FFCP PHASE1:Hg19::chr2:216289851..216289877,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2335 | |EntrezGene=2335 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=3778 | |HGNC=3778 | ||
|TSSclassifier=strong | |||
|UniProt=P02751 | |UniProt=P02751 | ||
|association_with_transcript=59bp_to_AF312399_5end | |association_with_transcript=59bp_to_AF312399_5end | ||
|cluster_id=chr2:216289851..216289877,- | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_42_at_FN1_5end | |description=CAGE_peak_42_at_FN1_5end | ||
|id=chr2:216289851..216289877,- | |id=chr2:216289851..216289877,- | ||
|ontology_enrichment_celltype=CL:0000055!2.28e-31!180;CL:0000057!2.15e-24!75;CL:0002371!1.88e-14!591;CL:0000680!2.18e-13!57;CL:0000056!2.18e-13!57;CL:0000355!2.18e-13!57;CL:0000183!5.93e-13!59;CL:0000187!3.71e-12!54;CL:0000144!5.05e-12!625;CL:0002620!9.74e-10!23;CL:0000393!1.62e-09!60;CL:0000211!1.62e-09!60;CL:0000048!4.02e-09!430;CL:0000723!1.49e-08!436;CL:0002334!2.62e-08!12;CL:0000220!2.92e-08!246;CL:0000222!4.89e-08!119;CL:0000034!5.62e-08!444;CL:0002321!6.75e-08!248;CL:0000192!1.58e-07!42;CL:0000514!1.58e-07!42;CL:0000548!5.13e-07!679;CL:0000004!5.13e-07!679;CL:0000255!5.13e-07!679 | |ontology_enrichment_celltype=CL:0000055!2.28e-31!180;CL:0000057!2.15e-24!75;CL:0002371!1.88e-14!591;CL:0000680!2.18e-13!57;CL:0000056!2.18e-13!57;CL:0000355!2.18e-13!57;CL:0000183!5.93e-13!59;CL:0000187!3.71e-12!54;CL:0000144!5.05e-12!625;CL:0002620!9.74e-10!23;CL:0000393!1.62e-09!60;CL:0000211!1.62e-09!60;CL:0000048!4.02e-09!430;CL:0000723!1.49e-08!436;CL:0002334!2.62e-08!12;CL:0000220!2.92e-08!246;CL:0000222!4.89e-08!119;CL:0000034!5.62e-08!444;CL:0002321!6.75e-08!248;CL:0000192!1.58e-07!42;CL:0000514!1.58e-07!42;CL:0000548!5.13e-07!679;CL:0000004!5.13e-07!679;CL:0000255!5.13e-07!679 | ||
|ontology_enrichment_celltype_v019=CL:0000134;1.04e-12;55!CL:0000723;3.59e-12;61!CL:0000057;3.08e-11;73!CL:0000048;1.58e-10;58!CL:0002334;5.76e-10;12!CL:0002620;1.20e-09;23!CL:0002320;6.22e-09;188!CL:0000034;2.68e-08;69!CL:0000349;1.58e-07;19!CL:0000187;2.70e-07;55!CL:0000499;3.67e-07;28!CL:0002494;9.41e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.65e-28,76;CL:0000048,1.62e-18,427;CL:0000723,5.35e-18,433;CL:0000034,1.25e-16,441;CL:0000680,1.56e-13,58;CL:0000056,1.56e-13,58;CL:0000355,1.56e-13,58;CL:0000187,4.24e-12,55;CL:0002320,4.35e-10,361;CL:0002334,6.26e-10,12;CL:0000393,1.25e-09,61;CL:0000211,1.25e-09,61;CL:0002620,1.67e-09,23;CL:0000134,2.03e-08,354;CL:0000349,1.52e-07,19;CL:0000499,5.06e-07,28;CL:0000192,7.79e-07,43;CL:0000514,7.79e-07,43 | |||
|ontology_enrichment_development_v019=CL:0000355;1.84e-07;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!8.73e-18!143;UBERON:0000914!4.13e-17!83;UBERON:0002329!4.13e-17!83;UBERON:0003077!4.13e-17!83;UBERON:0003059!4.13e-17!83;UBERON:0007282!4.13e-17!83;UBERON:0009618!4.13e-17!83;UBERON:0007285!4.13e-17!83;UBERON:0004290!1.36e-15!70;UBERON:0000486!4.39e-14!82;UBERON:0001134!2.27e-12!61;UBERON:0002036!2.27e-12!61;UBERON:0003082!2.27e-12!61;UBERON:0002385!4.25e-12!63;UBERON:0001015!4.25e-12!63;UBERON:0000383!4.25e-12!63;UBERON:0002100!9.56e-12!216;UBERON:0003914!7.44e-11!118;UBERON:0004872!4.04e-10!84;UBERON:0000490!9.49e-10!138;UBERON:0002199!5.37e-09!45;UBERON:0002416!5.37e-09!45;UBERON:0002097!2.08e-08!40;UBERON:0002049!2.90e-08!79;UBERON:0007798!2.90e-08!79;UBERON:0003102!2.93e-08!95;UBERON:0004923!4.80e-08!57;UBERON:0000475!4.88e-08!365;UBERON:0001009!7.56e-08!113;UBERON:0004535!1.09e-07!110;UBERON:0000468!1.43e-07!659;UBERON:0001637!3.96e-07!42;UBERON:0003509!3.96e-07!42;UBERON:0004572!3.96e-07!42;UBERON:0003104!4.25e-07!238;UBERON:0009142!4.25e-07!238 | |ontology_enrichment_uberon=UBERON:0005256!8.73e-18!143;UBERON:0000914!4.13e-17!83;UBERON:0002329!4.13e-17!83;UBERON:0003077!4.13e-17!83;UBERON:0003059!4.13e-17!83;UBERON:0007282!4.13e-17!83;UBERON:0009618!4.13e-17!83;UBERON:0007285!4.13e-17!83;UBERON:0004290!1.36e-15!70;UBERON:0000486!4.39e-14!82;UBERON:0001134!2.27e-12!61;UBERON:0002036!2.27e-12!61;UBERON:0003082!2.27e-12!61;UBERON:0002385!4.25e-12!63;UBERON:0001015!4.25e-12!63;UBERON:0000383!4.25e-12!63;UBERON:0002100!9.56e-12!216;UBERON:0003914!7.44e-11!118;UBERON:0004872!4.04e-10!84;UBERON:0000490!9.49e-10!138;UBERON:0002199!5.37e-09!45;UBERON:0002416!5.37e-09!45;UBERON:0002097!2.08e-08!40;UBERON:0002049!2.90e-08!79;UBERON:0007798!2.90e-08!79;UBERON:0003102!2.93e-08!95;UBERON:0004923!4.80e-08!57;UBERON:0000475!4.88e-08!365;UBERON:0001009!7.56e-08!113;UBERON:0004535!1.09e-07!110;UBERON:0000468!1.43e-07!659;UBERON:0001637!3.96e-07!42;UBERON:0003509!3.96e-07!42;UBERON:0004572!3.96e-07!42;UBERON:0003104!4.25e-07!238;UBERON:0009142!4.25e-07!238 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.06e-08;198 | |||
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| ||
|short_description=p42@FN1 | |short_description=p42@FN1 | ||
}} | }} |
Latest revision as of 04:51, 20 September 2015
Short description: | p42@FN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_42_at_FN1_5end |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | 59bp_to_AF312399_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | P02751 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.65e-28 | 76 |
multi fate stem cell | 1.62e-18 | 427 |
somatic stem cell | 5.35e-18 | 433 |
stem cell | 1.25e-16 | 441 |
muscle precursor cell | 1.56e-13 | 58 |
myoblast | 1.56e-13 | 58 |
multi-potent skeletal muscle stem cell | 1.56e-13 | 58 |
muscle cell | 4.24e-12 | 55 |
connective tissue cell | 4.35e-10 | 361 |
preadipocyte | 6.26e-10 | 12 |
electrically responsive cell | 1.25e-09 | 61 |
electrically active cell | 1.25e-09 | 61 |
skin fibroblast | 1.67e-09 | 23 |
mesenchymal cell | 2.03e-08 | 354 |
extraembryonic cell | 1.52e-07 | 19 |
stromal cell | 5.06e-07 | 28 |
smooth muscle cell | 7.79e-07 | 43 |
smooth muscle myoblast | 7.79e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 2.67e-16 | 73 |
somite | 2.95e-16 | 71 |
presomitic mesoderm | 2.95e-16 | 71 |
presumptive segmental plate | 2.95e-16 | 71 |
dermomyotome | 2.95e-16 | 71 |
trunk paraxial mesoderm | 2.95e-16 | 71 |
paraxial mesoderm | 8.92e-16 | 72 |
presumptive paraxial mesoderm | 8.92e-16 | 72 |
epithelial vesicle | 4.41e-15 | 78 |
multilaminar epithelium | 3.23e-14 | 83 |
trunk mesenchyme | 6.71e-13 | 122 |
skeletal muscle tissue | 1.82e-12 | 62 |
striated muscle tissue | 1.82e-12 | 62 |
myotome | 1.82e-12 | 62 |
muscle tissue | 2.46e-12 | 64 |
musculature | 2.46e-12 | 64 |
musculature of body | 2.46e-12 | 64 |
mesenchyme | 1.51e-11 | 160 |
entire embryonic mesenchyme | 1.51e-11 | 160 |
connective tissue | 1.49e-10 | 371 |
integument | 9.20e-09 | 46 |
integumental system | 9.20e-09 | 46 |
mesoderm | 1.41e-08 | 315 |
mesoderm-derived structure | 1.41e-08 | 315 |
presumptive mesoderm | 1.41e-08 | 315 |
skin of body | 2.52e-08 | 41 |
unilaminar epithelium | 3.39e-08 | 148 |
organ component layer | 1.62e-07 | 66 |
splanchnic layer of lateral plate mesoderm | 1.72e-07 | 83 |
trunk | 1.95e-07 | 199 |