FFCP PHASE1:Hg19::chr5:10237680..10237685,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:10237680..10237685,+ | |||
|description=CAGE_peak_at_chr5:10237680..10237685,+ | |description=CAGE_peak_at_chr5:10237680..10237685,+ | ||
|id=chr5:10237680..10237685,+ | |id=chr5:10237680..10237685,+ | ||
|ontology_enrichment_celltype=CL:0000860!3.89e-23!45;CL:0002057!1.11e-22!42;CL:0002194!2.05e-16!63;CL:0000576!2.05e-16!63;CL:0000040!2.05e-16!63;CL:0000559!2.05e-16!63;CL:0002009!9.43e-16!65;CL:0000839!2.91e-14!70;CL:0000557!5.45e-14!71;CL:0000766!9.77e-13!76;CL:0002504!4.93e-11!3;CL:1000279!4.93e-11!3;CL:1000280!4.93e-11!3;CL:0000763!5.71e-08!112;CL:0000049!5.71e-08!112 | |ontology_enrichment_celltype=CL:0000860!3.89e-23!45;CL:0002057!1.11e-22!42;CL:0002194!2.05e-16!63;CL:0000576!2.05e-16!63;CL:0000040!2.05e-16!63;CL:0000559!2.05e-16!63;CL:0002009!9.43e-16!65;CL:0000839!2.91e-14!70;CL:0000557!5.45e-14!71;CL:0000766!9.77e-13!76;CL:0002504!4.93e-11!3;CL:1000279!4.93e-11!3;CL:1000280!4.93e-11!3;CL:0000763!5.71e-08!112;CL:0000049!5.71e-08!112 | ||
|ontology_enrichment_celltype_v019=CL:0002504;1.01e-24;3!CL:1000279;1.01e-24;3!CL:1000280;1.01e-24;3!CL:0000319;1.30e-19;1!CL:0000159;1.72e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002504,6.22e-25,3;CL:1000279,6.22e-25,3;CL:1000280,6.22e-25,3;CL:0000319,1.30e-19,1;CL:0000159,1.72e-10,2 | |||
|ontology_enrichment_development_v019=UBERON:0010122;2.85e-10;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3030;1.30e-19;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,1.30e-19,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!7.55e-12!80;UBERON:0001474!1.13e-10!86;UBERON:0002390!3.62e-09!102;UBERON:0003061!3.62e-09!102;UBERON:0004765!2.29e-08!101;UBERON:0001434!2.29e-08!101;UBERON:0000369!4.78e-08!4;UBERON:0002435!4.78e-08!4;UBERON:0000204!4.78e-08!4;UBERON:0010082!4.78e-08!4;UBERON:0002193!6.67e-08!112;UBERON:0002405!1.44e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0005383;6.21e-25;3!UBERON:0005382;6.21e-25;3!UBERON:0001874;1.71e-19;1!UBERON:0000369;5.64e-19;4!UBERON:0002435;5.64e-19;4!UBERON:0000204;5.64e-19;4!UBERON:0009663;2.83e-11;7!UBERON:0001873;2.85e-10;2!UBERON:0002420;5.64e-09;9!UBERON:0000125;5.64e-09;9!UBERON:0007245;5.64e-09;9!UBERON:0002308;5.64e-09;9!UBERON:0010009;5.64e-09;9!UBERON:0010011;5.64e-09;9!UBERON:0000454;5.64e-09;9!UBERON:0001155;6.61e-09;9!UBERON:0000059;1.90e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005383,7.93e-25,3;UBERON:0005382,7.93e-25,3;UBERON:0001874,1.88e-19,1;UBERON:0000369,6.77e-19,4;UBERON:0002435,6.77e-19,4;UBERON:0000204,6.77e-19,4;UBERON:0010082,6.77e-19,4;UBERON:0009663,3.14e-11,7;UBERON:0001873,3.27e-10,2;UBERON:0010122,3.27e-10,2;UBERON:0001155,5.64e-09,9;UBERON:0002420,6.11e-09,9;UBERON:0000125,6.11e-09,9;UBERON:0007245,6.11e-09,9;UBERON:0002308,6.11e-09,9;UBERON:0010009,6.11e-09,9;UBERON:0010011,6.11e-09,9;UBERON:0000454,6.11e-09,9;UBERON:0000059,1.67e-07,11 | |||
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| ||
|short_description=p@chr5:10237680..10237685,+ | |short_description=p@chr5:10237680..10237685,+ | ||
}} | }} |
Latest revision as of 08:21, 30 July 2015
Short description: | p@chr5:10237680..10237685, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:10237680..10237685, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
enteric smooth muscle cell | 6.22e-25 | 3 |
smooth muscle cell of large intestine | 6.22e-25 | 3 |
smooth muscle cell of colon | 6.22e-25 | 3 |
mucus secreting cell | 1.30e-19 | 1 |
seromucus secreting cell | 1.72e-10 | 2 |
Ontology term | p-value | n |
---|---|---|
caudate-putamen | 7.93e-25 | 3 |
dorsal striatum | 7.93e-25 | 3 |
putamen | 1.88e-19 | 1 |
corpus striatum | 6.77e-19 | 4 |
striatum | 6.77e-19 | 4 |
ventral part of telencephalon | 6.77e-19 | 4 |
future corpus striatum | 6.77e-19 | 4 |
telencephalic nucleus | 3.14e-11 | 7 |
caudate nucleus | 3.27e-10 | 2 |
future caudate nucleus | 3.27e-10 | 2 |
colon | 5.64e-09 | 9 |
basal ganglion | 6.11e-09 | 9 |
neural nucleus | 6.11e-09 | 9 |
nuclear complex of neuraxis | 6.11e-09 | 9 |
nucleus of brain | 6.11e-09 | 9 |
aggregate regional part of brain | 6.11e-09 | 9 |
collection of basal ganglia | 6.11e-09 | 9 |
cerebral subcortex | 6.11e-09 | 9 |
large intestine | 1.67e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 1.30e-19 | 1 |