FFCP PHASE1:Hg19::chr1:995067..995099,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc009vjs.1_5end | |association_with_transcript=0bp_to_uc009vjs.1_5end | ||
|cluster_id=chr1:995067..995099,+ | |||
|coexpression_cluster_id=C3732 | |coexpression_cluster_id=C3732 | ||
|description=CAGE_peak_1_at_uc009vjs.1_5end | |description=CAGE_peak_1_at_uc009vjs.1_5end | ||
|id=chr1:995067..995099,+ | |id=chr1:995067..995099,+ | ||
|ontology_enrichment_celltype=CL:0000557!1.73e-11!71;CL:0000066!5.56e-11!254;CL:0002057!5.66e-11!42;CL:0002009!2.56e-10!65;CL:0000860!2.79e-10!45;CL:0000839!5.65e-10!70;CL:0002194!2.48e-09!63;CL:0000576!2.48e-09!63;CL:0000040!2.48e-09!63;CL:0000559!2.48e-09!63;CL:1000497!4.99e-09!18;CL:0002518!4.99e-09!18;CL:0000766!3.85e-08!76;CL:1000449!5.70e-08!16;CL:1000507!2.55e-07!12;CL:1000494!2.55e-07!12;CL:0000763!7.79e-07!112;CL:0000049!7.79e-07!112 | |ontology_enrichment_celltype=CL:0000557!1.73e-11!71;CL:0000066!5.56e-11!254;CL:0002057!5.66e-11!42;CL:0002009!2.56e-10!65;CL:0000860!2.79e-10!45;CL:0000839!5.65e-10!70;CL:0002194!2.48e-09!63;CL:0000576!2.48e-09!63;CL:0000040!2.48e-09!63;CL:0000559!2.48e-09!63;CL:1000497!4.99e-09!18;CL:0002518!4.99e-09!18;CL:0000766!3.85e-08!76;CL:1000449!5.70e-08!16;CL:1000507!2.55e-07!12;CL:1000494!2.55e-07!12;CL:0000763!7.79e-07!112;CL:0000049!7.79e-07!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;8.06e-22;33!CL:0002057;8.06e-22;33!CL:0000473;2.10e-18;39!CL:0000234;2.10e-18;39!CL:1000497;8.65e-13;17!CL:0002518;8.65e-13;17!CL:1000449;3.99e-11;15!CL:0000576;1.20e-10;48!CL:1000507;1.31e-10;10!CL:1000494;1.31e-10;10!CL:0002681;1.93e-08;12!CL:0002584;1.93e-08;12!CL:0000766;1.76e-07;69!CL:0000453;5.68e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,5.76e-17,67;CL:0000473,1.13e-16,48;CL:0000234,1.13e-16,48;CL:0000860,4.99e-16,42;CL:0002057,4.99e-16,42;CL:0002009,1.82e-15,61;CL:0000839,5.97e-15,66;CL:0002194,6.38e-14,59;CL:0000576,6.38e-14,59;CL:0000040,6.38e-14,59;CL:0000559,6.38e-14,59;CL:1000497,1.02e-12,17;CL:0002518,1.02e-12,17;CL:0000766,1.61e-12,72;CL:1000449,4.03e-11,15;CL:0000763,1.13e-10,108;CL:0000049,1.13e-10,108;CL:1000507,1.56e-10,10;CL:1000494,1.56e-10,10;CL:0002681,1.97e-08,12;CL:0002584,1.97e-08,12;CL:0000066,2.57e-07,253;CL:0000453,6.12e-07,5;CL:0002031,8.00e-07,120 | |||
|ontology_enrichment_development_v019=CL:0002057;1.25e-12;42 | |||
|ontology_enrichment_disease=DOID:305!6.20e-08!106;DOID:0050687!6.08e-07!143 | |ontology_enrichment_disease=DOID:305!6.20e-08!106;DOID:0050687!6.08e-07!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!2.51e-10!86;UBERON:0002371!3.99e-09!80;UBERON:0004765!7.19e-09!101;UBERON:0001434!7.19e-09!101;UBERON:0004211!5.70e-08!16;UBERON:0001285!5.70e-08!16;UBERON:0007684!5.70e-08!16;UBERON:0003220!5.70e-08!16;UBERON:0004208!5.70e-08!16;UBERON:0006555!2.14e-07!17;UBERON:0005103!2.14e-07!17;UBERON:0000083!2.14e-07!17;UBERON:0009201!2.14e-07!17;UBERON:0004819!2.14e-07!17;UBERON:0006553!2.14e-07!17;UBERON:0003074!2.14e-07!17;UBERON:0003060!2.14e-07!17;UBERON:0009773!2.55e-07!12;UBERON:0001231!2.55e-07!12;UBERON:0004810!2.55e-07!12;UBERON:0000058!3.51e-07!26;UBERON:0002113!7.71e-07!27;UBERON:0003918!7.71e-07!27;UBERON:0005095!7.71e-07!27;UBERON:0007687!7.71e-07!27;UBERON:0001851!9.23e-07!16 | |ontology_enrichment_uberon=UBERON:0001474!2.51e-10!86;UBERON:0002371!3.99e-09!80;UBERON:0004765!7.19e-09!101;UBERON:0001434!7.19e-09!101;UBERON:0004211!5.70e-08!16;UBERON:0001285!5.70e-08!16;UBERON:0007684!5.70e-08!16;UBERON:0003220!5.70e-08!16;UBERON:0004208!5.70e-08!16;UBERON:0006555!2.14e-07!17;UBERON:0005103!2.14e-07!17;UBERON:0000083!2.14e-07!17;UBERON:0009201!2.14e-07!17;UBERON:0004819!2.14e-07!17;UBERON:0006553!2.14e-07!17;UBERON:0003074!2.14e-07!17;UBERON:0003060!2.14e-07!17;UBERON:0009773!2.55e-07!12;UBERON:0001231!2.55e-07!12;UBERON:0004810!2.55e-07!12;UBERON:0000058!3.51e-07!26;UBERON:0002113!7.71e-07!27;UBERON:0003918!7.71e-07!27;UBERON:0005095!7.71e-07!27;UBERON:0007687!7.71e-07!27;UBERON:0001851!9.23e-07!16 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.99e-11;15!UBERON:0004819;3.99e-11;15!UBERON:0001285;3.99e-11;15!UBERON:0007684;3.99e-11;15!UBERON:0002113;1.01e-10;24!UBERON:0011143;1.01e-10;24!UBERON:0004211;1.31e-10;10!UBERON:0009773;1.31e-10;10!UBERON:0001231;1.31e-10;10!UBERON:0004810;1.31e-10;10!UBERON:0006554;4.90e-09;30!UBERON:0001008;4.90e-09;30!UBERON:0001851;8.41e-09;15!UBERON:0000489;1.19e-08;29!UBERON:0001225;1.93e-08;12!UBERON:0008987;1.93e-08;12!UBERON:0000353;1.31e-07;15 | |||
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|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,1.22866968250754,2.79120467188971,0.436882744260345,0.263766978228454,1.11389717664042,1.32558950291166,1.34465029290355,0.602694528023977,2.19093027116212,1.46379839637152,1.10808952269109,2.44800829493104,0.626909442956176,1.43117993565528,1.91624195102038,0.753255837568817,0.152826811495903,0.246301768349837,0.157421562627358,0.393364276848904,0,0.619264493264304,0,0.30120591877825,0.739508020333575,0,0,0,0.553995408531877,0.601633342410425,0.217010870715852,1.11957737119962,2.59114932815184,1.03030227053675,2.03557534291391,4.91238726795452,1.21292030593908,5.11343881192506,10.2791972005456,7.12324653058738,4.60307827715441,5.37937483711111,3.31075121844019,4.48169384957604,2.5819387343353,1.35426486594342,4.1413314699373,9.5517152520246,9.43838634669355,5.20342617030534,9.9487998393589,7.67204550958849,2.30895910130701,4.3882004676759,1.70489900213078,7.83564944297177,10.7803192691317,4.35975574296902,4.77372463987812,5.73631210262222,3.9093992046921,2.42159801053347,4.78760926783834,4.74693581161327,0.422510572623884,0,0,0.112328631146495,0,0,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0.574752439954483,0,0,0,0.587237189370939,1.14681968437569,0,0.560508562981536,0,0,0,0.411202997999018,0.501559486172034,0,0,0,1.22551502573691,0,0.221533894583621,0,0.896639238079726,0.650296737799391,0.493313713811028,3.03985019564433,0.869409257205157,0,0.267