FFCP PHASE1:Hg19::chr20:49269691..49269695,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-43bp_to_ENST00000435177_5end | |association_with_transcript=-43bp_to_ENST00000435177_5end | ||
|cluster_id=chr20:49269691..49269695,+ | |||
|coexpression_cluster_id=C418 | |||
|description=CAGE_peak_1_at_ENST00000435177_5end | |description=CAGE_peak_1_at_ENST00000435177_5end | ||
|id=chr20:49269691..49269695,+ | |id=chr20:49269691..49269695,+ | ||
|ontology_enrichment_celltype=CL:0002504!6.94e-44!3;CL:1000279!6.94e-44!3;CL:1000280!6.94e-44!3;CL:0002195!1.44e-29!2;CL:0002571!1.44e-29!2;CL:1000487!2.15e-08!2;CL:1000415!2.67e-08!2 | |ontology_enrichment_celltype=CL:0002504!6.94e-44!3;CL:1000279!6.94e-44!3;CL:1000280!6.94e-44!3;CL:0002195!1.44e-29!2;CL:0002571!1.44e-29!2;CL:1000487!2.15e-08!2;CL:1000415!2.67e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0002504;1.31e-98;3!CL:1000279;1.31e-98;3!CL:1000280;1.31e-98;3!CL:0002195;9.13e-66;2!CL:0002571;9.13e-66;2!CL:0002563;1.12e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002504,1.11e-98,3;CL:1000279,1.11e-98,3;CL:1000280,1.11e-98,3;CL:0002195,1.08e-65,2;CL:0002571,1.08e-65,2;CL:0002563,1.12e-09,4;CL:0000192,1.14e-07,43;CL:0000514,1.14e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001155!4.06e-15!9;UBERON:0000059!1.75e-12!11;UBERON:0005409!5.48e-10!35;UBERON:0001135!2.63e-09!15;UBERON:0003929!3.16e-09!54;UBERON:0000160!1.40e-08!27;UBERON:0001007!4.33e-08!155;UBERON:0001555!4.33e-08!155;UBERON:0007026!4.33e-08!155;UBERON:0004921!5.19e-08!129;UBERON:0004185!5.19e-08!129;UBERON:0000490!1.69e-07!138;UBERON:0004119!2.50e-07!169;UBERON:0000925!2.50e-07!169;UBERON:0006595!2.50e-07!169 | |ontology_enrichment_uberon=UBERON:0001155!4.06e-15!9;UBERON:0000059!1.75e-12!11;UBERON:0005409!5.48e-10!35;UBERON:0001135!2.63e-09!15;UBERON:0003929!3.16e-09!54;UBERON:0000160!1.40e-08!27;UBERON:0001007!4.33e-08!155;UBERON:0001555!4.33e-08!155;UBERON:0007026!4.33e-08!155;UBERON:0004921!5.19e-08!129;UBERON:0004185!5.19e-08!129;UBERON:0000490!1.69e-07!138;UBERON:0004119!2.50e-07!169;UBERON:0000925!2.50e-07!169;UBERON:0006595!2.50e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0001155;1.31e-33;9!UBERON:0000160;7.07e-30;17!UBERON:0000059;1.12e-27;11!UBERON:0005409;1.50e-23;22!UBERON:0001135;1.52e-20;15!UBERON:0004921;3.47e-16;33!UBERON:0002385;3.78e-10;31!UBERON:0001015;3.78e-10;31!UBERON:0000383;3.78e-10;31!UBERON:0001242;1.12e-09;4!UBERON:0001262;1.12e-09;4!UBERON:0004786;1.12e-09;4!UBERON:0004808;1.12e-09;4!UBERON:0001277;1.12e-09;4!UBERON:0001007;9.64e-09;81!UBERON:0002107;6.70e-08;19!UBERON:0006925;6.70e-08;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001155,1.24e-33,9;UBERON:0000160,6.82e-30,17;UBERON:0000059,1.07e-27,11;UBERON:0005409,6.29e-21,25;UBERON:0001135,1.47e-20,15;UBERON:0004921,2.09e-10,118;UBERON:0001242,1.12e-09,4;UBERON:0001262,1.12e-09,4;UBERON:0004786,1.12e-09,4;UBERON:0004808,1.12e-09,4;UBERON:0001277,1.12e-09,4;UBERON:0001007,1.51e-08,145;UBERON:0001555,1.51e-08,145;UBERON:0007026,1.51e-08,145;UBERON:0000490,1.95e-08,148;UBERON:0002107,6.82e-08,19;UBERON:0006925,6.82e-08,19;UBERON:0008836,6.82e-08,19;UBERON:0004119,8.84e-08,160;UBERON:0000925,8.84e-08,160;UBERON:0006595,8.84e-08,160;UBERON:0005256,3.50e-07,122;UBERON:0008835,6.09e-07,22;UBERON:0003894,6.09e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14382394926518,0,0,0,2.13235169245527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229628896329213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.1156635578327,3.0199073270966,2.94531005864216,0,0,0,0,0,0,0,0.282810863907425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.3371110523752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14382394926518,0,0,0,2.13235169245527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229628896329213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.1156635578327,3.0199073270966,2.94531005864216,0,0,0,0,0,0,0,0.282810863907425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.3371110523752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@ENST00000435177 | |short_description=p1@ENST00000435177 | ||
}} | }} |
Latest revision as of 15:15, 28 July 2015
Short description: | p1@ENST00000435177 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000435177_5end |
Coexpression cluster: | C418_normal_Melanocyte_Hep2_cervical_umbilical_osteosarcoma_gall |
Association with transcript: | -43bp_to_ENST00000435177_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
enteric smooth muscle cell | 1.11e-98 | 3 |
smooth muscle cell of large intestine | 1.11e-98 | 3 |
smooth muscle cell of colon | 1.11e-98 | 3 |
hepatic stem cell | 1.08e-65 | 2 |
hepatic mesenchymal stem cell | 1.08e-65 | 2 |
intestinal epithelial cell | 1.12e-09 | 4 |
smooth muscle cell | 1.14e-07 | 43 |
smooth muscle myoblast | 1.14e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
colon | 1.24e-33 | 9 |
intestine | 6.82e-30 | 17 |
large intestine | 1.07e-27 | 11 |
gastrointestinal system | 6.29e-21 | 25 |
smooth muscle tissue | 1.47e-20 | 15 |
subdivision of digestive tract | 2.09e-10 | 118 |
intestinal mucosa | 1.12e-09 | 4 |
wall of intestine | 1.12e-09 | 4 |
gastrointestinal system mucosa | 1.12e-09 | 4 |
gastrointestinal system epithelium | 1.12e-09 | 4 |
intestinal epithelium | 1.12e-09 | 4 |
digestive system | 1.51e-08 | 145 |
digestive tract | 1.51e-08 | 145 |
primitive gut | 1.51e-08 | 145 |
unilaminar epithelium | 1.95e-08 | 148 |
liver | 6.82e-08 | 19 |
digestive gland | 6.82e-08 | 19 |
liver bud | 6.82e-08 | 19 |
endoderm-derived structure | 8.84e-08 | 160 |
endoderm | 8.84e-08 | 160 |
presumptive endoderm | 8.84e-08 | 160 |
trunk mesenchyme | 3.50e-07 | 122 |
hepatic diverticulum | 6.09e-07 | 22 |
liver primordium | 6.09e-07 | 22 |