FFCP PHASE1:Hg19::chr11:2017656..2017665,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:2017656..2017665,-
|short_description=p36@H19
|description=CAGE_peak_36_at_H19_5end
|association_with_transcript=-9bp_to_uc001luz.1_5end
|EntrezGene=2831...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=283120 | |EntrezGene=283120 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=4713 | |HGNC=4713 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-9bp_to_uc001luz.1_5end | |||
|cluster_id=chr11:2017656..2017665,- | |||
|coexpression_cluster_id=C227 | |||
|description=CAGE_peak_36_at_H19_5end | |||
|id=chr11:2017656..2017665,- | |||
|ontology_enrichment_celltype=CL:0000349!1.84e-09!3;CL:0002577!1.84e-09!3;CL:0002541!2.30e-09!3;CL:0002536!3.15e-07!2;CL:0002575!3.98e-07!2;CL:0000188!6.59e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000349;4.51e-43;19!CL:0002541;9.05e-21;3!CL:0000669;2.26e-16;4!CL:0002536;1.38e-15;2!CL:0002575;2.62e-15;2!CL:0002537;1.45e-13;5!CL:0002577;1.34e-10;3!CL:0002581;2.42e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,3.93e-43,19;CL:0002541,7.64e-21,3;CL:0000669,2.26e-16,4;CL:0002536,1.43e-15,2;CL:0002575,2.53e-15,2;CL:0002537,1.31e-13,5;CL:0002577,1.41e-10,3;CL:0002581,2.17e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0008947;8.62e-14;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!3.85e-28!14;UBERON:0000158!3.85e-28!14;UBERON:0001737!1.46e-24!9;UBERON:0003124!1.43e-19!7;UBERON:0001557!1.09e-18!19;UBERON:0000478!5.54e-18!24;UBERON:0001987!6.40e-12!4;UBERON:0004340!6.40e-12!4;UBERON:0000305!6.40e-11!7;UBERON:0004923!7.13e-10!57;UBERON:0000072!9.29e-10!46;UBERON:0004871!1.73e-09!8;UBERON:0000476!2.30e-09!3;UBERON:0000920!2.30e-09!3;UBERON:0000065!2.80e-09!53;UBERON:0008947!6.08e-08!38;UBERON:0003258!6.08e-08!38;UBERON:0000064!1.55e-07!219;UBERON:0000077!2.21e-07!130;UBERON:0003104!4.87e-07!238;UBERON:0009142!4.87e-07!238;UBERON:0001004!8.79e-07!72 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.01e-46;9!UBERON:0001557;1.01e-46;9!UBERON:0005631;8.57e-44;10!UBERON:0000158;8.57e-44;10!UBERON:0000478;1.06e-33;24!UBERON:0000305;1.08e-25;7!UBERON:0003124;9.05e-21;3!UBERON:0000920;9.05e-21;3!UBERON:0000072;6.27e-10;37!UBERON:0000065;4.99e-09;44!UBERON:0001987;3.70e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.05e-48,14;UBERON:0000158,1.05e-48,14;UBERON:0001737,1.22e-46,9;UBERON:0000478,9.52e-34,24;UBERON:0001557,3.64e-27,19;UBERON:0000305,9.75e-26,7;UBERON:0003124,1.37e-24,7;UBERON:0004871,1.66e-22,8;UBERON:0000920,7.64e-21,3;UBERON:0008947,2.99e-10,38;UBERON:0003258,2.99e-10,38;UBERON:0000072,3.52e-10,47;UBERON:0004923,5.26e-09,66;UBERON:0000065,1.10e-08,54;UBERON:0001987,3.84e-08,4;UBERON:0004340,3.84e-08,4;UBERON:0001041,1.76e-07,87 | |||
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| ||
|short_description=p36@H19 | |||
}} | }} |
Latest revision as of 06:34, 17 September 2015
Short description: | p36@H19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_36_at_H19_5end |
Coexpression cluster: | C227_chorionic_amniotic_Mesenchymal_Placental_gastric_diaphragm_tongue |
Association with transcript: | -9bp_to_uc001luz.1_5end |
EntrezGene: | H19 |
HGNC: | 4713 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 3.93e-43 | 19 |
chorionic membrane mesenchymal stem cell | 7.64e-21 | 3 |
pericyte cell | 2.26e-16 | 4 |
amniotic epithelial cell | 1.43e-15 | 2 |
central nervous system pericyte | 2.53e-15 | 2 |
amnion mesenchymal stem cell | 1.31e-13 | 5 |
placental epithelial cell | 1.41e-10 | 3 |
perirenal preadipocyte | 2.17e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.05e-48 | 14 |
membranous layer | 1.05e-48 | 14 |
larynx | 1.22e-46 | 9 |
extraembryonic structure | 9.52e-34 | 24 |
upper respiratory tract | 3.64e-27 | 19 |
amnion | 9.75e-26 | 7 |
chorion | 1.37e-24 | 7 |
somatic layer of lateral plate mesoderm | 1.66e-22 | 8 |
egg chorion | 7.64e-21 | 3 |
respiratory primordium | 2.99e-10 | 38 |
endoderm of foregut | 2.99e-10 | 38 |
segment of respiratory tract | 3.52e-10 | 47 |
organ component layer | 5.26e-09 | 66 |
respiratory tract | 1.10e-08 | 54 |
placenta | 3.84e-08 | 4 |
allantois | 3.84e-08 | 4 |
foregut | 1.76e-07 | 87 |