FFCP PHASE1:Hg19::chr3:18466026..18466042,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6304 | |EntrezGene=6304 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10541 | |HGNC=10541 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=22bp_to_ENST00000417717_5end | |association_with_transcript=22bp_to_ENST00000417717_5end | ||
|cluster_id=chr3:18466026..18466042,- | |||
|coexpression_cluster_id=C28 | |coexpression_cluster_id=C28 | ||
|description=CAGE_peak_30_at_SATB1_5end | |description=CAGE_peak_30_at_SATB1_5end | ||
|id=chr3:18466026..18466042,- | |id=chr3:18466026..18466042,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001950!4.52e-11!20;UBERON:0002619!7.19e-10!22;UBERON:0001869!7.79e-10!32;UBERON:0001893!4.52e-09!34;UBERON:0001049!1.87e-08!57;UBERON:0005068!1.87e-08!57;UBERON:0006241!1.87e-08!57;UBERON:0007135!1.87e-08!57;UBERON:0000956!2.02e-08!25;UBERON:0000203!2.02e-08!25;UBERON:0001017!2.83e-08!82;UBERON:0002791!3.45e-08!33;UBERON:0002020!7.28e-08!34;UBERON:0003528!7.28e-08!34;UBERON:0005743!1.25e-07!86;UBERON:0000073!3.46e-07!94;UBERON:0001016!3.46e-07!94;UBERON:0002021!3.66e-07!5;UBERON:0002780!5.42e-07!41;UBERON:0001890!5.42e-07!41;UBERON:0006240!5.42e-07!41;UBERON:0000955!9.30e-07!69;UBERON:0006238!9.30e-07!69;UBERON:0003080!9.39e-07!42 | |ontology_enrichment_uberon=UBERON:0001950!4.52e-11!20;UBERON:0002619!7.19e-10!22;UBERON:0001869!7.79e-10!32;UBERON:0001893!4.52e-09!34;UBERON:0001049!1.87e-08!57;UBERON:0005068!1.87e-08!57;UBERON:0006241!1.87e-08!57;UBERON:0007135!1.87e-08!57;UBERON:0000956!2.02e-08!25;UBERON:0000203!2.02e-08!25;UBERON:0001017!2.83e-08!82;UBERON:0002791!3.45e-08!33;UBERON:0002020!7.28e-08!34;UBERON:0003528!7.28e-08!34;UBERON:0005743!1.25e-07!86;UBERON:0000073!3.46e-07!94;UBERON:0001016!3.46e-07!94;UBERON:0002021!3.66e-07!5;UBERON:0002780!5.42e-07!41;UBERON:0001890!5.42e-07!41;UBERON:0006240!5.42e-07!41;UBERON:0000955!9.30e-07!69;UBERON:0006238!9.30e-07!69;UBERON:0003080!9.39e-07!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.05e-79;2!UBERON:0005058;1.05e-79;2!UBERON:0009113;1.05e-79;2!UBERON:0004177;1.05e-32;5!UBERON:0005057;1.05e-32;5!UBERON:0002368;3.73e-10;33!UBERON:0002021;3.22e-09;5!UBERON:0000949;7.68e-08;43!UBERON:0002530;3.42e-07;57!UBERON:0000077;6.43e-07;27!UBERON:0002405;6.43e-07;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.48e-40,4;UBERON:0005058,1.48e-40,4;UBERON:0009113,1.48e-40,4;UBERON:0003295,1.48e-40,4;UBERON:0005562,1.48e-40,4;UBERON:0003351,1.82e-27,6;UBERON:0004177,1.02e-23,7;UBERON:0005057,1.02e-23,7;UBERON:0000974,5.90e-17,10;UBERON:0003408,5.90e-17,10;UBERON:0001042,5.90e-17,10;UBERON:0009145,5.90e-17,10;UBERON:0006562,1.62e-15,11;UBERON:0009722,1.62e-15,11;UBERON:0007690,1.62e-15,11;UBERON:0002368,4.95e-11,35;UBERON:0008814,6.79e-10,18;UBERON:0001557,1.99e-09,19;UBERON:0002021,2.97e-09,5;UBERON:0000949,9.36e-09,45;UBERON:0003929,2.03e-07,54;UBERON:0002530,7.53e-07,59 | |||
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| ||
|short_description=p30@SATB1 | |short_description=p30@SATB1 | ||
}} | }} |
Latest revision as of 03:03, 17 September 2015
Short description: | p30@SATB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_30_at_SATB1_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 22bp_to_ENST00000417717_5end |
EntrezGene: | SATB1 |
HGNC: | 10541 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 1.48e-40 | 4 |
hemolymphoid system gland | 1.48e-40 | 4 |
thymic region | 1.48e-40 | 4 |
pharyngeal gland | 1.48e-40 | 4 |
thymus primordium | 1.48e-40 | 4 |
pharyngeal epithelium | 1.82e-27 | 6 |
hemopoietic organ | 1.02e-23 | 7 |
immune organ | 1.02e-23 | 7 |
neck | 5.90e-17 | 10 |
gland of gut | 5.90e-17 | 10 |
chordate pharynx | 5.90e-17 | 10 |
pharyngeal region of foregut | 5.90e-17 | 10 |
pharynx | 1.62e-15 | 11 |
entire pharyngeal arch endoderm | 1.62e-15 | 11 |
early pharyngeal endoderm | 1.62e-15 | 11 |
endocrine gland | 4.95e-11 | 35 |
pharyngeal arch system | 6.79e-10 | 18 |
upper respiratory tract | 1.99e-09 | 19 |
occipital lobe | 2.97e-09 | 5 |
endocrine system | 9.36e-09 | 45 |
gut epithelium | 2.03e-07 | 54 |
gland | 7.53e-07 | 59 |