FFCP PHASE1:Hg19::chr17:38613674..38613696,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:38613674..38613696,- | |||
|coexpression_cluster_id=C353 | |||
|description=CAGE_peak_at_chr17:38613674..38613696,- | |description=CAGE_peak_at_chr17:38613674..38613696,- | ||
|id=chr17:38613674..38613696,- | |id=chr17:38613674..38613696,- | ||
|ontology_enrichment_celltype=CL:0000055!1.68e-20!180;CL:0000183!2.92e-14!59;CL:0000680!3.84e-14!57;CL:0000056!3.84e-14!57;CL:0000355!3.84e-14!57;CL:0000187!1.93e-12!54;CL:0000222!1.04e-11!119;CL:0000393!1.97e-11!60;CL:0000211!1.97e-11!60;CL:0000057!9.51e-11!75;CL:0000192!1.00e-08!42;CL:0000514!1.00e-08!42;CL:0000359!1.57e-07!32 | |ontology_enrichment_celltype=CL:0000055!1.68e-20!180;CL:0000183!2.92e-14!59;CL:0000680!3.84e-14!57;CL:0000056!3.84e-14!57;CL:0000355!3.84e-14!57;CL:0000187!1.93e-12!54;CL:0000222!1.04e-11!119;CL:0000393!1.97e-11!60;CL:0000211!1.97e-11!60;CL:0000057!9.51e-11!75;CL:0000192!1.00e-08!42;CL:0000514!1.00e-08!42;CL:0000359!1.57e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0000135;4.21e-11;3!CL:0000388;4.21e-11;3!CL:0002564;4.80e-11;3!CL:0000153;2.39e-09;9!CL:0000447;2.39e-09;9!CL:0002540;3.95e-08;6!CL:0002602;1.10e-07;2!CL:0002561;3.02e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000135,3.92e-11,3;CL:0000388,3.92e-11,3;CL:0002564,5.10e-11,3;CL:0000153,2.52e-09,9;CL:0000447,2.52e-09,9;CL:0002540,4.83e-08,6;CL:0002602,1.24e-07,2;CL:0002561,1.51e-07,2;CL:0000680,7.29e-07,58;CL:0000056,7.29e-07,58;CL:0000355,7.29e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.11e-13!83;UBERON:0002329!1.11e-13!83;UBERON:0003077!1.11e-13!83;UBERON:0003059!1.11e-13!83;UBERON:0007282!1.11e-13!83;UBERON:0009618!1.11e-13!83;UBERON:0007285!1.11e-13!83;UBERON:0005256!6.47e-13!143;UBERON:0001134!2.36e-12!61;UBERON:0002036!2.36e-12!61;UBERON:0003082!2.36e-12!61;UBERON:0002385!3.55e-12!63;UBERON:0001015!3.55e-12!63;UBERON:0000383!3.55e-12!63;UBERON:0000490!6.26e-12!138;UBERON:0000486!2.30e-11!82;UBERON:0004290!4.09e-11!70;UBERON:0002100!1.04e-10!216;UBERON:0004872!2.62e-09!84;UBERON:0003914!2.52e-08!118;UBERON:0001637!2.44e-07!42;UBERON:0003509!2.44e-07!42;UBERON:0004572!2.44e-07!42;UBERON:0002049!3.39e-07!79;UBERON:0007798!3.39e-07!79;UBERON:0001981!3.96e-07!60;UBERON:0007500!3.96e-07!60;UBERON:0004537!3.96e-07!60;UBERON:0006965!3.96e-07!60 | |||
|ontology_enrichment_uberon_v019=UBERON:0004905;3.03e-20;8!UBERON:0000982;3.03e-20;8!UBERON:0004770;3.03e-20;8!UBERON:0011135;5.04e-17;5!UBERON:0002216;5.04e-17;5!UBERON:0011134;5.04e-17;5!UBERON:0002209;5.04e-17;5!UBERON:0002213;5.04e-17;5!UBERON:0007844;5.04e-17;5!UBERON:0011138;5.04e-17;5!UBERON:0001130;5.04e-17;5!UBERON:0001066;5.04e-17;5!UBERON:0001468;5.04e-17;5!UBERON:0000075;4.41e-12;16!UBERON:0002204;1.14e-11;70!UBERON:0007846;4.21e-11;3!UBERON:0000043;4.21e-11;3!UBERON:0007845;4.21e-11;3!UBERON:0002242;4.80e-11;3!UBERON:0004765;2.16e-10;26!UBERON:0001434;2.18e-10;36!UBERON:0006444;1.10e-07;2!UBERON:0001995;1.10e-07;2!UBERON:0004715;1.10e-07;2!UBERON:0005406;1.88e-07;2!UBERON:0005933;3.02e-07;2!UBERON:0005942;3.02e-07;2!UBERON:0005932;3.02e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,3.31e-20,8;UBERON:0000982,3.31e-20,8;UBERON:0004770,3.31e-20,8;UBERON:0011135,6.02e-17,5;UBERON:0002216,6.02e-17,5;UBERON:0011134,6.02e-17,5;UBERON:0002209,6.02e-17,5;UBERON:0002213,6.02e-17,5;UBERON:0005856,6.02e-17,5;UBERON:0005866,6.02e-17,5;UBERON:0005863,6.02e-17,5;UBERON:0007844,6.02e-17,5;UBERON:0011138,6.02e-17,5;UBERON:0001130,6.02e-17,5;UBERON:0001066,6.02e-17,5;UBERON:0001468,6.02e-17,5;UBERON:0000075,4.39e-12,16;UBERON:0007846,3.92e-11,3;UBERON:0000043,3.92e-11,3;UBERON:0007845,3.92e-11,3;UBERON:0002242,5.10e-11,3;UBERON:0003068,5.10e-11,3;UBERON:0002328,5.10e-11,3;UBERON:0004880,5.10e-11,3;UBERON:0002204,6.36e-10,167;UBERON:0011137,5.08e-08,14;UBERON:0006444,1.24e-07,2;UBERON:0001995,1.24e-07,2;UBERON:0004715,1.24e-07,2;UBERON:0005933,1.51e-07,2;UBERON:0005942,1.51e-07,2;UBERON:0005932,1.51e-07,2;UBERON:0005406,1.77e-07,2 | |||
