FFCP PHASE1:Hg19::chr19:677885..677909,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:677885..677909,+ | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_at_chr19:677885..677909,+ | |description=CAGE_peak_at_chr19:677885..677909,+ | ||
|id=chr19:677885..677909,+ | |id=chr19:677885..677909,+ | ||
|ontology_enrichment_celltype=CL:0002368!5.92e-08!13;CL:0000136!4.02e-07!15 | |ontology_enrichment_celltype=CL:0002368!5.92e-08!13;CL:0000136!4.02e-07!15 | ||
|ontology_enrichment_celltype_v019=CL:0002541;1.96e-38;3!CL:0002615;1.33e-17;3!CL:0000136;1.61e-15;13!CL:0002616;1.18e-13;1!CL:0000349;6.29e-11;19!CL:1000746;5.66e-08;7!CL:1000612;5.66e-08;7!CL:0000650;1.81e-07;2!CL:1000500;1.81e-07;2!CL:1000618;1.81e-07;2!CL:1001318;1.81e-07;2!CL:0002173;1.81e-07;2!CL:0002617;1.81e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,3.06e-38,3;CL:0002615,1.39e-17,3;CL:0002616,6.65e-14,1;CL:0000136,1.59e-13,15;CL:0000349,6.71e-11,19;CL:1000746,6.29e-08,7;CL:1000612,6.29e-08,7;CL:0002617,1.99e-07,2;CL:0000650,2.40e-07,2;CL:1000500,2.40e-07,2;CL:1000618,2.40e-07,2;CL:1001318,2.40e-07,2;CL:0002173,2.40e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0000358;5.15e-14;1!UBERON:0003124;1.18e-13;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000478!4.98e-10!24;UBERON:0003124!1.43e-08!7;UBERON:0005631!3.09e-08!14;UBERON:0000158!3.09e-08!14;UBERON:0004457!4.34e-07!12;UBERON:0000042!4.34e-07!12;UBERON:0003688!6.48e-07!6;UBERON:0002358!6.48e-07!6;UBERON:0003684!6.48e-07!6;UBERON:0001178!6.48e-07!6;UBERON:0004119!6.75e-07!169;UBERON:0000925!6.75e-07!169;UBERON:0006595!6.75e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;1.96e-38;3!UBERON:0000920;1.96e-38;3!UBERON:0005631;1.66e-20;10!UBERON:0000158;1.66e-20;10!UBERON:0000478;1.48e-18;24!UBERON:0003688;2.83e-09;6!UBERON:0002358;2.83e-09;6!UBERON:0003684;2.83e-09;6!UBERON:0001178;2.83e-09;6!UBERON:0000074;5.66e-08;7!UBERON:0001229;5.66e-08;7!UBERON:0003567;1.81e-07;2!UBERON:0003838;1.81e-07;2!UBERON:0003586;1.81e-07;2!UBERON:0005169;1.81e-07;2!UBERON:0002321;1.81e-07;2!UBERON:0005406;1.81e-07;2!UBERON:0005215;1.81e-07;2!UBERON:0002303;1.81e-07;2!UBERON:0002319;1.81e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,3.06e-38,3;UBERON:0003124,9.75e-29,7;UBERON:0005631,2.64e-22,14;UBERON:0000158,2.64e-22,14;UBERON:0000478,1.73e-18,24;UBERON:0003688,2.89e-09,6;UBERON:0002358,2.89e-09,6;UBERON:0003684,2.89e-09,6;UBERON:0001178,2.89e-09,6;UBERON:0004923,1.06e-08,66;UBERON:0010532,6.29e-08,7;UBERON:0000074,6.29e-08,7;UBERON:0001229,6.29e-08,7;UBERON:0001230,6.29e-08,7;UBERON:0003220,6.29e-08,7;UBERON:0005749,6.29e-08,7;UBERON:0004199,6.29e-08,7;UBERON:0004209,6.29e-08,7;UBERON:0004198,6.29e-08,7;UBERON:0005406,1.36e-07,2;UBERON:0003567,2.40e-07,2;UBERON:0003838,2.40e-07,2;UBERON:0003586,2.40e-07,2;UBERON:0005169,2.40e-07,2;UBERON:0002321,2.40e-07,2;UBERON:0005215,2.40e-07,2;UBERON:0002303,2.40e-07,2;UBERON:0002319,2.40e-07,2;UBERON:0005103,4.84e-07,8;UBERON:0000083,4.84e-07,8;UBERON:0009201,4.84e-07,8;UBERON:0006553,4.84e-07,8;UBERON:0003074,4.84e-07,8;UBERON:0003060,4.84e-07,8 | |||
|phase1_expression=1.09007027562334,0.214100523890983,0.422863212287913,2.00146596706261,1.34088328328186,1.74467704820074,0,0,0,0,1.39560233594486,0,0,0,0.662794751455832,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.6024118375565,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0.741568885568859,0,0,0,0,0,0.371457501329565,0,0,0,0.56530794192401,0.419499436209906,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0.12663051166458,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0.741800787835671,0,0,0,0,0.277064115484183,0.877955241761676,0.30648779579902,0.300476117813194,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0.161646056818812,0.355009592516614,0.10075209822764,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.168584690078102,0,0.110293972732394,0.435758888184812,0,0.269662616320329,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0.329250856225877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0.300343057843917,0,0,0,0,0.387815147273333,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0,0,0.117141414992713,0,6.82222512167955,0,0,0.184369