FFCP PHASE1:Hg19::chr3:194040598..194040638,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:194040598..194040638,- | |||
|coexpression_cluster_id=C4317 | |coexpression_cluster_id=C4317 | ||
|description=CAGE_peak_at_chr3:194040598..194040638,- | |description=CAGE_peak_at_chr3:194040598..194040638,- | ||
|id=chr3:194040598..194040638,- | |id=chr3:194040598..194040638,- | ||
|ontology_enrichment_celltype=CL:0000066!4.83e-40!254;CL:0002076!4.74e-15!43;CL:0000223!1.04e-13!59;CL:0000076!8.63e-10!62;CL:0002251!7.19e-09!21;CL:0000063!9.55e-07!578 | |ontology_enrichment_celltype=CL:0000066!4.83e-40!254;CL:0002076!4.74e-15!43;CL:0000223!1.04e-13!59;CL:0000076!8.63e-10!62;CL:0002251!7.19e-09!21;CL:0000063!9.55e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:0002251;3.74e-09;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.53e-29,253;CL:0002251,2.85e-09,20;CL:0002076,6.56e-09,42;CL:0000223,3.63e-07,58;CL:0000076,8.36e-07,63 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.32e-14;29!UBERON:0006595;1.32e-07;86 | |||
|ontology_enrichment_disease=DOID:305!2.70e-42!106;DOID:0050687!5.10e-31!143;DOID:162!3.92e-19!235;DOID:14566!4.22e-18!239;DOID:1749!1.03e-14!14;DOID:299!2.07e-11!25 | |ontology_enrichment_disease=DOID:305!2.70e-42!106;DOID:0050687!5.10e-31!143;DOID:162!3.92e-19!235;DOID:14566!4.22e-18!239;DOID:1749!1.03e-14!14;DOID:299!2.07e-11!25 | ||
|ontology_enrichment_disease_v019=DOID:1749;4.41e-20;14!DOID:299;2.60e-12;25!DOID:305;4.75e-12;106!DOID:0050687;8.54e-07;143 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.09e-51,106;DOID:0050687,5.03e-37,143;DOID:162,7.62e-22,235;DOID:14566,5.17e-21,239;DOID:1749,4.14e-20,14;DOID:299,2.24e-12,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.04e-24!169;UBERON:0000925!1.04e-24!169;UBERON:0006595!1.04e-24!169;UBERON:0000077!3.05e-22!130;UBERON:0001007!3.39e-21!155;UBERON:0001555!3.39e-21!155;UBERON:0007026!3.39e-21!155;UBERON:0001041!1.23e-18!98;UBERON:0004921!2.76e-18!129;UBERON:0004185!2.76e-18!129;UBERON:0001004!9.07e-15!72;UBERON:0000072!1.69e-13!46;UBERON:0000065!4.16e-13!53;UBERON:0008947!1.39e-12!38;UBERON:0003258!1.39e-12!38;UBERON:0001737!3.43e-11!9;UBERON:0001557!6.86e-10!19;UBERON:0005177!1.11e-09!107;UBERON:0000466!3.61e-09!126;UBERON:0005911!4.21e-09!82;UBERON:0000062!6.80e-09!511;UBERON:0000464!1.14e-08!104;UBERON:0002294!1.24e-08!7;UBERON:0001173!1.24e-08!7;UBERON:0004912!1.24e-08!7;UBERON:0003104!1.90e-08!238;UBERON:0009142!1.90e-08!238;UBERON:0000161!4.26e-08!35;UBERON:0001048!8.36e-08!168;UBERON:0002075!6.65e-07!18 | |ontology_enrichment_uberon=UBERON:0004119!1.04e-24!169;UBERON:0000925!1.04e-24!169;UBERON:0006595!1.04e-24!169;UBERON:0000077!3.05e-22!130;UBERON:0001007!3.39e-21!155;UBERON:0001555!3.39e-21!155;UBERON:0007026!3.39e-21!155;UBERON:0001041!1.23e-18!98;UBERON:0004921!2.76e-18!129;UBERON:0004185!2.76e-18!129;UBERON:0001004!9.07e-15!72;UBERON:0000072!1.69e-13!46;UBERON:0000065!4.16e-13!53;UBERON:0008947!1.39e-12!38;UBERON:0003258!1.39e-12!38;UBERON:0001737!3.43e-11!9;UBERON:0001557!6.86e-10!19;UBERON:0005177!1.11e-09!107;UBERON:0000466!3.61e-09!126;UBERON:0005911!4.21e-09!82;UBERON:0000062!6.80e-09!511;UBERON:0000464!1.14e-08!104;UBERON:0002294!1.24e-08!7;UBERON:0001173!1.24e-08!7;UBERON:0004912!1.24e-08!7;UBERON:0003104!1.90e-08!238;UBERON:0009142!1.90e-08!238;UBERON:0000161!4.26e-08!35;UBERON:0001048!8.36e-08!168;UBERON:0002075!6.65e-07!18 