FFCP PHASE1:Hg19::chr8:2970547..2970561,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64478 | |EntrezGene=64478 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14026 | |HGNC=14026 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=323bp_to_ENST00000520561_5end | |association_with_transcript=323bp_to_ENST00000520561_5end | ||
|cluster_id=chr8:2970547..2970561,- | |||
|coexpression_cluster_id=C46 | |||
|description=CAGE_peak_8_at_CSMD1_5end | |description=CAGE_peak_8_at_CSMD1_5end | ||
|id=chr8:2970547..2970561,- | |id=chr8:2970547..2970561,- | ||
|ontology_enrichment_celltype=CL:0002139!5.49e-11!24;CL:0000115!1.96e-09!35;CL:0002543!4.64e-09!6;CL:0002618!2.33e-08!3;CL:0000071!7.82e-08!18;CL:0002546!7.82e-08!18;CL:0002078!2.97e-07!44 | |ontology_enrichment_celltype=CL:0002139!5.49e-11!24;CL:0000115!1.96e-09!35;CL:0002543!4.64e-09!6;CL:0002618!2.33e-08!3;CL:0000071!7.82e-08!18;CL:0002546!7.82e-08!18;CL:0002078!2.97e-07!44 | ||
|ontology_enrichment_celltype_v019=CL:0002139;4.11e-13;24!CL:0000115;8.60e-13;36!CL:0002144;2.59e-12;3!CL:0002078;8.37e-10;45!CL:0000213;1.05e-09;58!CL:0000215;1.05e-09;58!CL:0000071;2.51e-08;18!CL:0002188;6.55e-08;5!CL:0002544;8.48e-07;6!CL:0002138;8.48e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,3.31e-15,36;CL:0002139,3.78e-13,24;CL:0002144,2.31e-12,3;CL:0002078,2.74e-12,45;CL:0000213,1.16e-09,58;CL:0000215,1.16e-09,58;CL:0000071,2.51e-08,18;CL:0002546,2.51e-08,18;CL:0002188,7.49e-08,5;CL:0005020,7.58e-07,6;CL:0002138,7.58e-07,6;CL:0005022,7.58e-07,6;CL:0002544,8.97e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0007297;9.07e-18;2!CL:0002546;2.51e-08;18!CL:0005022;8.48e-07;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.73e-15!115;UBERON:0001986!7.82e-08!18;UBERON:0004638!7.82e-08!18;UBERON:0004852!7.82e-08!18;UBERON:0004177!1.45e-07!7;UBERON:0001301!2.50e-07!1;UBERON:0006834!8.02e-07!1 | |ontology_enrichment_uberon=UBERON:0007023!8.73e-15!115;UBERON:0001986!7.82e-08!18;UBERON:0004638!7.82e-08!18;UBERON:0004852!7.82e-08!18;UBERON:0004177!1.45e-07!7;UBERON:0001301!2.50e-07!1;UBERON:0006834!8.02e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0001301;5.05e-34;1!UBERON:0010523;2.59e-12;3!UBERON:0001915;2.59e-12;3!UBERON:0006947;2.59e-12;3!UBERON:0001982;2.59e-12;3!UBERON:0004054;2.59e-12;3!UBERON:0005904;1.44e-09;4!UBERON:0004638;2.51e-08;18!UBERON:0001986;2.51e-08;18!UBERON:0004852;2.51e-08;18!UBERON:0000487;5.57e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001301,5.05e-34,1;UBERON:0005103,2.19e-17,8;UBERON:0000083,2.19e-17,8;UBERON:0009201,2.19e-17,8;UBERON:0006553,2.19e-17,8;UBERON:0003074,2.19e-17,8;UBERON:0003060,2.19e-17,8;UBERON:0000080,1.41e-15,9;UBERON:0002120,1.41e-15,9;UBERON:0004875,1.41e-15,9;UBERON:0005721,1.41e-15,9;UBERON:0005754,1.41e-15,9;UBERON:0007297,1.41e-15,9;UBERON:0004876,6.11e-13,11;UBERON:0010523,2.31e-12,3;UBERON:0001915,2.31e-12,3;UBERON:0001982,2.31e-12,3;UBERON:0006947,2.59e-12,3;UBERON:0004054,2.59e-12,3;UBERON:0003887,6.00e-12,12;UBERON:0005904,1.44e-09,4;UBERON:0006555,3.27e-09,16;UBERON:0004819,3.27e-09,16;UBERON:0004638,2.51e-08,18;UBERON:0001986,2.51e-08,18;UBERON:0004852,2.51e-08,18;UBERON:0000058,6.59e-08,19;UBERON:0000487,5.57e-07,22 | |||
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|short_description=p8@CSMD1 | |short_description=p8@CSMD1 | ||
}} | }} |
Latest revision as of 22:05, 17 September 2015
Short description: | p8@CSMD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_CSMD1_5end |
Coexpression cluster: | C46_acute_Hodgkin_thymus_CD8_chronic_CD4_merkel |
Association with transcript: | 323bp_to_ENST00000520561_5end |
EntrezGene: | CSMD1 |
HGNC: | 14026 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 3.31e-15 | 36 |
endothelial cell of vascular tree | 3.78e-13 | 24 |
capillary endothelial cell | 2.31e-12 | 3 |
meso-epithelial cell | 2.74e-12 | 45 |
lining cell | 1.16e-09 | 58 |
barrier cell | 1.16e-09 | 58 |
blood vessel endothelial cell | 2.51e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.51e-08 | 18 |
glomerular endothelial cell | 7.49e-08 | 5 |
lymphangioblast | 7.58e-07 | 6 |
endothelial cell of lymphatic vessel | 7.58e-07 | 6 |
vascular lymphangioblast | 7.58e-07 | 6 |
aortic endothelial cell | 8.97e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
epididymis | 5.05e-34 | 1 |
mesonephric epithelium | 2.19e-17 | 8 |
mesonephric tubule | 2.19e-17 | 8 |
nephric duct | 2.19e-17 | 8 |
renal duct | 2.19e-17 | 8 |
mesonephric duct | 2.19e-17 | 8 |
pronephric duct | 2.19e-17 | 8 |
mesonephros | 1.41e-15 | 9 |
pronephros | 1.41e-15 | 9 |
nephrogenic cord | 1.41e-15 | 9 |
pronephric mesoderm | 1.41e-15 | 9 |
rostral part of nephrogenic cord | 1.41e-15 | 9 |
presumptive pronephric mesoderm | 1.41e-15 | 9 |
urogenital ridge | 6.11e-13 | 11 |
microcirculatory vessel | 2.31e-12 | 3 |
endothelium of capillary | 2.31e-12 | 3 |
capillary | 2.31e-12 | 3 |
male genital duct | 2.59e-12 | 3 |
internal male genitalia | 2.59e-12 | 3 |
intraembryonic coelom | 6.00e-12 | 12 |
duct of male reproductive system | 1.44e-09 | 4 |
excretory tube | 3.27e-09 | 16 |
kidney epithelium | 3.27e-09 | 16 |
blood vessel endothelium | 2.51e-08 | 18 |
endothelium | 2.51e-08 | 18 |
cardiovascular system endothelium | 2.51e-08 | 18 |
duct | 6.59e-08 | 19 |
simple squamous epithelium | 5.57e-07 | 22 |