 |
female reproductive organ | 1.74e-08 | 37 |
female reproductive system | 1.74e-08 | 37 |
intestine | 2.42e-08 | 17 |
lower digestive tract | 2.94e-08 | 5 |
female organism | 1.30e-07 | 41 |
uterus | 3.67e-07 | 21 |
uterine cervix | 4.66e-07 | 6 |
neck of organ | 4.66e-07 | 6 |
embryonic uterus | 7.67e-07 | 22 |
internal female genitalia | 7.67e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 1.08e-10 | 1 |
adenocarcinoma | 5.22e-09 | 25 |
female reproductive organ cancer | 2.27e-08 | 27 |
cervical cancer | 2.63e-08 | 5 |
reproductive organ cancer | 8.82e-08 | 29 |
female reproductive endometrioid cancer | 5.75e-07 | 6 |