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.22e-18;9!UBERON:0001557;1.22e-18;9!UBERON:0002294;5.85e-11;7!UBERON:0001173;5.85e-11;7!UBERON:0000072;6.33e-10;37!UBERON:0002075;3.59e-09;18!UBERON:0000065;1.18e-07;44!UBERON:0001041;1.93e-07;14!UBERON:0002110;3.19e-07;3!UBERON:0001004;4.12e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.14e-18,9;UBERON:0004119,4.86e-17,160;UBERON:0000925,4.86e-17,160;UBERON:0006595,4.86e-17,160;UBERON:0001007,2.74e-14,145;UBERON:0001555,2.74e-14,145;UBERON:0007026,2.74e-14,145;UBERON:0001557,7.53e-14,19;UBERON:0001041,9.55e-14,87;UBERON:0004921,1.44e-13,118;UBERON:0000072,2.95e-12,47;UBERON:0008947,2.08e-11,38;UBERON:0003258,2.08e-11,38;UBERON:0000065,4.02e-11,54;UBERON:0001004,2.20e-10,74;UBERON:0002075,3.31e-09,18;UBERON:0002294,2.52e-08,9;UBERON:0001173,2.52e-08,9;UBERON:0004912,2.52e-08,9;UBERON:0002110,3.10e-07,3;UBERON:0006242,3.10e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,1.09220686065086,1.84636884759917,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0.344745680736619,0,0,0.188242339542605,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,1.45718115317017,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0.402829317109147,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,1.74437620857014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368502951935304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0.193260853163297,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,7.57163520255001,6.23763353288976,4.09718750801919,7.16910822760561,5.88274499049497,6.64357733511071,9.57302287937167,7.45641567476315,6.54070166808864,0,0,0,0,0,0,0,0,1.47586126251736,0,0.768251997860379,0,0.502644862058154,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0.985143749731331,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0.710783897485092,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,4.99306318531491,2.41912234663744,0,0.153461973288062,0,0,0,0,0,0,0,0.0821271560138091,0,0,0.241718899183244,0.200506470303285,1.84161977871793,0,0,0,0,0.616122696835318,0,0,0.949964660035881,0,0.170093705276516,0,0,1.08378575017541,0,0.254876273045038,0,0.671624264166535,0.438519753291869,0.261435451024901,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,1.91419068741876,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0.384888450902048,0.670302275535787,0,0,1.29151611801369,0,2.21715076768338,2.29723400206959,0,0,0,0,0,0,0,0,0,0,6.37104561550682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.11134053551235,0,0,0.334330152832435,0.568272293612826,1.90995587790152,0.296964680832639,5.83605333988541,0,0,1.11308705022906,0.494411622680279,0.211125408127993,0,0,0,0,0,0,4.85289096195565,23.2727527078292,0,0.690503839458535,0,0,0,0,0,0.260427761085233,0,0,4.66553137970549,11.4414142631745,0,0,0,0,0,0,0,0,0,0,0,11.1538995422883,2.30850775511391,0.91153644677601,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,2.3209787098083,7.1822435590025,0,0,0,0,0,0,0,0,0,0,0,0,6.45693242475896,0.485560759068186,0,0,0,0,0,0,2.65861549082874,3.30991955875499,4.08112793929393,1.19472429772959,0,0.277349346026277,0.347119476670262,15.4827987914717,8.09650621197744,0,11.1790921106551,7.93401916570498,4.89698424477443,9.03270027585302,10.183846731284,0,1.35588444468319,0,0,0,11.5375315813534,6.01191151886503,3.62870091056899,1.79828648623917,1.44090417154106,0,0,1.00838358591705,1.24252535565433,22.1552392539788,1.08723364858891,0.836822770498666,0,0,0,0,0,0,0,0,0,0.717873024576814,0.998395002494955,0,0,0.0671834724867263,0,0,0,0,0.202210631562555,0.590564889088