FFCP PHASE1:Hg19::chr6:25442306..25442342,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:25442306..25442342,+ | |||
|coexpression_cluster_id=C476 | |||
|description=CAGE_peak_at_chr6:25442306..25442342,+ | |description=CAGE_peak_at_chr6:25442306..25442342,+ | ||
|id=chr6:25442306..25442342,+ | |id=chr6:25442306..25442342,+ | ||
|ontology_enrichment_celltype=CL:0000625!4.63e-30!11;CL:0000791!3.11e-26!18;CL:0000789!3.11e-26!18;CL:0002420!3.11e-26!18;CL:0002419!3.11e-26!18;CL:0000790!3.11e-26!18;CL:0000084!1.25e-25!25;CL:0000827!1.25e-25!25;CL:0000842!3.99e-13!3;CL:0000838!1.04e-12!52;CL:0000542!2.07e-12!53;CL:0000051!2.07e-12!53;CL:0000224!5.84e-10!4;CL:0000080!8.94e-07!6 | |ontology_enrichment_celltype=CL:0000625!4.63e-30!11;CL:0000791!3.11e-26!18;CL:0000789!3.11e-26!18;CL:0002420!3.11e-26!18;CL:0002419!3.11e-26!18;CL:0000790!3.11e-26!18;CL:0000084!1.25e-25!25;CL:0000827!1.25e-25!25;CL:0000842!3.99e-13!3;CL:0000838!1.04e-12!52;CL:0000542!2.07e-12!53;CL:0000051!2.07e-12!53;CL:0000224!5.84e-10!4;CL:0000080!8.94e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000625;4.83e-14;11!CL:0000084;8.10e-11;25!CL:0000791;8.08e-09;18!CL:0000789;8.08e-09;18!CL:0002419;8.08e-09;18!CL:0000226;9.11e-07;3!CL:0000842;9.11e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000625,4.42e-14,11;CL:0000084,8.31e-11,25;CL:0000827,8.31e-11,25;CL:0000791,7.65e-09,18;CL:0000789,7.65e-09,18;CL:0002420,7.65e-09,18;CL:0002419,7.65e-09,18;CL:0000790,7.65e-09,18;CL:0000226,9.12e-07,3;CL:0000842,9.12e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;8.08e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!1.47e-10!4;UBERON:0005058!1.47e-10!4;UBERON:0009113!1.47e-10!4;UBERON:0003295!1.47e-10!4;UBERON:0005562!1.47e-10!4;UBERON:0004177!4.05e-10!7;UBERON:0000178!1.55e-09!15;UBERON:0000179!1.55e-09!15;UBERON:0000463!1.55e-09!15;UBERON:0003351!3.65e-07!6;UBERON:0001042!4.16e-07!10;UBERON:0009145!4.16e-07!10;UBERON:0000974!4.73e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.11e-34;2!UBERON:0005058;1.11e-34;2!UBERON:0009113;1.11e-34;2!UBERON:0004177;1.61e-14;5!UBERON:0005057;1.61e-14;5!UBERON:0002114;9.11e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.79e-18,4;UBERON:0005058,6.79e-18,4;UBERON:0009113,6.79e-18,4;UBERON:0003295,6.79e-18,4;UBERON:0005562,6.79e-18,4;UBERON:0003351,2.91e-12,6;UBERON:0004177,1.21e-10,7;UBERON:0005057,1.21e-10,7;UBERON:0000974,1.02e-07,10;UBERON:0003408,1.02e-07,10;UBERON:0001042,1.02e-07,10;UBERON:0009145,1.02e-07,10;UBERON:0006562,4.30e-07,11;UBERON:0009722,4.30e-07,11;UBERON:0007690,4.30e-07,11;UBERON:0002114,7.70e-07,2 | |||
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| ||
|short_description=p@chr6:25442306..25442342,+ | |short_description=p@chr6:25442306..25442342,+ | ||
}} | }} |
Latest revision as of 22:52, 30 July 2015
Short description: | p@chr6:25442306..25442342, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:25442306..25442342, + |
Coexpression cluster: | C476_thymus_acute_Hodgkin_CD4_CD8_chronic_vein |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 4.42e-14 | 11 |
T cell | 8.31e-11 | 25 |
pro-T cell | 8.31e-11 | 25 |
mature alpha-beta T cell | 7.65e-09 | 18 |
alpha-beta T cell | 7.65e-09 | 18 |
immature T cell | 7.65e-09 | 18 |
mature T cell | 7.65e-09 | 18 |
immature alpha-beta T cell | 7.65e-09 | 18 |
single nucleate cell | 9.12e-07 | 3 |
mononuclear cell | 9.12e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
thymus | 6.79e-18 | 4 |
hemolymphoid system gland | 6.79e-18 | 4 |
thymic region | 6.79e-18 | 4 |
pharyngeal gland | 6.79e-18 | 4 |
thymus primordium | 6.79e-18 | 4 |
pharyngeal epithelium | 2.91e-12 | 6 |
hemopoietic organ | 1.21e-10 | 7 |
immune organ | 1.21e-10 | 7 |
neck | 1.02e-07 | 10 |
gland of gut | 1.02e-07 | 10 |
chordate pharynx | 1.02e-07 | 10 |
pharyngeal region of foregut | 1.02e-07 | 10 |
pharynx | 4.30e-07 | 11 |
entire pharyngeal arch endoderm | 4.30e-07 | 11 |
early pharyngeal endoderm | 4.30e-07 | 11 |
duodenum | 7.70e-07 | 2 |