FFCP PHASE1:Hg19::chr21:47423457..47423466,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr21:47423457..47423466,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_at_chr21:47423457..47423466,+ | |description=CAGE_peak_at_chr21:47423457..47423466,+ | ||
|id=chr21:47423457..47423466,+ | |id=chr21:47423457..47423466,+ | ||
|ontology_enrichment_celltype=CL:0000055!5.53e-38!180;CL:0000057!6.25e-23!75;CL:0000183!4.39e-15!59;CL:0000680!1.75e-14!57;CL:0000056!1.75e-14!57;CL:0000355!1.75e-14!57;CL:0000187!1.84e-14!54;CL:0000393!1.03e-13!60;CL:0000211!1.03e-13!60;CL:0000048!5.64e-12!430;CL:0000192!6.75e-12!42;CL:0000514!6.75e-12!42;CL:0000723!2.06e-11!436;CL:0000034!2.74e-11!444;CL:0002620!6.37e-11!23;CL:0000499!1.44e-09!27;CL:0002371!3.07e-08!591;CL:0000327!3.62e-08!14;CL:0002570!4.63e-08!8;CL:0000359!2.28e-07!32;CL:0002334!6.69e-07!12 | |ontology_enrichment_celltype=CL:0000055!5.53e-38!180;CL:0000057!6.25e-23!75;CL:0000183!4.39e-15!59;CL:0000680!1.75e-14!57;CL:0000056!1.75e-14!57;CL:0000355!1.75e-14!57;CL:0000187!1.84e-14!54;CL:0000393!1.03e-13!60;CL:0000211!1.03e-13!60;CL:0000048!5.64e-12!430;CL:0000192!6.75e-12!42;CL:0000514!6.75e-12!42;CL:0000723!2.06e-11!436;CL:0000034!2.74e-11!444;CL:0002620!6.37e-11!23;CL:0000499!1.44e-09!27;CL:0002371!3.07e-08!591;CL:0000327!3.62e-08!14;CL:0002570!4.63e-08!8;CL:0000359!2.28e-07!32;CL:0002334!6.69e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002570;6.83e-17;8!CL:0000499;1.56e-13;28!CL:0000327;2.14e-09;15!CL:0000135;6.22e-08;3!CL:0000388;6.22e-08;3!CL:0002559;8.28e-08;5!CL:0000723;1.22e-07;61!CL:0002582;1.60e-07;3!CL:0002564;1.76e-07;3!CL:0000153;1.81e-07;9!CL:0000447;1.81e-07;9!CL:0000632;5.52e-07;3!CL:0000134;5.71e-07;55!CL:0002320;9.13e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0002570,6.28e-17,8;CL:0000499,1.01e-13,28;CL:0000057,5.17e-13,76;CL:0002320,1.19e-10,361;CL:0000048,1.75e-10,427;CL:0000723,4.38e-10,433;CL:0000034,1.43e-09,441;CL:0000327,1.96e-09,15;CL:0000134,3.62e-08,354;CL:0000135,5.62e-08,3;CL:0000388,5.62e-08,3;CL:0002559,7.82e-08,5;CL:0002564,1.05e-07,3;CL:0002582,1.37e-07,3;CL:0000153,1.40e-07,9;CL:0000447,1.40e-07,9;CL:0000632,7.22e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:17,6.64e-07,5;DOID:450,6.64e-07,5;DOID:66,6.64e-07,5;DOID:423,6.64e-07,5;DOID:0080000,6.64e-07,5;DOID:11722,6.64e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!6.82e-18!83;UBERON:0002329!6.82e-18!83;UBERON:0003077!6.82e-18!83;UBERON:0003059!6.82e-18!83;UBERON:0007282!6.82e-18!83;UBERON:0009618!6.82e-18!83;UBERON:0007285!6.82e-18!83;UBERON:0004290!4.64e-17!70;UBERON:0000486!1.81e-14!82;UBERON:0001134!1.38e-13!61;UBERON:0002036!1.38e-13!61;UBERON:0003082!1.38e-13!61;UBERON:0002385!1.16e-12!63;UBERON:0001015!1.16e-12!63;UBERON:0000383!1.16e-12!63;UBERON:0005256!2.08e-12!143;UBERON:0000475!1.42e-09!365;UBERON:0002199!9.67e-09!45;UBERON:0002416!9.67e-09!45;UBERON:0002100!1.35e-08!216;UBERON:0000481!2.15e-08!347;UBERON:0003102!4.85e-08!95;UBERON:0002097!9.00e-08!40;UBERON:0003104!5.44e-07!238;UBERON:0009142!5.44e-07!238 | |ontology_enrichment_uberon=UBERON:0000914!6.82e-18!83;UBERON:0002329!6.82e-18!83;UBERON:0003077!6.82e-18!83;UBERON:0003059!6.82e-18!83;UBERON:0007282!6.82e-18!83;UBERON:0009618!6.82e-18!83;UBERON:0007285!6.82e-18!83;UBERON:0004290!4.64e-17!70;UBERON:0000486!1.81e-14!82;UBERON:0001134!1.38e-13!61;UBERON:0002036!1.38e-13!61;UBERON:0003082!1.38e-13!61;UBERON:0002385!1.16e-12!63;UBERON:0001015!1.16e-12!63;UBERON:0000383!1.16e-12!63;UBERON:0005256!2.08e-12!143;UBERON:0000475!1.42e-09!365;UBERON:0002199!9.67e-09!45;UBERON:0002416!9.67e-09!45;UBERON:0002100!1.35e-08!216;UBERON:0000481!2.15e-08!347;UBERON:0003102!4.85e-08!95;UBERON:0002097!9.00e-08!40;UBERON:0003104!5.44e-07!238;UBERON:0009142!5.44e-07!238 | ||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.97e-11;14!UBERON:0007846;6.22e-08;3!UBERON:0000043;6.22e-08;3!UBERON:0007845;6.22e-08;3!UBERON:0002073;8.28e-08;5!UBERON:0002384;1.64e-07;198!UBERON:0002242;1.76e-07;3!UBERON:0002199;8.08e-07;46!UBERON:0002416;8.08e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001013,2.07e-11,14;UBERON:0002384,1.90e-10,371;UBERON:0002199,2.00e-09,46;UBERON:0002416,2.00e-09,46;UBERON:0007846,5.62e-08,3;UBERON:0000043,5.62e-08,3;UBERON:0007845,5.62e-08,3;UBERON:0002073,7.82e-08,5;UBERON:0005086,7.82e-08,5;UBERON:0002242,1.05e-07,3;UBERON:0003068,1.05e-07,3;UBERON:0002328,1.05e-07,3;UBERON:0004880,1.05e-07,3;UBERON:0003102,1.39e-07,99;UBERON:0003104,2.15e-07,160;UBERON:0009142,2.15e-07,160;UBERON:0005256,2.97e-07,122;UBERON:0002097,5.48e-07,41 | |||
|phase1_expression=0.726713517082227,1.71280419112787,0.845726424575827,1.0007329835313,0,0,0,0,2.08948502559871,0,0,0,0,0.866364470720326,0.662794751455832,1.34465029290355,0.602694528023977,1.46062018077475,0.487932798790507,0.246242116153576,0.408001382488506,0.940364164434263,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0.511450247374121,1.0843174571537,0.50133791063589,1.73815822752988,1.5905718941022,1.45990461090791,0.189069634328136,0.221729397462564,0.087834785693126,0.130979075497713,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0.12663051166458,0.264818361626438,1.43418310374407,0.354668382198357,0.560677600142307,0,0.74000264525148,0.311211035399766,0,0.817309515567294,1.36221684880438,0,0.234321431833797,1.24864030732128,0.570471821544449,2.09228152772521,0.352303495931295,0.323745888736263,0.842704840213491,0.61246251376468,0.61417158655884,1.54988671763648,1.18800285728205,1.23633464639278,0,2.15585442544872,0.673344455816265,0.250237039743928,0,0,0.919463387397059,0.600952235626387,0,0.538168907066586,1.92201649936711,1.90738711043606,1.50045548042201,1.13357782162283,0.257640540045629,0.744467425326359,0.843881661206331,0.487185025805993,0.757301322732344,1.56484827691909,2.10139873864455,1.77504796258307,0.806016785821122,0.339121184620975,0,0,0,0.121973706129595,0,0.348581828608555,0.310983165046111,0,0,0,9.64861407289328,1.38134921352481,2.78620756819187,5.0531563716871,0,0.168584690078102,0,0,0.217879444092406,0,0,0,0,0,1.40241773803446,2.8810180793198,1.47008711385542,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0,0,0.325808305310325,1.03993478527958,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0.063497894292169,0,0,1.71072446022705,0.719792448923265,0,0.285826432630578,0.448524337381443,0.43596006883328,0.66004457238855,0.258543431515556,10.7296933755565,5.071816515336,0.797814349754612,1.04007436911366,0.771622122786426,0,0.532844358032199,1.57275793023962,2.17048642156577,0,1.95441710576241,1.77695974371273,0.791951872933429,0,0,0,0,0,0,0.718874566474748,5.7430967917057,0,0.579125226670317,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,2.4538298343828,3.00102312635806,1.89885516589815,0.831883446123229,1.24900292158013,0.630809660135739,0.35142424497814,0.300946099727719,0,0,1.32845119707087,1.10621501125022,2.43274120510632,1.56640925970192,3.43143423810856,0,0,0,0,0,0.30239029332968,0.496215615637554,0.460385919864187,0.561320188866147,0.384417447767103,0.511707249066704,0.804269605718038,0,2.7757744884478,3.37367278094941,1.56041596426237,4.67328986265259,2.20799719073923,0,0,0,0.459257792658427,2.54927635209404,1.96686622439136,0,0,0,0,0,0,0,0,1.54227252690289,0,0.501689773854853,0,0,0,0,0,0,0,0,0.206082023295445,0.0915694648183434,0.082509499920588,0,0.650060246036521,1.6068392984416,1.45006077438183,0.616194468458578,0.767518373630648