FFCP PHASE1:Hg19::chr20:42816206..42816211,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57158 | |EntrezGene=57158 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14202 | |HGNC=14202 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BR39,Q86VZ3 | |UniProt=Q9BR39,Q86VZ3 | ||
|association_with_transcript=6bp_to_ENST00000372980,NM_020433,NM_175913,uc002xli.1,uc002xlj.2_5end | |association_with_transcript=6bp_to_ENST00000372980,NM_020433,NM_175913,uc002xli.1,uc002xlj.2_5end | ||
|cluster_id=chr20:42816206..42816211,- | |||
|description=CAGE_peak_8_at_JPH2_5end | |description=CAGE_peak_8_at_JPH2_5end | ||
|id=chr20:42816206..42816211,- | |id=chr20:42816206..42816211,- | ||
|ontology_enrichment_celltype=CL:0000077!7.38e-08!19;CL:0000197!8.86e-08!6;CL:0000098!8.86e-08!6;CL:0002167!8.86e-08!6;CL:0000066!9.28e-08!254 | |ontology_enrichment_celltype=CL:0000077!7.38e-08!19;CL:0000197!8.86e-08!6;CL:0000098!8.86e-08!6;CL:0002167!8.86e-08!6;CL:0000066!9.28e-08!254 | ||
|ontology_enrichment_celltype_v019=CL:0000575;8.17e-37;2!CL:0002537;1.45e-15;5!CL:0002536;2.37e-10;2!CL:0002535;2.37e-10;2!CL:0000349;3.06e-09;19!CL:0002615;2.55e-07;3!CL:0000346;2.55e-07;3!CL:1000428;2.55e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,2.45e-36,2;CL:0002537,1.62e-15,5;CL:0002535,1.89e-10,2;CL:0002536,2.07e-10,2;CL:0000349,3.06e-09,19;CL:0000346,2.05e-07,3;CL:1000428,2.05e-07,3;CL:0002615,3.35e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;2.17e-15;5!DOID:450;2.17e-15;5!DOID:66;2.17e-15;5!DOID:423;2.17e-15;5!DOID:0080000;2.17e-15;5!DOID:11722;2.17e-15;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.17e-15,5;DOID:450,2.17e-15,5;DOID:66,2.17e-15,5;DOID:423,2.17e-15,5;DOID:0080000,2.17e-15,5;DOID:11722,2.17e-15,5 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.21e-10!14;UBERON:0000158!2.21e-10!14;UBERON:0000305!1.15e-07!7 | |ontology_enrichment_uberon=UBERON:0005631!2.21e-10!14;UBERON:0000158!2.21e-10!14;UBERON:0000305!1.15e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000305;6.11e-24;7!UBERON:0000964;5.63e-19;4!UBERON:0010409;5.63e-19;4!UBERON:0005631;5.55e-17;10!UBERON:0000158;5.55e-17;10!UBERON:0006955;2.37e-10;2!UBERON:0004801;2.37e-10;2!UBERON:0003102;4.36e-09;50!UBERON:0010313;3.62e-08;10!UBERON:0000478;1.97e-07;24!UBERON:0000412;2.55e-07;3!UBERON:0001992;2.55e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000305,6.12e-24,7;UBERON:0004871,4.82e-21,8;UBERON:0000964,9.72e-19,4;UBERON:0010409,9.72e-19,4;UBERON:0004348,9.72e-19,4;UBERON:0005427,9.72e-19,4;UBERON:0005631,2.53e-12,14;UBERON:0000158,2.53e-12,14;UBERON:0006955,1.89e-10,2;UBERON:0004801,1.89e-10,2;UBERON:0010313,4.50e-08,10;UBERON:0002342,4.50e-08,10;UBERON:0005062,4.50e-08,10;UBERON:0000478,1.97e-07,24;UBERON:0000412,2.05e-07,3;UBERON:0001992,2.05e-07,3;UBERON:0004923,6.42e-07,66 | |||
|phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0,0,0,0.436882744260345,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09288586487763,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,1.25572744982203,1.2813443329114,0,0.300091096084402,0,0.257640540045629,0.18611685633159,0.168776332241266,0.389748020644795,0,0.0920498986422993,0,0.710019185033229,0.201504196455281,0,0.193260853163297,0,0,0,0.132529768321485,0,0,0,0,1.56449532329816,0,0,0,0,0.118306800039844,0.168584690078102,0,0,0.217879444092406,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.402115889646523,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0,0,0,0.383382679165211,0,0,0,0.144119953416961,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.473107245101804,0.234282829985426,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,0,0.907170879989041,0,0.61384789315225,0,0,0.511707249066704,0.160853921143607,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0,0,0,0,0,0,0.193341436584244,0,0,0,0,0,0,0.445160178233687,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,1.92495971052672,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,2.07875276582847,0.614321404198464,0,0,0,0,0,0.19924798825107,0,0,0.20453736500431,0,0.933118762985422,0.0898683511473268,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0.0897576444097721,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489961987071888,1.39294730528644,0,0,0,0.0730893170861856,0,0,0,0,0,0,0,0.195551382734803,0.0801588202515337,0,0.599428828746391,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.134366944973453,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0.260994291965212,0.226705925512272,0.694567422971502,0.244736704506468,0.179088841081487,0,0,0.353378291891762,0,0.168942440653073,0,0.345430341731199,0.607719912354764,0,0,0,0,0.655219697692825,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0.558644917973244,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0.690359926060101,0,0,0.60511520611056,0,0,0.655087670040387,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0.171488009437418,0,0,0,0.111231401892069,0.078493092850514,0,0.840816489941367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9164274741762,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0.169927114687817,0,0,0,0,0,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0.448527450322454,0,0,0,0,0,0,0,0,0,0,0,0,0.244482888365733,0,0,0,0 | |phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0,0,0,0.436882744260345,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09288586487763,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,1.25572744982203,1.2813443329114,0,0.300091096084402,0,0.257640540045629,0.18611685633159,0.168776332241266,0.389748020644795,0,0.0920498986422993,0,0.710019185033229,0.201504196455281,0,0.193260853163297,0,0,0,0.132529768321485,0,0,0,0,1.56449532329816,0,0,0,0,0.118306800039844,0.168584690078102,0,0,0.217879444092406,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.402115889646523,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0,0,0,0.383382679165211,0,0,0,0.144119953416961,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.473107245101804,0.234282829985426,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,0,0.907170879989041,0,0.61384789315225,0,0,0.511707249066704,0.160853921143607,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0,0,0,0,0,0,0.193341436584244,0,0,0,0,0,0,0.445160178233687,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,1.92495971052672,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,2.07875276582847,0.614321404198464,0,0,0,0,0,0.19924798825107,0,0,0.20453736500431,0,0.933118762985422,0.0898683511473268,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0.0897576444097721,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489961987071888,1.39294730528644,0,0,0,0.0730893170861856,0,0,0,0,0,0,0,0.195551382734803,0.0801588202515337,0,0.599428828746391,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.134366944973453,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0.260994291965212,0.226705925512272,0.694567422971502,0.244736704506468,0.179088841081487,0,0,0.353378291891762,0,0.168942440653073,0,0.345430341731199,0.607719912354764,0,0,0,0,0.655219697692825,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0.558644917973244,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0.690359926060101,0,0,0.60511520611056,0,0,0.655087670040387,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0.171488009437418,0,0,0,0.111231401892069,0.078493092850514,0,0.840816489941367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9164274741762,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0.169927114687817,0,0,0,0,0,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0.448527450322454,0,0,0,0,0,0,0,0,0,0,0,0,0.244482888365733,0,0,0,0 | ||
|short_description=p8@JPH2 | |short_description=p8@JPH2 | ||
}} | }} |
Latest revision as of 07:33, 16 September 2015
Short description: | p8@JPH2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_JPH2_5end |
Coexpression cluster: | NA |
Association with transcript: | 6bp_to_ENST00000372980, NM_020433, NM_175913, uc002xli.1, uc002xlj.2_5end |
EntrezGene: | JPH2 |
HGNC: | 14202 |
UniProt: | Q9BR39Q86VZ3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 2.45e-36 | 2 |
amnion mesenchymal stem cell | 1.62e-15 | 5 |
epithelial cell of cervix | 1.89e-10 | 2 |
amniotic epithelial cell | 2.07e-10 | 2 |
extraembryonic cell | 3.06e-09 | 19 |
hair follicle dermal papilla cell | 2.05e-07 | 3 |
stem cell of epidermis | 2.05e-07 | 3 |
adipocyte of omentum tissue | 3.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
amnion | 6.12e-24 | 7 |
somatic layer of lateral plate mesoderm | 4.82e-21 | 8 |
cornea | 9.72e-19 | 4 |
eye surface | 9.72e-19 | 4 |
optic eminence | 9.72e-19 | 4 |
corneal primordium | 9.72e-19 | 4 |
extraembryonic membrane | 2.53e-12 | 14 |
membranous layer | 2.53e-12 | 14 |
uterine epithelium | 1.89e-10 | 2 |
cervix epithelium | 1.89e-10 | 2 |
neural crest-derived structure | 4.50e-08 | 10 |
neural crest | 4.50e-08 | 10 |
neural fold | 4.50e-08 | 10 |
extraembryonic structure | 1.97e-07 | 24 |
dermal papilla | 2.05e-07 | 3 |
papillary layer of dermis | 2.05e-07 | 3 |
organ component layer | 6.42e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.17e-15 | 5 |
myotonic disease | 2.17e-15 | 5 |
muscle tissue disease | 2.17e-15 | 5 |
myopathy | 2.17e-15 | 5 |
muscular disease | 2.17e-15 | 5 |
myotonic dystrophy | 2.17e-15 | 5 |