FFCP PHASE1:Hg19::chr6:138820555..138820597,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57224 | |EntrezGene=57224 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21021 | |HGNC=21021 | ||
|TSSclassifier=strong | |||
|UniProt=E2QRJ1 | |UniProt=E2QRJ1 | ||
|association_with_transcript=0bp_to_NM_001144060,uc003qhy.2,uc011edp.1_5end | |association_with_transcript=0bp_to_NM_001144060,uc003qhy.2,uc011edp.1_5end | ||
|cluster_id=chr6:138820555..138820597,- | |||
|description=CAGE_peak_1_at_NHSL1_5end | |description=CAGE_peak_1_at_NHSL1_5end | ||
|id=chr6:138820555..138820597,- | |id=chr6:138820555..138820597,- | ||
|ontology_enrichment_celltype=CL:0000223!6.07e-12!59;CL:0002076!5.11e-08!43 | |ontology_enrichment_celltype=CL:0000223!6.07e-12!59;CL:0002076!5.11e-08!43 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.25e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,2.43e-11,58;CL:0000182,1.25e-07,12;CL:0000066,1.37e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0003104;3.44e-09;31!UBERON:0009497;3.04e-08;13!UBERON:0004161;4.17e-08;11!CL:0000223;6.85e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004921!2.23e-09!129;UBERON:0004185!2.23e-09!129;UBERON:0000466!1.96e-08!126;UBERON:0005172!2.66e-08!55;UBERON:0005173!2.66e-08!55;UBERON:0002365!4.94e-08!31;UBERON:0002330!4.94e-08!31;UBERON:0005177!1.09e-07!107;UBERON:0001007!1.60e-07!155;UBERON:0001555!1.60e-07!155;UBERON:0007026!1.60e-07!155;UBERON:0004119!3.73e-07!169;UBERON:0000925!3.73e-07!169;UBERON:0006595!3.73e-07!169;UBERON:0002417!4.58e-07!61;UBERON:0000916!4.58e-07!61;UBERON:0005409!6.87e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.06e-12;22!UBERON:0004921;1.20e-11;33!UBERON:0000160;1.73e-11;17!UBERON:0002365;2.06e-10;31!UBERON:0002330;2.06e-10;31!UBERON:0000059;1.00e-07;11!UBERON:0002423;2.89e-07;25!UBERON:0004907;3.13e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,4.43e-12,118;UBERON:0000160,1.78e-11,17;UBERON:0005409,1.15e-10,25;UBERON:0002365,1.44e-10,31;UBERON:0002330,1.44e-10,31;UBERON:0001007,1.40e-08,145;UBERON:0001555,1.40e-08,145;UBERON:0007026,1.40e-08,145;UBERON:0009854,2.65e-08,23;UBERON:0004119,4.40e-08,160;UBERON:0000925,4.40e-08,160;UBERON:0006595,4.40e-08,160;UBERON:0009856,6.33e-08,26;UBERON:0005177,7.83e-08,101;UBERON:0000059,1.11e-07,11;UBERON:0005172,1.28e-07,54;UBERON:0005173,1.28e-07,54;UBERON:0001041,1.34e-07,87;UBERON:0008835,1.87e-07,22;UBERON:0003894,1.87e-07,22;UBERON:0009497,2.71e-07,25;UBERON:0000015,2.71e-07,25;UBERON:0002423,2.71e-07,25;UBERON:0006235,2.71e-07,25;UBERON:0004161,2.71e-07,25;UBERON:0004907,3.66e-07,5;UBERON:0007499,4.00e-07,25;UBERON:0011216,5.10e-07,223;UBERON:0002417,7.51e-07,60;UBERON:0000916,7.51e-07,60 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,1.22866968250754,0.697801167972428,0,0,0,0,0,0,0,0,2.83178433576612,0.408001382488506,8.77673220138646,2.86235987131057,1.77936752594749,3.38965126905968,11.2327706449488,13.1360943119913,14.0892298551486,0,0,0,0.919421224478927,0.90361775633475,4.43704812200145,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.567208902984407,0.221729397462564,0.175669571386252,3.86388272718252,15.3004021082868,7.04490441290416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05265836499774,0.496971951695318,0,0,0.286