FFCP PHASE1:Hg19::chr2:166060382..166060411,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6328 | |EntrezGene=6328 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10590 | |HGNC=10590 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000409101_5end | |association_with_transcript=0bp_to_ENST00000409101_5end | ||
|cluster_id=chr2:166060382..166060411,- | |||
|coexpression_cluster_id=C2665 | |||
|description=CAGE_peak_4_at_SCN3A_5end | |description=CAGE_peak_4_at_SCN3A_5end | ||
|id=chr2:166060382..166060411,- | |id=chr2:166060382..166060411,- | ||
|ontology_enrichment_celltype=CL:0000236!4.80e-13!14;CL:0000945!2.60e-08!24;CL:0000826!2.60e-08!24 | |ontology_enrichment_celltype=CL:0000236!4.80e-13!14;CL:0000945!2.60e-08!24;CL:0000826!2.60e-08!24 | ||
|ontology_enrichment_celltype_v019=CL:0000236;1.88e-20;13!CL:0000945;1.80e-14;24!CL:1000306;1.02e-11;4!CL:0002547;1.02e-11;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,5.79e-23,14;CL:0000945,1.47e-14,24;CL:0000826,1.47e-14,24;CL:1000306,1.20e-11,4;CL:0002547,1.20e-11,4;CL:0000542,2.44e-07,53;CL:0000051,2.44e-07,53 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0003528;1.54e-22;34!UBERON:0002020;1.54e-22;34!UBERON:0002619;1.94e-21;22!UBERON:0001869;6.88e-21;32!UBERON:0001950;2.76e-20;20!UBERON:0001893;1.61e-19;34!UBERON:0000956;1.50e-18;25!UBERON:0000203;1.50e-18;25!UBERON:0002791;2.22e-18;32!UBERON:0000073;1.24e-15;53!UBERON:0002616;1.24e-15;53!UBERON:0002780;1.27e-15;41!UBERON:0001890;1.27e-15;41!UBERON:0001871;7.07e-14;6!UBERON:0001017;1.26e-12;75!UBERON:0004797;1.02e-11;4!UBERON:0000415;1.02e-11;4!UBERON:0007240;1.02e-11;4!UBERON:0005742;1.02e-11;4!UBERON:0005734;1.02e-11;4!UBERON:0004664;1.02e-11;4!UBERON:0004663;1.02e-11;4!UBERON:0000955;3.47e-11;68!UBERON:0000200;3.93e-11;6!UBERON:0001016;1.26e-10;83!UBERON:0000349;1.47e-09;5!UBERON:0000988;1.57e-08;3!UBERON:0002420;5.97e-08;9!UBERON:0007245;5.97e-08;9!UBERON:0010009;5.97e-08;9!UBERON:0010011;5.97e-08;9!UBERON:0000454;5.97e-08;9!UBERON:0000125;9.00e-08;9!UBERON:0002308;9.00e-08;9!UBERON:0000369;2.13e-07;4!UBERON:0002435;2.13e-07;4!UBERON:0000204;2.13e-07;4!UBERON:0002298;3.15e-07;6!UBERON:0002370;6.72e-07;2!UBERON:0005058;6.72e-07;2!UBERON:0009113;6.72e-07;2 | |||
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|short_description=p4@SCN3A | |short_description=p4@SCN3A | ||
}} | }} |
Latest revision as of 23:31, 17 September 2015
Short description: | p4@SCN3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SCN3A_5end |
Coexpression cluster: | C2665_occipital_parietal_normal_temporal_duodenum_somatostatinoma_putamen |
Association with transcript: | 0bp_to_ENST00000409101_5end |
EntrezGene: | SCN3A |
HGNC: | 10590 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 5.79e-23 | 14 |
lymphocyte of B lineage | 1.47e-14 | 24 |
pro-B cell | 1.47e-14 | 24 |
fibroblast of tunica adventitia of artery | 1.20e-11 | 4 |
fibroblast of the aortic adventitia | 1.20e-11 | 4 |
lymphocyte | 2.44e-07 | 53 |
common lymphoid progenitor | 2.44e-07 | 53 |