540828089713,0,1.0197840842781,0.383220493601921,0,0,0,0,0,0.301150238155546,0.127986611154418,0,0.473554504088034,0,0.201606743224732,0,0,0,0,0.255725123687061,0,0.50133791063589,0,0,0,0.661743720148475,1.10864698731282,0.966182642624386,0.851363990735132,0,1.11235332835329,0,0.696518949197069,0.664789802594326,0.476981248610684,0,0,1.19257444420023,0.860234595106124,1.04142150482278,0,0.838998872419812,1.92582629358047,0.208994966536811,0.516833518338658,0,1.00416183829401,1.61131726843659,0,2.19655851793353,0.367663080345869,0.81014194788176,0.17859945656816,0.22452937262617,0.112611480483322,0,0.949265659568129,0,0,0,0,0,0.379891534993739,0.264818361626438,0.286836620748814,0,1.12135520028461,0,2.71334303258876,0,0,0.163461903113459,0.756787138224657,0,0.468642863667593,0,0,0.149448680551801,0,0.161872944368132,0.140450806702248,0,1.10550885580591,0.206651562351531,0,0.247266929278557,0,0.718618141816238,0,0.250237039743928,1.10825646193673,0.438977620880838,0,0,0.226864366320042,0,0,0.211931901159562,0,0.515262646192195,0,0,0.168776332241266,0.292311015483596,0,0.0920498986422993,0,0,0.201504196455281,0.67824236924195,1.73934767846967,1.09098448236334,0.286804595389004,1.09776335516636,1.19276791489337,0.929551542956147,2.17688215532278,0.504641701751257,1.09493207722749,0,0,0,0,0,1.30137480043828,0.674338760312407,0.482022059766964,0.992645754591546,0.871517776369625,0.474541238222193,0.539325232640658,0.98110732562673,0.38474715694639,0,0,1.6462960453256,0,0,0,0,0,0.122988438543114,1.71567810298526,0.219500570817251,0,0,0.370353780634118,3.25808305310325,1.03993478527958,1.44331342025273,1.27523445472584,0.234817388471643,1.58803092537181,0.462985512576611,0.951270761172991,0.790204397959275,0,2.95460407304877,1.17002132569619,0.594524649154913,0,1.34385702559088,0.425325291727159,0,0.290633938513962,0,6.40462209264727,1.23267807618516,4.35389042635621,0.864719720501769,2.77733353538036,0.380987365753014,0.763976851116555,0,0,0,0.901029173531752,0,1.23344192779897,0.87192013766656,0.22001485746285,0.387815147273333,0,0,0,0,0,2.83698264046557,0.799266537048298,0.714889968290738,0,0.823240336780769,0,0,1.58390374586686,0.301439377059586,0,1.09970290300263,2.43247561282381,1.00451418286425,0,0.479249710983165,1.14861935834114,1.42636905040718,0.144781306667579,0,0,2.35378802386407,0,0,0.128343036279748,0.508189248444927,0,0.773288812777695,1.50764638800914,1.27587750330633,0,0,0,0.12269149171914,0.500170521059677,2.17012018959788,0.207970861530807,0.178428988797162,0.473107245101804,0.117141414992713,0,0,0,0,0.184369168541703,0.260650843404249,1.56640925970192,1.02943027143257,0,0.431428401637234,0,0.909382714338778,0,0,0,0,0,0,0,0,1.48418066444991,0,0,0,0.519254429183621,0,0,0.601519410909855,0.920809889358963,0.114814448164607,0.728364672026868,0.524497659837696,2.25599806453706,3.23464415838542,4.70609861506113,7.30696123266303,3.79985864014353,1.13733384070897,1.36074964221213,0.431831832204279,1.54227252690289,4.6060894