836620748814,0,0,0,0,0,0,0,1.05950199351452,0,0.234321431833797,0,0,0,0.352303495931295,0.161872944368132,0,0,0,0.309977343527296,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0.213557388818567,0,0,0.103052529238439,3.34932702059318,2.04728541964749,1.18143432568886,1.16924406193438,0,0.0920498986422993,0.161646056818812,0,0.10075209822764,0,0.193260853163297,0.272746120590835,0.286804595389004,0.853815942907168,1.19276791489337,1.16193942869518,0.829288440122964,1.51392510525377,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,54.5046649733873,10.8110993834539,30.1302852407516,0,14.7586126251736,0.343135620597051,12.9505336782178,15.7362454560667,3.71957197923034,1.20364978706088,1.3032332212413,0,0,1.04337364477569,3.05262605013136,0,0,0,0,0,0,0,0,0,0.335964256397719,2.1266264586358,0,2.61570544662566,2.30029607499127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80980402060889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0.144781306667579,0,0,2.80212859983818,0,0,0,0.508189248444927,0,0,0.335032530668698,0,0,0,0,0,0,0.271265023699736,0,0.356857977594324,0.473107245101804,0.35142424497814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,2.60885354589706,1.12264037773229,0,1.02341449813341,0,0,0,0,0,0,0,3.14234568938218,0,1.38121483403844,0.68888668898764,0.364182336013434,0.393373244878272,4.06079651616671,0.693138033939733,2.35304930753057,1.46139224653261,0.422206515571503,0,0,0,0,0.541892875087706,0,11.9791848331168,5.81753206250107,0.895499018888713,0,0,0,0,0.325378394664303,21.535571434374,0,0,4.01985876597321,5.20048196829217,0,0.870036464629098,0,0,0,0.429680979473094,0,0,2.04773681987496,3.63626813794152,1.72971060628596,0.127612712494584,1.51736671283325,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294747123039363,0,0,0,0,0,2.79947776195986,3.84888450902048,3.35151137767894,1.08890984861323,24.9481072058465,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0,0.557409525377156,13.2727675938329,2.48996451719449,0,0,0.957526850661834,19.4739696105972,7.79092656658933,0,0,0,0,0,0,0.403599414382095,0.425846237690326,0,0,0,0,2.54004524022652,0,0,0,0.33307196799782,0,6.73705945469591,0,0,4.1234052182667,0,0,0,0,0,0,0,0,2.74463030566391,0.19924798825107,6.63081397274754,57.9445320064835,2.76125442755818,2.8309505256046,0,0,5.9076987642951,0.511572370226872,0,0,0,0,0,0,0,0,0,0.910347586283997,0,0,0.344743373241465,4.37406920074882,1.56262495439963,0,0,0,0,0,0,0.435753854075961,0.697118721393016,1.00035336054936,0,0,0.0897576444097721,0.108647371922008,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,1.13082457147153,45.4416143458391,26.8720721391196,55.9936383306137,25.6632660872123,85.1015639313385,75.8682585131528,64.8460306428878,0.876214728748802,0,0.468528891450678,2.18945747058799,0.19566461893209,0,2.36750641709634,13.308978765353,0.91821828489147,0,9.16972858428404,2.28114021073944,0,0,0,0,6.26141001265544,0.693373365065693,3.29763502836749,0,0,10.4836000945218,0,0,0,0,0.290967049465258,0,0,0,0,0,0.195551382734803,0,3.84215390530835,0,13.1122279610236,0.114536596165916,43.413534459077,0,0,0,0,0,0,0,0,0,0,0,12.3557056511278,0,0,0,0.199679000498991,0,0,0,0,11.6495949527454,55.5421435265927,54.0648030980452,56.147152030536,33.5637711965293,22.6924529936302