FFCP PHASE1:Hg19::chr2:166060586..166060603,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6328 | |EntrezGene=6328 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10590 | |HGNC=10590 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NY46,Q9C007 | |UniProt=Q9NY46,Q9C007 | ||
|association_with_transcript=-9bp_to_ENST00000360093,NM_001081676,NM_001081677,NM_006922,uc002ucx.2,uc002ucy.2,uc002ucz.2_5end | |association_with_transcript=-9bp_to_ENST00000360093,NM_001081676,NM_001081677,NM_006922,uc002ucx.2,uc002ucy.2,uc002ucz.2_5end | ||
|cluster_id=chr2:166060586..166060603,- | |||
|coexpression_cluster_id=C2665 | |coexpression_cluster_id=C2665 | ||
|description=CAGE_peak_3_at_SCN3A_5end | |description=CAGE_peak_3_at_SCN3A_5end | ||
|id=chr2:166060586..166060603,- | |id=chr2:166060586..166060603,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.41e-19;82!UBERON:0006215;5.72e-10;3!UBERON:0006241;3.19e-09;3!UBERON:0003057;3.19e-09;3!UBERON:0010122;4.32e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.57e-58!82;UBERON:0001049!4.01e-58!57;UBERON:0005068!4.01e-58!57;UBERON:0006241!4.01e-58!57;UBERON:0007135!4.01e-58!57;UBERON:0005743!8.08e-55!86;UBERON:0000073!3.27e-53!94;UBERON:0001016!3.27e-53!94;UBERON:0002616!3.15e-50!59;UBERON:0007023!7.64e-50!115;UBERON:0000955!3.31e-49!69;UBERON:0006238!3.31e-49!69;UBERON:0002780!7.22e-48!41;UBERON:0001890!7.22e-48!41;UBERON:0006240!7.22e-48!41;UBERON:0003080!2.09e-46!42;UBERON:0002020!2.61e-39!34;UBERON:0003528!2.61e-39!34;UBERON:0001893!5.32e-39!34;UBERON:0002791!9.55e-38!33;UBERON:0003075!5.28e-37!86;UBERON:0007284!5.28e-37!86;UBERON:0001869!8.15e-37!32;UBERON:0002346!1.56e-34!90;UBERON:0002619!7.19e-30!22;UBERON:0003056!9.77e-28!61;UBERON:0000956!1.52e-27!25;UBERON:0000203!1.52e-27!25;UBERON:0001950!4.47e-27!20;UBERON:0004121!8.59e-23!169;UBERON:0000153!9.90e-23!129;UBERON:0007811!9.90e-23!129;UBERON:0000033!6.30e-22!123;UBERON:0000924!8.89e-22!173;UBERON:0006601!8.89e-22!173;UBERON:0000025!7.35e-16!194;UBERON:0002420!1.45e-13!9;UBERON:0007245!1.45e-13!9;UBERON:0010009!1.45e-13!9;UBERON:0010011!1.45e-13!9;UBERON:0000454!1.45e-13!9;UBERON:0002308!3.41e-13!9;UBERON:0000125!3.41e-13!9;UBERON:0003076!1.40e-12!15;UBERON:0003057!1.40e-12!15;UBERON:0004111!3.53e-12!241;UBERON:0009663!1.09e-10!7;UBERON:0000477!2.26e-10!286;UBERON:0001894!3.91e-10!7;UBERON:0006222!3.91e-10!7;UBERON:0001871!7.46e-10!7;UBERON:0000200!9.40e-10!6;UBERON:0004733!4.02e-09!12;UBERON:0002028!4.02e-09!12;UBERON:0007277!4.02e-09!12;UBERON:0000349!1.27e-08!5;UBERON:0002298!1.27e-08!8;UBERON:0002021!2.23e-08!5;UBERON:0000483!2.99e-08!309;UBERON:0004732!3.05e-08!13;UBERON:0001872!3.90e-08!5;UBERON:0000119!5.48e-08!312;UBERON:0000064!3.21e-07!219;UBERON:0000369!3.58e-07!4;UBERON:0002435!3.58e-07!4;UBERON:0000204!3.58e-07!4;UBERON:0010082!3.58e-07!4 | |ontology_enrichment_uberon=UBERON:0001017!1.57e-58!82;UBERON:0001049!4.01e-58!57;UBERON:0005068!4.01e-58!57;UBERON:0006241!4.01e-58!57;UBERON:0007135!4.01e-58!57;UBERON:0005743!8.08e-55!86;UBERON:0000073!3.27e-53!94;UBERON:0001016!3.27e-53!94;UBERON:0002616!3.15e-50!59;UBERON:0007023!7.64e-50!115;UBERON:0000955!3.31e-49!69;UBERON:0006238!3.31e-49!69;UBERON:0002780!7.22e-48!41;UBERON:0001890!7.22e-48!41;UBERON:0006240!7.22e-48!41;UBERON:0003080!2.09e-46!42;UBERON:0002020!2.61e-39!34;UBERON:0003528!2.61e-39!34;UBERON:0001893!5.32e-39!34;UBERON:0002791!9.55e-38!33;UBERON:0003075!5.28e-37!86;UBERON:0007284!5.28e-37!86;UBERON:0001869!8.15e-37!32;UBERON:0002346!1.56e-34!90;UBERON:0002619!7.19e-30!22;UBERON:0003056!9.77e-28!61;UBERON:0000956!1.52e-27!25;UBERON:0000203!1.52e-27!25;UBERON:0001950!4.47e-27!20;UBERON:0004121!8.59e-23!169;UBERON:0000153!9.90e-23!129;UBERON:0007811!9.90e-23!129;UBERON:0000033!6.30e-22!123;UBERON:0000924!8.89e-22!173;UBERON:0006601!8.89e-22!173;UBERON:0000025!7.35e-16!194;UBERON:0002420!1.45e-13!9;UBERON:0007245!1.45e-13!9;UBERON:0010009!1.45e-13!9;UBERON:0010011!1.45e-13!9;UBERON:0000454!1.45e-13!9;UBERON:0002308!3.41e-13!9;UBERON:0000125!3.41e-13!9;UBERON:0003076!1.40e-12!15;UBERON:0003057!1.40e-12!15;UBERON:0004111!3.53e-12!241;UBERON:0009663!1.09e-10!7;UBERON:0000477!2.26e-10!286;UBERON:0001894!3.91e-10!7;UBERON:0006222!3.91e-10!7;UBERON:0001871!7.46e-10!7;UBERON:0000200!9.40e-10!6;UBERON:0004733!4.02e-09!12;UBERON:0002028!4.02e-09!12;UBERON:0007277!4.02e-09!12;UBERON:0000349!1.27e-08!5;UBERON:0002298!1.27e-08!8;UBERON:0002021!2.23e-08!5;UBERON:0000483!2.99e-08!309;UBERON:0004732!3.05e-08!13;UBERON:0001872!3.90e-08!5;UBERON:0000119!5.48e-08!312;UBERON:0000064!3.21e-07!219;UBERON:0000369!3.58e-07!4;UBERON:0002435!3.58e-07!4;UBERON:0000204!3.58e-07!4;UBERON:0010082!3.58e-07!4 | ||
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|short_description=p3@SCN3A | |short_description=p3@SCN3A | ||
}} | }} |
Latest revision as of 23:33, 17 September 2015
Short description: | p3@SCN3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SCN3A_5end |
Coexpression cluster: | C2665_occipital_parietal_normal_temporal_duodenum_somatostatinoma_putamen |
Association with transcript: | -9bp_to_ENST00000360093, NM_001081676, NM_001081677, NM_006922, uc002ucx.2, uc002ucy.2, uc002ucz.2_5end |
EntrezGene: | SCN3A |
HGNC: | 10590 |
UniProt: | Q9NY46Q9C007 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data