FFCP PHASE1:Hg19::chr1:197886665..197886732,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56956 | |EntrezGene=56956 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14222 | |HGNC=14222 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NQ69 | |UniProt=Q9NQ69 | ||
|association_with_transcript=136bp_to_ENST00000367387_5end | |association_with_transcript=136bp_to_ENST00000367387_5end | ||
|cluster_id=chr1:197886665..197886732,+ | |||
|coexpression_cluster_id=C38 | |coexpression_cluster_id=C38 | ||
|description=CAGE_peak_3_at_LHX9_5end | |description=CAGE_peak_3_at_LHX9_5end | ||
|id=chr1:197886665..197886732,+ | |id=chr1:197886665..197886732,+ | ||
|ontology_enrichment_celltype=CL:0002620!5.17e-19!23;CL:0000057!8.94e-09!75 | |ontology_enrichment_celltype=CL:0002620!5.17e-19!23;CL:0000057!8.94e-09!75 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.83e-42;23!CL:0000511;1.58e-07;1!CL:0002625;1.58e-07;1!CL:0000216;1.58e-07;1!CL:0002616;2.51e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,2.44e-42,23;CL:0000057,8.96e-13,76;CL:0000511,1.63e-07,1;CL:0002625,1.63e-07,1;CL:0000216,1.63e-07,1;CL:0002616,2.37e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0003099;5.18e-07;1!UBERON:0003852;5.18e-07;1 | |||
|ontology_enrichment_disease=DOID:17!1.02e-10!5;DOID:450!1.02e-10!5;DOID:66!1.02e-10!5;DOID:423!1.02e-10!5;DOID:0080000!1.02e-10!5;DOID:11722!1.02e-10!5 | |ontology_enrichment_disease=DOID:17!1.02e-10!5;DOID:450!1.02e-10!5;DOID:66!1.02e-10!5;DOID:423!1.02e-10!5;DOID:0080000!1.02e-10!5;DOID:11722!1.02e-10!5 | ||
|ontology_enrichment_disease_v019=DOID:17;1.62e-30;5!DOID:450;1.62e-30;5!DOID:66;1.62e-30;5!DOID:423;1.62e-30;5!DOID:0080000;1.62e-30;5!DOID:11722;1.62e-30;5!DOID:1115;1.83e-13;20!DOID:1192;1.12e-08;3!DOID:3093;5.11e-08;11!DOID:3371;9.90e-08;1!DOID:4549;9.90e-08;1!DOID:5861;9.90e-08;1!DOID:6496;9.90e-08;1!DOID:2513;2.51e-07;1!DOID:3369;3.11e-07;1!DOID:4235;5.18e-07;1!DOID:3571;5.18e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.23e-30,5;DOID:450,1.23e-30,5;DOID:66,1.23e-30,5;DOID:423,1.23e-30,5;DOID:0080000,1.23e-30,5;DOID:11722,1.23e-30,5;DOID:1115,1.66e-13,20;DOID:1192,9.78e-09,3;DOID:3093,4.74e-08,11;DOID:3371,9.91e-08,1;DOID:4549,9.91e-08,1;DOID:5861,9.91e-08,1;DOID:6496,9.91e-08,1;DOID:2513,2.52e-07,1;DOID:3369,2.84e-07,1;DOID:4235,5.19e-07,1;DOID:3571,6.97e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002097!6.36e-13!40;UBERON:0002199!4.52e-12!45;UBERON:0002416!4.52e-12!45 | |ontology_enrichment_uberon=UBERON:0002097!6.36e-13!40;UBERON:0002199!4.52e-12!45;UBERON:0002416!4.52e-12!45 | ||
|ontology_enrichment_uberon_v019=UBERON:0002097;2.97e-21;41!UBERON:0002199;3.19e-16;46!UBERON:0002416;3.19e-16;46!UBERON:0003102;1.16e-11;50!UBERON:0001136;1.58e-07;1!UBERON:0001343;1.58e-07;1!UBERON:0004910;1.58e-07;1!UBERON:0004813;1.58e-07;1!UBERON:0007195;5.18e-07;1!UBERON:0005705;5.18e-07;1!UBERON:0008193;5.18e-07;1!UBERON:0010912;5.18e-07;1!UBERON:0002514;5.18e-07;1!UBERON:0003457;5.18e-07;1!UBERON:0008907;5.18e-07;1!UBERON:0008001;5.18e-07;1!UBERON:0007213;5.18e-07;1!UBERON:0009891;5.18e-07;1!UBERON:0007914;5.18e-07;1!UBERON:0007375;5.18e