,0,0,2.08979093004525,2.61324929534744,0,1.5748172408605,0,0.121499113316049,0,14.7366672649501,11.1203726846196,0,2.15144807199414,0,0,0,0,0,0,0,0,0.082092520749339,0,0,21.250073883322,6.62534444561107,0.129282956361551,0.13223260174269,7.52782086691049,0,0,0.157204305099666,0,0,0,0,0.638341257770182,0,0,0,0,1.41348686625211,0,0.122026264901963,0,0,1.77486482458964,1.05563885000352,18.4003684465187,0,0,0,0,0,0.579684114443301,0.447764408660622,1.16856654923612,0.554805861502613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0.343395705182793,2.69399591012735,0,0,0,6.7858515910955,0,0,0,0,0,0,0,0,0,3.8436227788192,0,0,0,0,0,0,15.070053046935,0,4.01493034381391,0,1.49368421571797,3.78872955253794,0,0,2.51783113895,1.86623178009892,0.383683113910955,0,1.57265941855896,0,0,0.212574920101683,1.11542187833102,0,0,4.02194899506392,0,0.352675943690684,0,0.128458450192919,0,0.159633859057151,0,0.252071696221718,0,0.322951291263702,0,0,0,0,0,0,0,0.198916222116275,0,0,2.34454203369928,0,0,1.47856086217045,0,0,0,0,0.546974809018219,7.12735096914337,0,0,0,3.21421101526972,17.15046983316,0,0.91064876540519,0.0887023701626388,0.806637912890455,0.514464028312255,0,0,0,0,0.078493092850514,0,17.0966019621411,7.30526976407596,1.07963795609311,1.43325506366115,0.428859265059938,22.4379328660472,0,0,1.60342272946051,1.45051314914126,0.17071847709395,0,2.58136415292167,0,0,0,0.4582137370881,0.31020638566432,0,0.782988022584546,9.71687312790905,0,0,0,0,3.88568794447312,0,0,0,37.6110453189737,11.2139327080338,1.96251696636676,106.886208979503,33.8767318781134,0,0,0,0.196308467114945,0.594092800654172,0.8453114551668,2.88876094969289,0,0.128915775947154,0.0999411559249289,0,0,0,1.46067277649303,4.12856355064087,0.286679166302903,0.315543124386369,0.0679914901909147,0.436350690340377,31.741610430924,0,0,0,0.504665699340316,34.4186551685641,0,8.66905052806845,24.5840012844316,1.28652859348783,5.0141507858475,0.909344378618873,0.535928260312357,0,0,0.213233981900981,0,0.0645889098360061,0,0,0.0636471582781649,0,1.74173398317569,0,0.740872583160463,1.29099969706817,0,0,0,0,4.31160970111617,2.34640942403454,0.244482888365733,0,0,0,0.320568492303233 | |phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,1.22866968250754,0.697801167972428,0,0,0,0,0,0,0,0,2.83178433576612,0.408001382488506,8.77673220138646,2.86235987131057,1.77936752594749,3.38965126905968,11.2327706449488,13.1360943119913,14.0892298551486,0,0,0,0.919421224478927,0.90361775633475,4.43704812200145,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.567208902984407,0.221729397462564,0.175669571386252,3.86388272718252,15.3004021082868,7.04490441290416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05265836499774,0.496971951695318,0,0,0.286836620748814,0,0,0,0,0,0,0,1.05950199351452,0,0.234321431833797,0,0,0,0.352303495931295,0.161872944368132,0,0,0,0.309977343527296,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0.213557388818567,0,0,0.103052529238439,3.34932702059318,2.04728541964749,1.18143432568886,1.16924406193438,0,0.0920498986422993,0.161646056818812,0,0.10075209822764,0,0.193260853163297,0.272746120590835,0.286804595389004,0.853815942907168,1.19276791489337,1.16193942869518,0.829288440122964,1.51392510525377,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