382455,10.0337954770971,3.3133915495855,3.3243040357149,6.94011739638753,0,0,1.53870075069834,1.31205858279882,0.976135183992909,0.309123034943167,1.55668090191184,0.82509499920588,0,0,0,0.48335359146061,0.308097234229289,0,0.827019434907183,0.214840489736547,0.145016693914229,0.596586391912706,0.445160178233687,1.32227932288782,1.53752053892085,2.16941611240793,1.51736671283325,0,0.62962469366128,0.6970372701606,0.308033580176089,0.532306030317022,0,1.66791797193528,0.286249773483982,1.86079184679834,1.2655176988749,0,0.255897791311334,0.42793898803392,0.318203247925937,1.56989728039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| ||
|short_description=p1@uc009vjs.1 | |short_description=p1@uc009vjs.1 | ||
}} | }} |
Latest revision as of 11:45, 28 July 2015
Short description: | p1@uc009vjs.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc009vjs.1_5end |
Coexpression cluster: | C3732_migratory_immature_CD14_Astrocyte_papillotubular_clear_mycosis |
Association with transcript: | 0bp_to_uc009vjs.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 5.76e-17 | 67 |
defensive cell | 1.13e-16 | 48 |
phagocyte | 1.13e-16 | 48 |
classical monocyte | 4.99e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.99e-16 | 42 |
macrophage dendritic cell progenitor | 1.82e-15 | 61 |
myeloid lineage restricted progenitor cell | 5.97e-15 | 66 |
monopoietic cell | 6.38e-14 | 59 |
monocyte | 6.38e-14 | 59 |
monoblast | 6.38e-14 | 59 |
promonocyte | 6.38e-14 | 59 |
kidney cell | 1.02e-12 | 17 |
kidney epithelial cell | 1.02e-12 | 17 |
myeloid leukocyte | 1.61e-12 | 72 |
epithelial cell of nephron | 4.03e-11 | 15 |
myeloid cell | 1.13e-10 | 108 |
common myeloid progenitor | 1.13e-10 | 108 |
kidney tubule cell | 1.56e-10 | 10 |
nephron tubule epithelial cell | 1.56e-10 | 10 |
kidney cortical cell | 1.97e-08 | 12 |
renal cortical epithelial cell | 1.97e-08 | 12 |
epithelial cell | 2.57e-07 | 253 |
Langerhans cell | 6.12e-07 | 5 |
hematopoietic lineage restricted progenitor cell | 8.00e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
skeletal element | 3.70e-15 | 90 |
bone element | 4.21e-15 | 82 |
bone marrow | 4.13e-14 | 76 |
skeletal system | 3.49e-13 | 100 |
nephron epithelium | 4.03e-11 | 15 |
renal tubule | 4.03e-11 | 15 |
nephron tubule | 4.03e-11 | 15 |
nephron | 4.03e-11 | 15 |
uriniferous tubule | 4.03e-11 | 15 |
nephrogenic mesenchyme | 4.03e-11 | 15 |
immune system | 1.10e-10 | 93 |
nephron tubule epithelium | 1.56e-10 | 10 |
excretory tube | 4.10e-10 | 16 |
kidney epithelium | 4.10e-10 | 16 |
kidney | 1.66e-09 | 26 |
kidney mesenchyme | 1.66e-09 | 26 |
upper urinary tract | 1.66e-09 | 26 |
kidney rudiment | 1.66e-09 | 26 |
kidney field | 1.66e-09 | 26 |
hematopoietic system | 5.99e-09 | 98 |
blood island | 5.99e-09 | 98 |
cortex | 9.65e-09 | 15 |
cortex of kidney | 1.97e-08 | 12 |
renal parenchyma | 1.97e-08 | 12 |
cavitated compound organ | 6.90e-08 | 31 |
hemolymphoid system | 9.32e-08 | 108 |
parenchyma | 1.34e-07 | 15 |