|phase1_expression=1.45342703416445,0.214100523890983,0.986680828671798,2.00146596706261,1.78784437770915,5.23403114460221,0,0,0.261185628199839,0,0,0,0,2.10402800032079,3.31397375727916,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.255725123687061,2.1686349143074,4.01070328508712,4.34539556882471,0,0.486634870302636,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,1.10047216776027,0.208994966536811,0,0,0,0.402829317109147,0,0.732186172644509,0,1.62028389576352,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,1.49091585508596,0,0.132409180813219,0.573673241497627,0,1.12135520028461,0,0.74000264525148,0.311211035399766,0.269421344139376,0.163461903113459,0.605429710579726,1.72852777344,0,0.312160076830321,0,0.298897361103602,0,0,0.140450806702248,0.61246251376468,0.61417158655884,0.413303124703062,0,1.97813543422845,0,0,0.168336113954066,0.250237039743928,0,0,3.98434134538726,1.50238058906597,0.113432183160021,0.179389635688862,0.213557388818567,0.423863802319124,0.900273288253207,0.309157587715317,0,0.37223371266318,0,0,0.504867548488229,0.460249493211497,0.323292113637624,0.355009592516614,0.201504196455281,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,1.85747171212792,2.88751792667834,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,1.77236972004421,0,0,0,0,0,0,0.0925884451585296,0,0,1.44331342025273,0,0,0.144366447761074,0.462985512576611,0,0,0,0,0,0,0.93733833986777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0.4400297149257,0,0,0.845302752556,0.531876233169741,1.04007436911366,1.02882949704857,0,1.0656887160644,1.00084595560703,0,0,0.325736184293735,0.355391948742546,0,0.904318131178758,0,0.699810938274399,0,0,0,0,0,0,1.01346914667305,1.02738161275192,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,2.20844685094452,8.00272833695483,6.23909554509392,2.70362119990049,4.63915370872621,4.41566762095017,0.35142424497814,0.300946099727719,2.27407504055985,1.03473071292505,0.664225598535437,0.368738337083406,0.347534457872331,0.979005787313703,1.37257369524342,0,0,0,0.303127571446259,0,0.30239029332968,0,0.306923946576125,1.40330047216537,0.384417447767103,0,0.321707842287215,1.48418066444991,0.154209693802656,0.710246901252508,0.0821271560138091,0,1.62694529843943,0,0,0.184161977871793,0.574072240823034,0.546273504020151,0.131124414959424,0,0,0,0,0,1.13733384070897,0.510281115829547,0.647747748306418,0,0,0.501689773854853,0,0,0.447749509444357,0,0,0,0,0,0,0,0.082509499920588,0,0.650060246036521,0,0.48335359146061,1.3864375540318,1.22802939780904,0.275673144969061,0.107420244868274,1.88521702088497,0.170453254832202,0.0890320356467374,0,0,0,0,0.929691098594572,1.25924938732256,0,0.616067160352178,0,1.73986598415015,0.9266210955196,0,0.744316738719335,0.949138274156178,0.190630193923825,0,0,1.27281299170375,0.78494864019923,0.719489830333259,1.37268514868027,0.353437207037059,0.808729926293264,0,1.68503382495592,0,0.974853958525138,3.16950440270266,0.409499734223957,0.282810863907425,1.13008116620243,1.65409603063837,0,0.438450885253763,0,0.655894752046633,0,0.92947049429925,0.845086807596724,0,0,0,0,4.64436797654861,7.24448764511784,0,0,0,0,0,0,0,1.68471475667626,