FFCP PHASE1:Hg19::chr1:13840329..13840340,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=126755 | |EntrezGene=126755 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27005 | |HGNC=27005 | ||
|TSSclassifier=strong | |||
|UniProt=Q5VT99 | |UniProt=Q5VT99 | ||
|association_with_transcript=-87bp_to_NM_001010847,uc001avb.2_5end | |association_with_transcript=-87bp_to_NM_001010847,uc001avb.2_5end | ||
|cluster_id=chr1:13840329..13840340,- | |||
|coexpression_cluster_id=C24 | |coexpression_cluster_id=C24 | ||
|description=CAGE_peak_6_at_LRRC38_5end | |description=CAGE_peak_6_at_LRRC38_5end | ||
|id=chr1:13840329..13840340,- | |id=chr1:13840329..13840340,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002548;5.92e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002548,6.34e-08,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3112!5.62e-12!1 | |ontology_enrichment_disease=DOID:3112!5.62e-12!1 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0008814!2.24e-24!15;UBERON:0001905!1.20e-22!2;UBERON:0002757!1.20e-22!2;UBERON:0010134!1.20e-22!2;UBERON:0002784!1.20e-22!2;UBERON:0005408!1.20e-22!2;UBERON:0001899!1.20e-22!2;UBERON:0001630!2.06e-22!2;UBERON:0005090!2.06e-22!2;UBERON:0001042!1.02e-16!10;UBERON:0009145!1.02e-16!10;UBERON:0006562!3.18e-15!11;UBERON:0009722!3.31e-15!11;UBERON:0007690!3.31e-15!11;UBERON:0001723!6.54e-15!3;UBERON:0001033!6.54e-15!3;UBERON:0010056!6.54e-15!3;UBERON:0005418!3.65e-12!1;UBERON:0001389!3.65e-12!1;UBERON:0000026!3.65e-12!1;UBERON:0008784!3.65e-12!1;UBERON:0006058!3.65e-12!1;UBERON:0003663!3.65e-12!1;UBERON:0001383!3.65e-12!1;UBERON:0004256!3.65e-12!1;UBERON:0002529!3.65e-12!1;UBERON:0004708!3.65e-12!1;UBERON:0002101!3.65e-12!1;UBERON:0004709!3.65e-12!1;UBERON:0003661!3.65e-12!1;UBERON:0002471!3.65e-12!1;UBERON:0004357!3.65e-12!1;UBERON:0009872!3.65e-12!1;UBERON:0004347!3.65e-12!1;UBERON:0005420!3.65e-12!1;UBERON:0005732!3.65e-12!1;UBERON:0006057!3.65e-12!1;UBERON:0000978!3.65e-12!1;UBERON:0002103!3.65e-12!1;UBERON:0001665!3.65e-12!1;UBERON:0003823!3.65e-12!1;UBERON:0000154!3.65e-12!1;UBERON:0005733!3.65e-12!1;UBERON:0005730!3.65e-12!1;UBERON:0002426!5.05e-12!1;UBERON:0003831!5.05e-12!1;UBERON:0003898!5.05e-12!1;UBERON:0004830!5.05e-12!1;UBERON:0001774!5.05e-12!1;UBERON:0003830!5.05e-12!1;UBERON:0005175!5.05e-12!1;UBERON:0003897!5.05e-12!1;UBERON:0001103!5.05e-12!1;UBERON:0010084!5.05e-12!1;UBERON:0003296!8.20e-12!4;UBERON:0010133!8.20e-12!4;UBERON:0002370!4.20e-11!4;UBERON:0005058!4.20e-11!4;UBERON:0009113!4.20e-11!4;UBERON:0003295!4.20e-11!4;UBERON:0005562!4.20e-11!4;UBERON:0002368!2.20e-10!35;UBERON:0000974!8.12e-10!10;UBERON:0002046!2.68e-09!5;UBERON:0004117!2.68e-09!5;UBERON:0007689!2.68e-09!5;UBERON:0007123!2.68e-09!5;UBERON:0003091!2.68e-09!5;UBERON:0001557!6.53e-09!19;UBERON:0000949!5.52e-08!45;UBERON:0003351!1.07e-07!6;UBERON:0001894!4.08e-07!7;UBERON:0006222!4.08e-07!7 | |ontology_enrichment_uberon=UBERON:0008814!2.24e-24!15;UBERON:0001905!1.20e-22!2;UBERON:0002757!1.20e-22!2;UBERON:0010134!1.20e-22!2;UBERON:0002784!1.20e-22!2;UBERON:0005408!1.20e-22!2;UBERON:0001899!1.20e-22!2;UBERON:0001630!2.06e-22!2;UBERON:0005090!2.06e-22!2;UBERON:0001042!1.02e-16!10;UBERON:0009145!1.02e-16!10;UBERON:0006562!3.18e-15!11;UBERON:0009722!3.31e-15!11;UBERON:0007690!3.31e-15!11;UBERON:0001723!6.54e-15!3;UBERON:0001033!6.54e-15!3;UBERON:0010056!6.54e-15!3;UBERON:0005418!3.65e-12!1;UBERON:0001389!3.65e-12!1;UBERON:0000026!3.65e-12!1;UBERON:0008784!3.65e-12!1;UBERON:0006058!3.65e-12!1;UBERON:0003663!3.65e-12!1;UBERON:0001383!3.65e-12!1;UBERON:0004256!3.65e-12!1;UBERON:0002529!3.65e-12!1;UBERON:0004708!3.65e-12!1;UBERON:0002101!3.65e-12!1;UBERON:0004709!3.65e-12!1;UBERON:0003661!3.65e-12!1;UBERON:0002471!3.65e-12!1;UBERON:0004357!3.65e-12!1;UBERON:0009872!3.65e-12!1;UBERON:0004347!3.65e-12!1;UBERON:0005420!3.65e-12!1;UBERON:0005732!3.65e-12!1;UBERON:0006057!3.65e-12!1;UBERON:0000978!3.65e-12!1;UBERON:0002103!3.65e-12!1;UBERON:0001665!3.65e-12!1;UBERON:0003823!3.65e-12!1;UBERON:0000154!3.65e-12!1;UBERON:0005733!3.65e-12!1;UBERON:0005730!3.65e-12!1;UBERON:0002426!5.05e-12!1;UBERON:0003831!5.05e-12!1;UBERON:0003898!5.05e-12!1;UBERON:0004830!5.05e-12!1;UBERON:0001774!5.05e-12!1;UBERON:0003830!5.05e-12!1;UBERON:0005175!5.05e-12!1;UBERON:0003897!5.05e-12!1;UBERON:0001103!5.05e-12!1;UBERON:0010084!5.05e-12!1;UBERON:0003296!8.20e-12!4;UBERON:0010133!8.20e-12!4;UBERON:0002370!4.20e-11!4;UBERON:0005058!4.20e-11!4;UBERON:0009113!4.20e-11!4;UBERON:0003295!4.20e-11!4;UBERON:0005562!4.20e-11!4;UBERON:0002368!2.20e-10!35;UBERON:0000974!8.12e-10!10;UBERON:0002046!2.68e-09!5;UBERON:0004117!2.68e-09!5;UBERON:0007689!2.68e-09!5;UBERON:0007123!2.68e-09!5;UBERON:0003091!2.68e-09!5;UBERON:0001557!6.53e-09!19;UBERON:0000949!5.52e-08!45;UBERON:0003351!1.07e-07!6;UBERON:0001894!4.08e-07!7;UBERON:0006222!4.08e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;4.27e-79;2!UBERON:0002757;4.27e-79;2!UBERON:0010134;4.27e-79;2!UBERON:0005408;4.27e-79;2!UBERON:0001899;4.27e-79;2!UBERON:0001389;2.70e-40;1!UBERON:0000026;2.70e-40;1!UBERON:0008784;2.70e-40;1!UBERON:0006058;2.70e-40;1!UBERON:0003663;2.70e-40;1!UBERON:0004256;2.70e-40;1!UBERON:0004708;2.70e-40;1!UBERON:0002101;2.70e-40;1!UBERON:0004709;2.70e-40;1!UBERON:0002529;2.70e-40;1!UBERON:0010538;2.70e-40;1!UBERON:0003661;2.70e-40;1!UBERON:0010890;2.70e-40;1!UBERON:0002471;2.70e-40;1!UBERON:0001383;2.70e-40;1!UBERON:0010758;2.70e-40;1!UBERON:0010707;2.70e-40;1!UBERON:0000978;2.70e-40;1!UBERON:0002103;2.70e-40;1!UBERON:0001665;2.70e-40;1!UBERON:0003823;2.70e-40;1!UBERON:0000154;2.70e-40;1!UBERON:0010709;2.70e-40;1!UBERON:0003296;3.00e-40;4!UBERON:0010133;3.00e-40;4!UBERON:0002784;3.00e-40;4!UBERON:0001894;1.52e-23;7!UBERON:0005090;6.30e-21;2!UBERON:0001630;6.30e-21;2!UBERON:0001134;6.29e-11;16!UBERON:0002036;6.29e-11;16 | |||
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|short_description=p6@LRRC38 | |short_description=p6@LRRC38 | ||
}} | }} |
Latest revision as of 15:40, 16 September 2015
Short description: | p6@LRRC38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LRRC38_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | -87bp_to_NM_001010847, uc001avb.2_5end |
EntrezGene: | LRRC38 |
HGNC: | 27005 |
UniProt: | Q5VT99 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiac fibroblast | 6.34e-08 | 6 |