FFCP PHASE1:Hg19::chr4:54424397..54424419,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84708 | |EntrezGene=84708 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6657 | |HGNC=6657 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-13bp_to_ENST00000306888_5end | |association_with_transcript=-13bp_to_ENST00000306888_5end | ||
|cluster_id=chr4:54424397..54424419,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_3_at_LNX1_5end | |description=CAGE_peak_3_at_LNX1_5end | ||
|id=chr4:54424397..54424419,- | |id=chr4:54424397..54424419,- | ||
|ontology_enrichment_celltype=CL:0002620!3.86e-13!23;CL:0002139!1.36e-08!24;CL:0000327!2.45e-07!14;CL:0000153!5.64e-07!9;CL:0000447!5.64e-07!9 | |ontology_enrichment_celltype=CL:0002620!3.86e-13!23;CL:0002139!1.36e-08!24;CL:0000327!2.45e-07!14;CL:0000153!5.64e-07!9;CL:0000447!5.64e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000153;1.10e-11;9!CL:0000447;1.10e-11;9!CL:0002620;1.18e-10;23!CL:0000138;1.85e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,9.60e-12,9;CL:0000447,9.60e-12,9;CL:0002620,8.76e-11,23;CL:0000058,1.45e-09,6;CL:0000138,1.45e-09,6;CL:0000047,3.97e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.23e-09;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;3.70e-07;5!DOID:450;3.70e-07;5!DOID:66;3.70e-07;5!DOID:423;3.70e-07;5!DOID:0080000;3.70e-07;5!DOID:11722;3.70e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.21e-07,5;DOID:450,3.21e-07,5;DOID:66,3.21e-07,5;DOID:423,3.21e-07,5;DOID:0080000,3.21e-07,5;DOID:11722,3.21e-07,5 | |||
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|ontology_enrichment_uberon_v019=UBERON:0002619;4.35e-47;22!UBERON:0001950;2.44e-43;20!UBERON:0001869;8.69e-43;32!UBERON:0003528;3.27e-41;34!UBERON:0002020;3.27e-41;34!UBERON:0000956;7.76e-41;25!UBERON:0000203;7.76e-41;25!UBERON:0002791;1.01e-39;32!UBERON:0001893;3.96e-39;34!UBERON:0002780;1.68e-31;41!UBERON:0001890;1.68e-31;41!UBERON:0000073;1.99e-29;53!UBERON:0002616;1.99e-29;53!UBERON:0000955;5.87e-24;68!UBERON:0001017;6.38e-24;75!UBERON:0001016;5.25e-19;83!UBERON:0000200;3.25e-15;6!UBERON:0001871;1.29e-12;6!UBERON:0001872;1.38e-12;5!UBERON:0002021;2.03e-12;5!UBERON:0000349;6.27e-12;5!UBERON:0000369;3.59e-10;4!UBERON:0002435;3.59e-10;4!UBERON:0000204;3.59e-10;4!UBERON:0004733;9.81e-10;12!UBERON:0002028;9.81e-10;12!UBERON:0002420;2.35e-09;9!UBERON:0007245;2.35e-09;9!UBERON:0010009;2.35e-09;9!UBERON:0010011;2.35e-09;9!UBERON:0000454;2.35e-09;9!UBERON:0004732;6.99e-09;13!UBERON:0000125;1.33e-08;9!UBERON:0002308;1.33e-08;9!UBERON:0001870;1.73e-08;3!UBERON:0002298;2.98e-08;6!UBERON:0005383;6.79e-08;3!UBERON:0005382;6.79e-08;3!UBERON:0002680;7.78e-08;9!UBERON:0001895;7.78e-08;9!UBERON:0002097;2.27e-07;41!UBERON:0007023;5.18e-07;114!UBERON:0000988;9.39e