,0.413509717453592,0.537101224341368,1.30515024522806,0.596586391912706,2.49289699810865,0,0,0,0,0,3.1481234683064,0,0.308033580176089,0.532306030317022,0.869932992075073,0.37064843820784,0,0.372158369359667,0.316379424718726,1.14378116354295,0.255897791311334,0.855877976067841,0.318203247925937,0.78494864019923,0.359744915166629,1.37268514868027,0.235624804691373,0.202182481573316,0,0,0.975267478179181,1.21856744815642,0,1.36499911407986,1.83827061539827,0,0.551365343546124,0.66343897524122,0.438450885253763,2.89387767133344,1.31178950409327,0.202910376962704,0.30982349809975,0.563391205064483,0.573645408816206,0.785992328104969,0.35667105148125,0.354761064070598,1.05553817648832,1.97576935775941,0.75894634753143,1.04980416073495,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0.111443384277478,0,0.23874448473769,0,0,0.994147647766298,0,0.222617410045812,0,0,0.398495976502139,0.552567831062295,0,0,0,1.24415835064723,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0.221158519862449,0,0,0,0,0.307801034015188,0.113942055847001,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60515529459758,0,0,0,0,0,1.20990716048664,0,0.189559738885464,0,0,0,0,0,1.19472429772959,0.284609546029793,0,0,0,0,1.04836000945218,0.343972064943233,0,0,0,0.0969890164884194,0,0,0.137041924646751,0,0,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0.209205692624666,0,0.288950589901519,0,0,0,0,0,0.558564802544508,0.229160424011684,0,0,0,0,0.201550417460179,1.08089965062721,0,0,0,0,0,0,0,0,0.160753148465019,0.412618309791701,0.415440338029185,0,0,0.0607495566580247,0,0.236417121897595,0.209818352539992,0.105600336519406,0,0,0,0.662091970365432,0,1.62899880526114,0,0.653174720218818,0,0,0,0.226624183040251,0,1.32506888912221,0,0,0,0,0.320362237703084,0,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| ||
|short_description=p@chr21:47423457..47423466,+ | |short_description=p@chr21:47423457..47423466,+ | ||
}} | }} |
Latest revision as of 18:44, 28 July 2015
Short description: | p@chr21:47423457..47423466, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr21:47423457..47423466, + |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of adipose | 6.28e-17 | 8 |
stromal cell | 1.01e-13 | 28 |
fibroblast | 5.17e-13 | 76 |
connective tissue cell | 1.19e-10 | 361 |
multi fate stem cell | 1.75e-10 | 427 |
somatic stem cell | 4.38e-10 | 433 |
stem cell | 1.43e-09 | 441 |
extracellular matrix secreting cell | 1.96e-09 | 15 |
mesenchymal cell | 3.62e-08 | 354 |
fibrocyte | 5.62e-08 | 3 |
tendon cell | 5.62e-08 | 3 |
hair follicle cell | 7.82e-08 | 5 |
nucleus pulposus cell of intervertebral disc | 1.05e-07 | 3 |
visceral preadipocyte | 1.37e-07 | 3 |
GAG secreting cell | 1.40e-07 | 9 |
carbohydrate secreting cell | 1.40e-07 | 9 |
hepatic stellate cell | 7.22e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
adipose tissue | 2.07e-11 | 14 |
connective tissue | 1.90e-10 | 371 |
integument | 2.00e-09 | 46 |
integumental system | 2.00e-09 | 46 |
dense regular connective tissue | 5.62e-08 | 3 |
tendon | 5.62e-08 | 3 |
regular connective tissue | 5.62e-08 | 3 |
hair follicle | 7.82e-08 | 5 |
hair follicle placode | 7.82e-08 | 5 |
nucleus pulposus | 1.05e-07 | 3 |
axial mesoderm | 1.05e-07 | 3 |
notochord | 1.05e-07 | 3 |
chordamesoderm | 1.05e-07 | 3 |
surface structure | 1.39e-07 | 99 |
mesenchyme | 2.15e-07 | 160 |
entire embryonic mesenchyme | 2.15e-07 | 160 |
trunk mesenchyme | 2.97e-07 | 122 |
skin of body | 5.48e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 6.64e-07 | 5 |
myotonic disease | 6.64e-07 | 5 |
muscle tissue disease | 6.64e-07 | 5 |
myopathy | 6.64e-07 | 5 |
muscular disease | 6.64e-07 | 5 |
myotonic dystrophy | 6.64e-07 | 5 |