FFCP PHASE1:Hg19::chr19:677885..677909,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:677885..677909,+ | |||
|coexpression_cluster_id=C50 | |coexpression_cluster_id=C50 | ||
|description=CAGE_peak_at_chr19:677885..677909,+ | |description=CAGE_peak_at_chr19:677885..677909,+ | ||
|id=chr19:677885..677909,+ | |id=chr19:677885..677909,+ | ||
|ontology_enrichment_celltype=CL:0002368!5.92e-08!13;CL:0000136!4.02e-07!15 | |ontology_enrichment_celltype=CL:0002368!5.92e-08!13;CL:0000136!4.02e-07!15 | ||
|ontology_enrichment_celltype_v019=CL:0002541;1.96e-38;3!CL:0002615;1.33e-17;3!CL:0000136;1.61e-15;13!CL:0002616;1.18e-13;1!CL:0000349;6.29e-11;19!CL:1000746;5.66e-08;7!CL:1000612;5.66e-08;7!CL:0000650;1.81e-07;2!CL:1000500;1.81e-07;2!CL:1000618;1.81e-07;2!CL:1001318;1.81e-07;2!CL:0002173;1.81e-07;2!CL:0002617;1.81e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,3.06e-38,3;CL:0002615,1.39e-17,3;CL:0002616,6.65e-14,1;CL:0000136,1.59e-13,15;CL:0000349,6.71e-11,19;CL:1000746,6.29e-08,7;CL:1000612,6.29e-08,7;CL:0002617,1.99e-07,2;CL:0000650,2.40e-07,2;CL:1000500,2.40e-07,2;CL:1000618,2.40e-07,2;CL:1001318,2.40e-07,2;CL:0002173,2.40e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0000358;5.15e-14;1!UBERON:0003124;1.18e-13;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000478!4.98e-10!24;UBERON:0003124!1.43e-08!7;UBERON:0005631!3.09e-08!14;UBERON:0000158!3.09e-08!14;UBERON:0004457!4.34e-07!12;UBERON:0000042!4.34e-07!12;UBERON:0003688!6.48e-07!6;UBERON:0002358!6.48e-07!6;UBERON:0003684!6.48e-07!6;UBERON:0001178!6.48e-07!6;UBERON:0004119!6.75e-07!169;UBERON:0000925!6.75e-07!169;UBERON:0006595!6.75e-07!169 | |ontology_enrichment_uberon=UBERON:0000478!4.98e-10!24;UBERON:0003124!1.43e-08!7;UBERON:0005631!3.09e-08!14;UBERON:0000158!3.09e-08!14;UBERON:0004457!4.34e-07!12;UBERON:0000042!4.34e-07!12;UBERON:0003688!6.48e-07!6;UBERON:0002358!6.48e-07!6;UBERON:0003684!6.48e-07!6;UBERON:0001178!6.48e-07!6;UBERON:0004119!6.75e-07!169;UBERON:0000925!6.75e-07!169;UBERON:0006595!6.75e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0003124;1.96e-38;3!UBERON:0000920;1.96e-38;3!UBERON:0005631;1.66e-20;10!UBERON:0000158;1.66e-20;10!UBERON:0000478;1.48e-18;24!UBERON:0003688;2.83e-09;6!UBERON:0002358;2.83e-09;6!UBERON:0003684;2.83e-09;6!UBERON:0001178;2.83e-09;6!UBERON:0000074;5.66e-08;7!UBERON:0001229;5.66e-08;7!UBERON:0003567;1.81e-07;2!UBERON:0003838;1.81e-07;2!UBERON:0003586;1.81e-07;2!UBERON:0005169;1.81e-07;2!UBERON:0002321;1.81e-07;2!UBERON:0005406;1.81e-07;2!UBERON:0005215;1.81e-07;2!UBERON:0002303;1.81e-07;2!UBERON:0002319;1.81e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,3.06e-38,3;UBERON:0003124,9.75e-29,7;UBERON:0005631,2.64e-22,14;UBERON:0000158,2.64e-22,14;UBERON:0000478,1.73e-18,24;UBERON:0003688,2.89e-09,6;UBERON:0002358,2.89e-09,6;UBERON