FFCP PHASE1:Hg19::chr9:123165545..123165560,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55755 | |EntrezGene=55755 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18672 | |HGNC=18672 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=212bp_to_ENST00000480467_5end | |association_with_transcript=212bp_to_ENST00000480467_5end | ||
|cluster_id=chr9:123165545..123165560,- | |||
|coexpression_cluster_id=C125 | |||
|description=CAGE_peak_3_at_CDK5RAP2_5end | |description=CAGE_peak_3_at_CDK5RAP2_5end | ||
|id=chr9:123165545..123165560,- | |id=chr9:123165545..123165560,- | ||
|ontology_enrichment_celltype=CL:0000055!1.38e-24!180;CL:0000048!3.55e-19!430;CL:0002371!5.20e-19!591;CL:0000144!2.71e-18!625;CL:0000723!2.72e-18!436;CL:0000034!1.21e-17!444;CL:0000057!3.76e-17!75;CL:0000548!3.37e-16!679;CL:0000004!3.37e-16!679;CL:0000255!3.37e-16!679;CL:0002320!3.90e-16!365;CL:0000012!7.23e-16!682;CL:0000134!8.70e-13!358;CL:0000219!2.07e-12!390;CL:0000003!1.03e-11!722;CL:0000680!1.43e-07!57;CL:0000056!1.43e-07!57;CL:0000355!1.43e-07!57;CL:0000183!7.80e-07!59 | |ontology_enrichment_celltype=CL:0000055!1.38e-24!180;CL:0000048!3.55e-19!430;CL:0002371!5.20e-19!591;CL:0000144!2.71e-18!625;CL:0000723!2.72e-18!436;CL:0000034!1.21e-17!444;CL:0000057!3.76e-17!75;CL:0000548!3.37e-16!679;CL:0000004!3.37e-16!679;CL:0000255!3.37e-16!679;CL:0002320!3.90e-16!365;CL:0000012!7.23e-16!682;CL:0000134!8.70e-13!358;CL:0000219!2.07e-12!390;CL:0000003!1.03e-11!722;CL:0000680!1.43e-07!57;CL:0000056!1.43e-07!57;CL:0000355!1.43e-07!57;CL:0000183!7.80e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002564;2.34e-09;3!CL:0000680;8.48e-09;7!CL:0000746;1.89e-08;3!CL:0000723;3.05e-08;61!CL:0002521;3.81e-08;3!CL:0000594;6.15e-08;3!CL:0002540;1.15e-07;6!CL:0000034;1.30e-07;69!CL:0000134;2.68e-07;55!CL:0000138;3.06e-07;6!CL:0000048;5.32e-07;58!CL:0000188;6.07e-07;9!CL:0002602;9.11e-07;2!CL:0002569;9.86e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,2.36e-09,3;CL:0000746,2.51e-08,3;CL:0000513,2.51e-08,3;CL:0002521,3.83e-08,3;CL:0000594,4.91e-08,3;CL:0002540,1.14e-07,6;CL:0000058,2.37e-07,6;CL:0000138,2.37e-07,6;CL:0000048,3.12e-07,427;CL:0002320,3.33e-07,361;CL:0000188,5.46e-07,9;CL:0000723,6.09e-07,433;CL:0002602,8.91e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000513;1.89e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!2.46e-15!375;UBERON:0000914!1.01e-09!83;UBERON:0002329!1.01e-09!83;UBERON:0003077!1.01e-09!83;UBERON:0003059!1.01e-09!83;UBERON:0007282!1.01e-09!83;UBERON:0009618!1.01e-09!83;UBERON:0007285!1.01e-09!83;UBERON:0002204!1.16e-08!167;UBERON:0004290!6.15e-07!70;UBERON:0003102!7.79e-07!95 | |ontology_enrichment_uberon=UBERON:0002384!2.46e-15!375;UBERON:0000914!1.01e-09!83;UBERON:0002329!1.01e-09!83;UBERON:0003077!1.01e-09!83;UBERON:0003059!1.01e-09!83;UBERON:0007282!1.01e-09!83;UBERON:0009618!1.01e-09!83;UBERON:0007285!1.01e-09!83;UBERON:0002204!1.16e-08!167;UBERON:0004290!6.15e-07!70;UBERON:0003102!7.79e-07!95 | ||
|ontology_enrichment_uberon_v019=UBERON:0011135;1.90e-14;5!UBERON:0002216;1.90e-14;5!UBERON:0011134;1.90e-14;5!UBERON:0002209;1.90e-14;5!UBERON:0002213;1.90e-14;5!UBERON:0007844;1.90e-14;5!UBERON:0011138;1.90e-14;5!UBERON:0001130;1.90e-14;5!UBERON:0001066;1.90e-14;5!UBERON:0001468;1.90e-14;5!UBERON:0002242;2.34e-09;3!UBERON:0004905;7.94e-09;8!UBERON:0000982;7.94e-09;8!UBERON:0004770;7.94e-09;8!UBERON:0004765;9.25e-09;26!UBERON:0002190;3.81e-08;3!UBERON:0002072;4.37e-08;5!UBERON:0001013;6.96e-08;14!UBERON:0006876;1.51e-07;11!UBERON:0001134;6.02e-07;16!UBERON:0002036;6.02e-07;16!UBERON:0006444;9.11e-07;2!UBERON:0001995;9.11e-07;2!UBERON:0004715;9.11e-07;2!UBERON:0003422;9.86e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,1.87