,54.5046649733873,10.8110993834539,30.1302852407516,0,14.7586126251736,0.343135620597051,12.9505336782178,15.7362454560667,3.71957197923034,1.20364978706088,1.3032332212413,0,0,1.04337364477569,3.05262605013136,0,0,0,0,0,0,0,0,0,0.335964256397719,2.1266264586358,0,2.61570544662566,2.30029607499127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80980402060889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0.144781306667579,0,0,2.80212859983818,0,0,0,0.508189248444927,0,0,0.335032530668698,0,0,0,0,0,0,0.271265023699736,0,0.356857977594324,0.473107245101804,0.35142424497814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,2.60885354589706,1.12264037773229,0,1.02341449813341,0,0,0,0,0,0,0,3.14234568938218,0,1.38121483403844,0.68888668898764,0.364182336013434,0.393373244878272,4.06079651616671,0.693138033939733,2.35304930753057,1.46139224653261,0.422206515571503,0,0,0,0,0.541892875087706,0,11.9791848331168,5.81753206250107,0.895499018888713,0,0,0,0,0.325378394664303,21.535571434374,0,0,4.01985876597321,5.20048196829217,0,0.870036464629098,0,0,0,0.429680979473094,0,0,2.04773681987496,3.63626813794152,1.72971060628596,0.127612712494584,1.51736671283325,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294747123039363,0,0,0,0,0,2.79947776195986,3.84888450902048,3.35151137767894,1.08890984861323,24.9481072058465,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0,0.557409525377156,13.2727675938329,2.48996451719449,0,0,0.957526850661834,19.4739696105972,7.79092656658933,0,0,0,0,0,0,0.403599414382095,0.425846237690326,0,0,0,0,2.54004524022652,0,0,0,0.33307196799782,0,6.73705945469591,0,0,4.1234052182667,0,0,0,0,0,0,0,0,2.74463030566391,0.19924798825107,6.63081397274754,57.9445320064835,2.76125442755818,2.8309505256046,0,0,5.9076987642951,0.511572370226872,0,0,0,0,0,0,0,0,0,0.910347586283997,0,0,0.344743373241465,4.37406920074882,1.56262495439963,0,0,0,0,0,0,0.435753854075961,0.697118721393016,1.00035336054936,0,0,0.0897576444097721,0.108647371922008,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,1.13082457147153,45.4416143458391,26.8720721391196,55.9936383306137,25.6632660872123,85.1015639313385,75.8682585131528,64.8460306428878,0.876214728748802,0,0.468528891450678,2.18945747058799,0.19566461893209,0,2.36750641709634,13.308978765353,0.91821828489147,0,9.16972858428404,2.28114021073944,0,0,0,0,6.26141001265544,0.693373365065693,3.29763502836749,0,0,10.4836000945218,0,0,0,0,0.290967049465258,0,0,0,0,0,0.195551382734803,0,3.84215390530835,0,13.1122279610236,0.114536596165916,43.413534459077,0,0,0,0,0,0,0,0,0,0,0,12.3557056511278,0,0,0,0.199679000498991,0,0,0,0,11.6495949527454,55.5421435265927,54.0648030980452,56.147152030536,33.5637711965293,22.6924529936302,0,0,2.08979093004525,2.61324929534744,0,1.5748172408605,0,0.121499113316049,0,14.7366672649501,11.1203726846196,0,2.15144807199414,0,0,0,0,0,0,0,0,0.082092520749339,0,0,21.250073883322,6.62534444561107,0.129282956361551,0.13223260174269,7.52782086691049,0,0,0.157204305099666,0,0,0,0,0.638341257770182,0,0,0,0,1.41348686625211,0,0.122026264901963,0,0,1.77486482458964,1.05563885000352,18.4003684465187,0,0,0,0,0,0.579684114443301,0.447764408660622,1.16856654923612,0.554805861502613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