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.35e-58,81;UBERON:0000073,1.51e-53,53;UBERON:0002616,1.51e-53,53;UBERON:0001049,6.19e-53,56;UBERON:0005068,6.19e-53,56;UBERON:0006241,6.19e-53,56;UBERON:0007135,6.19e-53,56;UBERON:0001016,7.16e-51,89;UBERON:0000955,7.45e-51,68;UBERON:0006238,7.45e-51,68;UBERON:0001869,4.12e-48,32;UBERON:0003528,1.35e-47,34;UBERON:0002020,1.35e-47,34;UBERON:0002619,4.11e-47,22;UBERON:0002780,6.81e-45,41;UBERON:0001890,6.81e-45,41;UBERON:0003080,6.81e-45,41;UBERON:0006240,6.81e-45,41;UBERON:0001893,7.35e-45,34;UBERON:0002791,3.66e-44,32;UBERON:0001950,2.00e-43,20;UBERON:0000956,7.39e-41,25;UBERON:0000203,7.39e-41,25;UBERON:0003075,2.90e-36,82;UBERON:0007284,2.90e-36,82;UBERON:0002346,4.94e-34,86;UBERON:0003056,3.47e-31,61;UBERON:0010371,6.29e-31,104;UBERON:0004121,8.81e-26,171;UBERON:0000924,8.81e-26,171;UBERON:0006601,8.81e-26,171;UBERON:0010314,1.79e-25,132;UBERON:0007023,1.40e-20,114;UBERON:0000200,2.93e-15,6;UBERON:0011216,6.01e-14,223;UBERON:0001871,1.23e-12,6;UBERON:0001872,1.32e-12,5;UBERON:0002021,1.88e-12,5;UBERON:0000349,7.45e-12,5;UBERON:0000025,1.79e-10,192;UBERON:0000369,3.25e-10,4;UBERON:0002435,3.25e-10,4;UBERON:0000204,3.25e-10,4;UBERON:0010082,3.25e-10,4;UBERON:0004733,7.91e-10,12;UBERON:0002028,7.91e-10,12;UBERON:0007277,7.91e-10,12;UBERON:0003076,1.25e-09,15;UBERON:0003057,1.25e-09,15;UBERON:0002097,1.99e-09,41;UBERON:0002420,2.27e-09,9;UBERON:0007245,2.27e-09,9;UBERON:0010009,2.27e-09,9;UBERON:0010011,2.27e-09,9;UBERON:0000454,2.27e-09,9;UBERON:0004732,5.75e-09,13;UBERON:0000125,9.68e-09,9;UBERON:0002308,9.68e-09,9;UBERON:0001870,1.71e-08,3;UBERON:0002298,2.38e-08,6;UBERON:0002199,5.34e-08,46;UBERON:0002416,5.34e-08,46;UBERON:0002680,5.54e-08,9;UBERON:0001895,5.54e-08,9;UBERON:0010092,5.54e-08,9;UBERON:0005383,6.27e-08,3;UBERON:0005382,6.27e-08,3;UBERON:0000483,1.58e-07,306;UBERON:0000119,2.46e-07,309;UBERON:0004111,2.46e-07,240;UBERON:0000988,5.83e-07,3 | |||
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|short_description=p3@LNX1 | |short_description=p3@LNX1 | ||
}} | }} |
Latest revision as of 00:27, 18 September 2015
Short description: | p3@LNX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LNX1_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -13bp_to_ENST00000306888_5end |
EntrezGene: | LNX1 |
HGNC: | 6657 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 9.60e-12 | 9 |
carbohydrate secreting cell | 9.60e-12 | 9 |
skin fibroblast | 8.76e-11 | 23 |
chondroblast | 1.45e-09 | 6 |
chondrocyte | 1.45e-09 | 6 |
neuronal stem cell | 3.97e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.21e-07 | 5 |
myotonic disease | 3.21e-07 | 5 |
muscle tissue disease | 3.21e-07 | 5 |
myopathy | 3.21e-07 | 5 |
muscular disease | 3.21e-07 | 5 |
myotonic dystrophy | 3.21e-07 | 5 |