e-14,5;UBERON:0002216,1.87e-14,5;UBERON:0011134,1.87e-14,5;UBERON:0002209,1.87e-14,5;UBERON:0002213,1.87e-14,5;UBERON:0005856,1.87e-14,5;UBERON:0005866,1.87e-14,5;UBERON:0005863,1.87e-14,5;UBERON:0007844,1.87e-14,5;UBERON:0011138,1.87e-14,5;UBERON:0001130,1.87e-14,5;UBERON:0001066,1.87e-14,5;UBERON:0001468,1.87e-14,5;UBERON:0002242,2.36e-09,3;UBERON:0003068,2.36e-09,3;UBERON:0002328,2.36e-09,3;UBERON:0004880,2.36e-09,3;UBERON:0004905,7.87e-09,8;UBERON:0000982,7.87e-09,8;UBERON:0004770,7.87e-09,8;UBERON:0002190,3.83e-08,3;UBERON:0002072,4.16e-08,5;UBERON:0001013,5.16e-08,14;UBERON:0006876,1.13e-07,11;UBERON:0002384,3.25e-07,371;UBERON:0006444,8.91e-07,2;UBERON:0001995,8.91e-07,2;UBERON:0004715,8.91e-07,2 | |||
|phase1_expression=0.181678379270557,0,0.422863212287913,0,0.446961094427288,0,2.53299878168311,2.52687949370732,1.30592814099919,0,0,0,0.263766978228454,12.2528689430446,12.5931002776608,1.34465029290355,0,1.46062018077475,0,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23350366406548,0.619412741790207,0.863077176966451,0.768482119587302,0.236482229888585,0,1.29096936716765,1.35426486594342,0,0.545812300115692,0,0,0.320929027076094,0,0.329851300186716,0.797854630486527,0.426224750532694,0.290209238628584,1.70215567407342,0.622822248995575,0.251248665256743,0,0,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.01210257911091,2.30152611318355,1.80719576192283,12.0321098552613,6.66293987219789,2.3858578411533,0.973269740605272,0.0945348171640679,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0.354668382198357,0,0,0.49333509683432,3.11211035399766,0,0,1.96764655938411,1.72852777344,0.70296429550139,0,0.570471821544449,0.448346041655403,0,0,0.140450806702248,0.61246251376468,0.122834317311768,0.206651562351531,0,0,0,0.718618141816238,0.168336113954066,0.500474079487857,0.277064115484183,1.31693286264251,0,0.45071417671979,0.113432183160021,0,0.85422955527427,9.96079935449941,0.300091096084402,1.64884046781502,0,0.930584281657949,0,0.876933046450788,0.504867548488229,1.47279837827679,1.13152239773168,0.710019185033229,1.10827308050404,0.67824236924195,0,0,0,0,0,0,0,0.252320850875628,0,0,0,1.38134921352481,2.78620756819187,0,0,0,0,0,0,0,0,0,0,0,0,1.2347220339942,0,0,0,0,0,0,1.20097467208968,0,0,0,0,0.651616610620649,4.15973914111831,1.44331342025273,0.231860809950154,1.29149563659404,0,0,0,0,0.858486162094873,0,0,0.297262324577456,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0.063497894292169,0,0,1.71072446022705,0,0,0,0.112131084345361,0,0.1466765716419,0.258543431515556,21.4593867511129,0,0,0,14.6608203329421,4.25547396069835,7.45982101245078,0.285955987316295,1.08524321078289,2.46972101034231,0.325736184293735,0.355391948742546,2.37585561880029,0,0,0,0,0,0,0,1.14861935834114,0,0.723906533337896,18.9038216746353,1.07436577943937,0,0,0,0,0,0,0,0,0,0,0,0,41.1016497259119,17.5059682370887,6.23909554509392,0.207970861530807,0.178428988797162,0.473107245101804,0,4.51419149591578,0,1.03473071292505,0.664225598535437,1.65932251687533,0.260650843404249,8.2236486134351,0.343143423810856,0,0,0,0,0,0,0.496215615637554,0.153461973288062,0.561320188866147,0.256278298511402,0,0,1.48418066444991,0.308419387605311,1.42049380250502,0.657017248110473,0.519254429183621,1.51073491997947,0,0,0,0.34444334449382,0.182091168006717,0.524497659837696,0.451199612907412,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0.656029291399411,0.325378394664303,0.103041011647722,0,0,0,0,0,0,6.00789606747113,5.2191249406884,0,1.28904293841928,3.0453505721988,1.87498580315422,0.267096106940212,0,0,0,0,0.929691098594572,0,0,0,0,0,0,0.143124886741991,0,0.316379424718726,2.2875623270859,0.255897791311334,0,0.318203247925937,0,0.179872457583315,0,0.117