0.343395705182793,2.69399591012735,0,0,0,6.7858515910955,0,0,0,0,0,0,0,0,0,3.8436227788192,0,0,0,0,0,0,15.070053046935,0,4.01493034381391,0,1.49368421571797,3.78872955253794,0,0,2.51783113895,1.86623178009892,0.383683113910955,0,1.57265941855896,0,0,0.212574920101683,1.11542187833102,0,0,4.02194899506392,0,0.352675943690684,0,0.128458450192919,0,0.159633859057151,0,0.252071696221718,0,0.322951291263702,0,0,0,0,0,0,0,0.198916222116275,0,0,2.34454203369928,0,0,1.47856086217045,0,0,0,0,0.546974809018219,7.12735096914337,0,0,0,3.21421101526972,17.15046983316,0,0.91064876540519,0.0887023701626388,0.806637912890455,0.514464028312255,0,0,0,0,0.078493092850514,0,17.0966019621411,7.30526976407596,1.07963795609311,1.43325506366115,0.428859265059938,22.4379328660472,0,0,1.60342272946051,1.45051314914126,0.17071847709395,0,2.58136415292167,0,0,0,0.4582137370881,0.31020638566432,0,0.782988022584546,9.71687312790905,0,0,0,0,3.88568794447312,0,0,0,37.6110453189737,11.2139327080338,1.96251696636676,106.886208979503,33.8767318781134,0,0,0,0.196308467114945,0.594092800654172,0.8453114551668,2.88876094969289,0,0.128915775947154,0.0999411559249289,0,0,0,1.46067277649303,4.12856355064087,0.286679166302903,0.315543124386369,0.0679914901909147,0.436350690340377,31.741610430924,0,0,0,0.504665699340316,34.4186551685641,0,8.66905052806845,24.5840012844316,1.28652859348783,5.0141507858475,0.909344378618873,0.535928260312357,0,0,0.213233981900981,0,0.0645889098360061,0,0,0.0636471582781649,0,1.74173398317569,0,0.740872583160463,1.29099969706817,0,0,0,0,4.31160970111617,2.34640942403454,0.244482888365733,0,0,0,0.320568492303233 | ||
|short_description=p1@NHSL1 | |short_description=p1@NHSL1 | ||
}} | }} |
Latest revision as of 05:01, 25 September 2015
Short description: | p1@NHSL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NHSL1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_001144060, uc003qhy.2, uc011edp.1_5end |
EntrezGene: | NHSL1 |
HGNC: | 21021 |
UniProt: | E2QRJ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 2.43e-11 | 58 |
hepatocyte | 1.25e-07 | 12 |
epithelial cell | 1.37e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 4.43e-12 | 118 |
intestine | 1.78e-11 | 17 |
gastrointestinal system | 1.15e-10 | 25 |
exocrine gland | 1.44e-10 | 31 |
exocrine system | 1.44e-10 | 31 |
digestive system | 1.40e-08 | 145 |
digestive tract | 1.40e-08 | 145 |
primitive gut | 1.40e-08 | 145 |
digestive tract diverticulum | 2.65e-08 | 23 |
endoderm-derived structure | 4.40e-08 | 160 |
endoderm | 4.40e-08 | 160 |
presumptive endoderm | 4.40e-08 | 160 |
sac | 6.33e-08 | 26 |
trunk region element | 7.83e-08 | 101 |
large intestine | 1.11e-07 | 11 |
abdomen element | 1.28e-07 | 54 |
abdominal segment element | 1.28e-07 | 54 |
foregut | 1.34e-07 | 87 |
hepatic diverticulum | 1.87e-07 | 22 |
liver primordium | 1.87e-07 | 22 |
epithelium of foregut-midgut junction | 2.71e-07 | 25 |
anatomical boundary | 2.71e-07 | 25 |
hepatobiliary system | 2.71e-07 | 25 |
foregut-midgut junction | 2.71e-07 | 25 |
septum transversum | 2.71e-07 | 25 |
lower digestive tract | 3.66e-07 | 5 |
epithelial sac | 4.00e-07 | 25 |
organ system subdivision | 5.10e-07 | 223 |
abdominal segment of trunk | 7.51e-07 | 60 |
abdomen | 7.51e-07 | 60 |