-07;1!UBERON:0003323;5.18e-07;1!UBERON:0010258;5.18e-07;1!UBERON:0005253;5.18e-07;1!UBERON:0007842;5.18e-07;1!UBERON:0002397;5.18e-07;1!UBERON:0003113;5.18e-07;1!UBERON:0003277;5.18e-07;1!UBERON:0001709;5.18e-07;1!UBERON:0002244;5.18e-07;1!UBERON:0005620;5.18e-07;1!UBERON:0010364;5.18e-07;1!UBERON:0004288;5.18e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,2.67e-26,41;UBERON:0002199,4.01e-23,46;UBERON:0002416,4.01e-23,46;UBERON:0003102,1.20e-10,99;UBERON:0001136,1.63e-07,1;UBERON:0001343,1.63e-07,1;UBERON:0004910,1.63e-07,1;UBERON:0005154,1.63e-07,1;UBERON:0005295,1.63e-07,1;UBERON:0004813,1.63e-07,1;UBERON:0005297,1.63e-07,1;UBERON:0005294,1.63e-07,1;UBERON:0010141,1.63e-07,1;UBERON:0005891,1.63e-07,1;UBERON:0007195,6.20e-07,1;UBERON:0005705,7.40e-07,1;UBERON:0008193,7.40e-07,1;UBERON:0010912,7.40e-07,1;UBERON:0002514,7.40e-07,1;UBERON:0003457,7.40e-07,1;UBERON:0008907,7.40e-07,1;UBERON:0008001,7.40e-07,1;UBERON:0007213,7.40e-07,1;UBERON:0009891,7.40e-07,1;UBERON:0007914,7.40e-07,1;UBERON:0009292,7.40e-07,1;UBERON:0003099,7.40e-07,1;UBERON:0007375,7.40e-07,1;UBERON:0003323,7.40e-07,1;UBERON:0010258,7.40e-07,1;UBERON:0007842,7.40e-07,1;UBERON:0009494,7.40e-07,1;UBERON:0010042,7.40e-07,1;UBERON:0010045,7.40e-07,1;UBERON:0010259,7.40e-07,1;UBERON:0010359,7.40e-07,1;UBERON:0009526,7.40e-07,1;UBERON:0002397,7.40e-07,1;UBERON:0003113,7.40e-07,1;UBERON:0003277,7.40e-07,1;UBERON:0001709,7.40e-07,1;UBERON:0004066,7.40e-07,1;UBERON:0002244,7.40e-07,1;UBERON:0005620,7.40e-07,1;UBERON:0004362,7.40e-07,1;UBERON:0010364,7.40e-07,1;UBERON:0010046,7.40e-07,1;UBERON:0005868,7.40e-07,1;UBERON:0007238,7.40e-07,1;UBERON:0004288,7.40e-07,1;UBERON:0004068,7.40e-07,1;UBERON:0010334,7.40e-07,1;UBERON:0003852,7.40e-07,1;UBERON:0010253,7.40e-07,1 | |||
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| ||
|short_description=p3@LHX9 | |short_description=p3@LHX9 | ||
}} | }} |
Latest revision as of 13:28, 19 September 2015
Short description: | p3@LHX9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LHX9_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | 136bp_to_ENST00000367387_5end |
EntrezGene: | LHX9 |
HGNC: | 14222 |
UniProt: | Q9NQ69 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 2.44e-42 | 23 |
fibroblast | 8.96e-13 | 76 |
androgen binding protein secreting cell | 1.63e-07 | 1 |
seminiferous tubule epithelial cell | 1.63e-07 | 1 |
Sertoli cell | 1.63e-07 | 1 |
perirenal adipocyte cell | 2.37e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.23e-30 | 5 |
myotonic disease | 1.23e-30 | 5 |
muscle tissue disease | 1.23e-30 | 5 |
myopathy | 1.23e-30 | 5 |
muscular disease | 1.23e-30 | 5 |
myotonic dystrophy | 1.23e-30 | 5 |
sarcoma | 1.66e-13 | 20 |
peripheral nervous system neoplasm | 9.78e-09 | 3 |
nervous system cancer | 4.74e-08 | 11 |
chondrosarcoma | 9.91e-08 | 1 |
extraosseous chondrosarcoma | 9.91e-08 | 1 |
myxoid chondrosarcoma | 9.91e-08 | 1 |
extraskeletal myxoid chondrosarcoma | 9.91e-08 | 1 |
basal cell carcinoma | 2.52e-07 | 1 |
peripheral primitive neuroectodermal tumor | 2.84e-07 | 1 |
spindle cell sarcoma | 5.19e-07 | 1 |
liver cancer | 6.97e-07 | 1 |