812402345686,0,0,0,0.975267478179181,0,0,0.409499734223957,0.141405431953713,0,0,0,0,0.578775534266688,0,0.405820753925408,0.30982349809975,0,0,0.196498082026242,0,0.354761064070598,0.422215270595328,0.329294892959902,2.65631221636001,4.54915136318478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.5362711958732,0,0,0,0,0.102268682502155,0,0,0,0.179021174675609,0,0,0,3.33410970433911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0.335643173951685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51647791108371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0.19871461170299,0,0,0.160317640503067,0,0,0,0,0,0,0.248505071130865,0,0,0,1.32597682927218,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0.537862017998534,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0.855434189421647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,2.83584125485061,0.934853239388898,1.66441758450784,0.757612021100357,4.77979013329893,0,0.457680136793847,0.756154618816195,2.48699520932449,1.03498604992744,0.159296767163702,0.899606224327209,1.39736661188633,0.829412415681711,1.59505028734797,0,0,0,1.22061219961398,1.27294061441792,0.107410557042488,1.39210127963548,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,1.23520578864389,0,0,0,0.168942440653073,0,3.45430341731199,0.303859956177382,0,0,0,0,0,190.228231375379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,1.88751557356385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0.857440047187092,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0,1.65772931330429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470317296361523,0,0,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| ||
|short_description=p3@CDK5RAP2 | |short_description=p3@CDK5RAP2 | ||
}} | }} |
Latest revision as of 19:13, 24 September 2015
Short description: | p3@CDK5RAP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CDK5RAP2_5end |
Coexpression cluster: | C125_mucinous_alveolar_mesothelioma_Smooth_lung_CD14_Nucleus |
Association with transcript: | 212bp_to_ENST00000480467_5end |
EntrezGene: | CDK5RAP2 |
HGNC: | 18672 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 2.36e-09 | 3 |
cardiac muscle cell | 2.51e-08 | 3 |
cardiac muscle myoblast | 2.51e-08 | 3 |
subcutaneous fat cell | 3.83e-08 | 3 |
skeletal muscle satellite cell | 4.91e-08 | 3 |
mesenchymal stem cell of the bone marrow | 1.14e-07 | 6 |
chondroblast | 2.37e-07 | 6 |
chondrocyte | 2.37e-07 | 6 |
multi fate stem cell | 3.12e-07 | 427 |
connective tissue cell | 3.33e-07 | 361 |
cell of skeletal muscle | 5.46e-07 | 9 |
somatic stem cell | 6.09e-07 | 433 |
annulus pulposus cell | 8.91e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 1.87e-14 | 5 |
symphysis | 1.87e-14 | 5 |
nonsynovial joint | 1.87e-14 | 5 |
fibrous joint | 1.87e-14 | 5 |
cartilaginous joint | 1.87e-14 | 5 |
developing mesenchymal condensation | 1.87e-14 | 5 |
pre-cartilage condensation | 1.87e-14 | 5 |
cartilaginous condensation | 1.87e-14 | 5 |
cartilage element | 1.87e-14 | 5 |
post-cranial axial skeletal system | 1.87e-14 | 5 |
vertebral column | 1.87e-14 | 5 |
intervertebral disk | 1.87e-14 | 5 |
intervertebral joint | 1.87e-14 | 5 |
nucleus pulposus | 2.36e-09 | 3 |
axial mesoderm | 2.36e-09 | 3 |
notochord | 2.36e-09 | 3 |
chordamesoderm | 2.36e-09 | 3 |
articulation | 7.87e-09 | 8 |
skeletal joint | 7.87e-09 | 8 |
articular system | 7.87e-09 | 8 |
subcutaneous adipose tissue | 3.83e-08 | 3 |
hypodermis | 4.16e-08 | 5 |
adipose tissue | 5.16e-08 | 14 |
vasculature of organ | 1.13e-07 | 11 |
connective tissue | 3.25e-07 | 371 |
annulus fibrosus | 8.91e-07 | 2 |
fibrocartilage | 8.91e-07 | 2 |
annulus fibrosus disci intervertebralis | 8.91e-07 | 2 |