493,0,0,0,0,0,0,1.799791132412,5.41661368190565,0,4.69608562638973,0,0.0524545881349981,0.105600336519406,1.6135860539956,3.64638874906946,0,0,9.91647296853524,0,0,0,0,0,0.170388021785422,0.226624183040251,0,0,0,0,7.01456035325751,3.52407511158336,0,0.157204305099666,0,0,0,0,11.4901426398633,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0.499921631848426,0,0,0.235265819698172,0,0.144921028610825,0.149254802886874,0,0,0,0,0,0.457680136793847,0.151230923763239,0.621748802331122,0.295710299979268,0.159296767163702,0,0,0.414706207840855,0,0,0,0.380805212168795,0,0.181848659202559,0.644463342254931,0,0,0,0,0,0,8.28265270751404,3.21662387062389,0,1.36023555307363,0,0.244736704506468,0,0.308801447160972,2.85069264452319,0.883445729729405,0.38582807654183,0.506827321959218,0,1.38172136692479,0,0,0,0,0,0,3.44082072255207,4.22624246717254,0,0,0,0,0,0.279759015438889,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.69256767305949,0.11796972334774,4.21885776599862,6.93153996902029,0,0,0,0,3.42898616795984,0,0,0.327543835020193,6.35781170733295,0,0,0,0,0,0,0,0,1.91643641459393,0.535701835878287,0,0,0,0.0887023701626388,0,0,0,0,2.2456829767954,6.1177271040638,0.156986185701028,0,1.68163297988273,0,19.6494108008945,31.0538597126583,0,0,0,0,0,0.207216164163037,2.56077715640925,3.45629830907046,0.430227358820278,0,0,0,8.01874039904175,0.31020638566432,1.91107787795487,0.335566295393377,3.14080747568778,3.29178397452127,0,0,0,0.485710993059139,0,0,0,0,0.109940516745429,0,0,0,0.470317296361523,0,0,0,0,0,0,0,0,0,5.8922799739867,26.1142205069612,3.12941330087756,2.19100916473955,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,5.33084954752452,0.23806443146374,0,0.372448285775147,0.672791175483681,0,0,3.9189014621453,0.684466602170562,3.03084238565644,1.2909996970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| ||
|short_description=p@chr3:194040598..194040638,- | |short_description=p@chr3:194040598..194040638,- | ||
}} | }} |
Latest revision as of 19:36, 29 July 2015
Short description: | p@chr3:194040598..194040638, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:194040598..194040638, - |
Coexpression cluster: | C4317_renal_squamous_bile_glassy_epidermoid_epithelioid_malignant |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.53e-29 | 253 |
epithelial cell of alimentary canal | 2.85e-09 | 20 |
endo-epithelial cell | 6.56e-09 | 42 |
endodermal cell | 3.63e-07 | 58 |
squamous epithelial cell | 8.36e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.14e-18 | 9 |
endoderm-derived structure | 4.86e-17 | 160 |
endoderm | 4.86e-17 | 160 |
presumptive endoderm | 4.86e-17 | 160 |
digestive system | 2.74e-14 | 145 |
digestive tract | 2.74e-14 | 145 |
primitive gut | 2.74e-14 | 145 |
upper respiratory tract | 7.53e-14 | 19 |
foregut | 9.55e-14 | 87 |
subdivision of digestive tract | 1.44e-13 | 118 |
segment of respiratory tract | 2.95e-12 | 47 |
respiratory primordium | 2.08e-11 | 38 |
endoderm of foregut | 2.08e-11 | 38 |
respiratory tract | 4.02e-11 | 54 |
respiratory system | 2.20e-10 | 74 |
viscus | 3.31e-09 | 18 |
biliary system | 2.52e-08 | 9 |
biliary tree | 2.52e-08 | 9 |
biliary bud | 2.52e-08 | 9 |
gallbladder | 3.10e-07 | 3 |
gall bladder primordium | 3.10e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.09e-51 | 106 |
cell type cancer | 5.03e-37 | 143 |
cancer | 7.62e-22 | 235 |
disease of cellular proliferation | 5.17e-21 | 239 |
squamous cell carcinoma | 4.14e-20 | 14 |
adenocarcinoma | 2.24e-12 | 25 |