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0.445234820091624,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0.384751292518985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0.31593289814244,0,0,0.664653872707185,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0.451961481561065,0,0,0,0,0.0801588202515337,0.640358984218058,0.39961921916426,0.144090417154106,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0.429765441419957,0,0,0.229160424011684,0,0,0.858452096273142,0,0,0.720599767084807,0,0.0787831823072236,0.0824158583811665,0,0,0,0,0,0.321506296930038,0.137539436597234,0,0,0,0,0,0.157611414598396,0.0524545881349981,0,0,0,0.714695326373367,0,0,0.542999601753713,4.32110745600634,2.28611152076586,0,0,0,0.453248366080503,0.146552233678082,0,0,0,0,0,0,0.157204305099666,0,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,1.6468607378872,0,0,0.447764408660622,0,0,0.189403005275089,1.50940741051545,1.77962244319307,0,0.302461847526478,0,0.295710299979268,0,0.899606224327209,0,0.829412415681711,0.53168342911599,0,0.150257608997218,0.761610424337591,0.406870733204662,0.909243296012797,0,0,0.398095888698616,0,0.343395705182793,0,0,0.192619830407303,0,0,0,0,0.244736704506468,0,0.308801447160972,0,0.530067437837643,0,0,0,0,0,0,0,0,0,0.327609848846413,0.245772908753719,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0.63600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| ||
|short_description=p@chr17:38613674..38613696,- | |short_description=p@chr17:38613674..38613696,- | ||
}} | }} |
Latest revision as of 16:29, 25 July 2015
Short description: | p@chr17:38613674..38613696, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:38613674..38613696, - |
Coexpression cluster: | C353_tenocyte_Nucleus_Chondrocyte_Anulus_Fibroblast_Synoviocyte_tridermal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibrocyte | 3.92e-11 | 3 |
tendon cell | 3.92e-11 | 3 |
nucleus pulposus cell of intervertebral disc | 5.10e-11 | 3 |
GAG secreting cell | 2.52e-09 | 9 |
carbohydrate secreting cell | 2.52e-09 | 9 |
mesenchymal stem cell of the bone marrow | 4.83e-08 | 6 |
annulus pulposus cell | 1.24e-07 | 2 |
outer root sheath cell | 1.51e-07 | 2 |
muscle precursor cell | 7.29e-07 | 58 |
myoblast | 7.29e-07 | 58 |
multi-potent skeletal muscle stem cell | 7.29e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
articulation | 3.31e-20 | 8 |
skeletal joint | 3.31e-20 | 8 |
articular system | 3.31e-20 | 8 |
intervertebral cartilage | 6.02e-17 | 5 |
symphysis | 6.02e-17 | 5 |
nonsynovial joint | 6.02e-17 | 5 |
fibrous joint | 6.02e-17 | 5 |
cartilaginous joint | 6.02e-17 | 5 |
developing mesenchymal condensation | 6.02e-17 | 5 |
pre-cartilage condensation | 6.02e-17 | 5 |
cartilaginous condensation | 6.02e-17 | 5 |
cartilage element | 6.02e-17 | 5 |
post-cranial axial skeletal system | 6.02e-17 | 5 |
vertebral column | 6.02e-17 | 5 |
intervertebral disk | 6.02e-17 | 5 |
intervertebral joint | 6.02e-17 | 5 |
subdivision of skeletal system | 4.39e-12 | 16 |
dense regular connective tissue | 3.92e-11 | 3 |
tendon | 3.92e-11 | 3 |
regular connective tissue | 3.92e-11 | 3 |
nucleus pulposus | 5.10e-11 | 3 |
axial mesoderm | 5.10e-11 | 3 |
notochord | 5.10e-11 | 3 |
chordamesoderm | 5.10e-11 | 3 |
musculoskeletal system | 6.36e-10 | 167 |
axial skeletal system | 5.08e-08 | 14 |
annulus fibrosus | 1.24e-07 | 2 |
fibrocartilage | 1.24e-07 | 2 |
annulus fibrosus disci intervertebralis | 1.24e-07 | 2 |
hair root sheath | 1.51e-07 | 2 |
hair outer root sheath | 1.51e-07 | 2 |
bulb of hair follicle | 1.51e-07 | 2 |
perirenal fat | 1.77e-07 | 2 |