:0003684,2.89e-09,6;UBERON:0001178,2.89e-09,6;UBERON:0004923,1.06e-08,66;UBERON:0010532,6.29e-08,7;UBERON:0000074,6.29e-08,7;UBERON:0001229,6.29e-08,7;UBERON:0001230,6.29e-08,7;UBERON:0003220,6.29e-08,7;UBERON:0005749,6.29e-08,7;UBERON:0004199,6.29e-08,7;UBERON:0004209,6.29e-08,7;UBERON:0004198,6.29e-08,7;UBERON:0005406,1.36e-07,2;UBERON:0003567,2.40e-07,2;UBERON:0003838,2.40e-07,2;UBERON:0003586,2.40e-07,2;UBERON:0005169,2.40e-07,2;UBERON:0002321,2.40e-07,2;UBERON:0005215,2.40e-07,2;UBERON:0002303,2.40e-07,2;UBERON:0002319,2.40e-07,2;UBERON:0005103,4.84e-07,8;UBERON:0000083,4.84e-07,8;UBERON:0009201,4.84e-07,8;UBERON:0006553,4.84e-07,8;UBERON:0003074,4.84e-07,8;UBERON:0003060,4.84e-07,8 | |||
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| ||
|short_description=p@chr19:677885..677909,+ | |short_description=p@chr19:677885..677909,+ | ||
}} | }} |
Latest revision as of 18:20, 27 July 2015
Short description: | p@chr19:677885..677909, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:677885..677909, + |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 3.06e-38 | 3 |
adipocyte of omentum tissue | 1.39e-17 | 3 |
perirenal adipocyte cell | 6.65e-14 | 1 |
fat cell | 1.59e-13 | 15 |
extraembryonic cell | 6.71e-11 | 19 |
glomerular cell | 6.29e-08 | 7 |
kidney corpuscule cell | 6.29e-08 | 7 |
adipocyte of breast | 1.99e-07 | 2 |
mesangial cell | 2.40e-07 | 2 |
kidney interstitial cell | 2.40e-07 | 2 |
juxtaglomerular complex cell | 2.40e-07 | 2 |
renal interstitial pericyte | 2.40e-07 | 2 |
extraglomerular mesangial cell | 2.40e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 3.06e-38 | 3 |
chorion | 9.75e-29 | 7 |
extraembryonic membrane | 2.64e-22 | 14 |
membranous layer | 2.64e-22 | 14 |
extraembryonic structure | 1.73e-18 | 24 |
omentum | 2.89e-09 | 6 |
peritoneum | 2.89e-09 | 6 |
abdominal cavity | 2.89e-09 | 6 |
visceral peritoneum | 2.89e-09 | 6 |
organ component layer | 1.06e-08 | 66 |
primitive nephron | 6.29e-08 | 7 |
renal glomerulus | 6.29e-08 | 7 |
renal corpuscle | 6.29e-08 | 7 |
glomerular capsule | 6.29e-08 | 7 |
metanephric mesenchyme | 6.29e-08 | 7 |
glomerular tuft | 6.29e-08 | 7 |
S-shaped body | 6.29e-08 | 7 |
renal vesicle | 6.29e-08 | 7 |
comma-shaped body | 6.29e-08 | 7 |
perirenal fat | 1.36e-07 | 2 |
abdomen connective tissue | 2.40e-07 | 2 |
abdominal segment connective tissue | 2.40e-07 | 2 |
trunk connective tissue | 2.40e-07 | 2 |
interstitial tissue | 2.40e-07 | 2 |
extraglomerular mesangium | 2.40e-07 | 2 |
kidney interstitium | 2.40e-07 | 2 |
juxtaglomerular apparatus | 2.40e-07 | 2 |
mesangium | 2.40e-07 | 2 |
mesonephric epithelium | 4.84e-07 | 8 |
mesonephric tubule | 4.84e-07 | 8 |
nephric duct | 4.84e-07 | 8 |
renal duct | 4.84e-07 | 8 |
mesonephric duct | 4.84e-07 | 8 |
pronephric duct | 4.84e-07 | 8 |