168541703,0,0,0.343143423810856,0,0,0,0.606255142892519,0,0.30239029332968,0,0,0,0.640695746278505,0,0.321707842287215,0,0,0,0,0,0,0,1.40354529212299,0.644566922551274,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00337954770971,0,0,0,0,0,0,0.984043937099117,0,0.412164046590889,0,0,0,0,0,0,0,0.15350367472613,0,0.107420244868274,0.145016693914229,0,0,0.165284915360978,0.384380134730212,0,0.50578890427775,0,0.31481234683064,0,0,0,0,0.18532421910392,0.143124886741991,0,0.316379424718726,0.190630193923825,0,0,0,0.78494864019923,0,0,0.235624804691373,0,0,0,0.48763373908959,0,0,0,0.141405431953713,0,0,0,0,0,0.655894752046633,0.202910376962704,0,0,0.143411352204052,0,0.7133421029625,0,0.633322905892992,0,0,0,0.192444225451024,0.670302275535787,0,0.282431402330337,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3874448473769,0.593929361665277,0.307160702099232,0,0,0,0,0,0.597743964753209,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0.179515288819544,0.217294743844016,10.8460394308853,1.00757352742049,20.7883562647268,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0.296521128680622,0.494255755786011,0.313265848516366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0730893170861856,0,0,0,0.225980740780532,0,0,0,0.195551382734803,0.160317640503067,0,0.599428828746391,0,0,0,0,0,0,0.407712618220842,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0.446342914883745,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342173675768659,0,0.213574825135389,0,0,0,0,0,0,0,0.5013797880454,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0.107410557042488,0,0.796191777397232,0.400027764663154,0.343395705182793,0,0,0,0.214441591374926,0.260994291965212,0.226705925512272,0.231522474323834,0,0,0.308801447160972,0.657852148736121,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0.231051332300676,0.381382095467167,0,0,0,0,0,0.523813388962845,0,0.295712172434091,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06442844195167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691259661814092,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0.509781344063451,0,0.0644578879735772,0,0,0,0,0,0,0,0.315543124386369,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.985123076837112,0.267964130156178,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0.0898252021065869,2.34640942403454,0,0,0,0,0 | |phase1_expression=1.09007027562334,0.214100523890983,0.422863212287913,2.00146596706261,1.34088328328186,1.74467704820074,0,0,0,0,1.39560233594486,0,0,0,0.662794751455832,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.6024118375565,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0.741568885568859,0,0,0,0,0,0.371457501329565,0,0,0,0.56530794192401,0.419499436209906,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0.12663051166458,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0.741800787835671,0,0,0,0,0.277064115484183,0.877955241761676,0.30648779579902,0.300476117813194,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0.161646056818812,0.355009592516614,0.10075209822764,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.168584690078102,0,0.110293972732394,0.435758888184812,0,0.269662616320329,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0.329250856225877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0.300343057843917,0,0,0,0,0.387815147273333,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0,0,0.117141414992713,0,6.82222512167955,0,0,0.184369168541703,0,0,0.343143423810856,0,0,0,0.606255142892519,0,0.30239029332968,0,0,0,0.640695746278505,0,0.321707842287215,0,0,0,0,0,0,0,1.40354529212299,0.644566922551274,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00337954770971,0,0,0,0,0,0,0.984043937099117,0,0.412164046590889,0,0,0,0,0,0,0,0.15350367472613,0,0.107420244868274,0.145016693914229,0,0,0.165284915360978,0.384380134730212,0,0.50578890427775,0,0.31481234683064,0,0,0,0,0.18532421910392,0.143124886741991,0,0.316379424718726,0.190630193923825,0,0,0,0.78494864019923,0,0,0.235624804691373,0,0,0,0.48763373908959,0,0,0,0.141405431953713,0,0,0,0,0,0.655894752046633,0.202910376962704,0,0,0.143411352204052,0,0.7133421029625,0,0.633322905892992,0,0,0,0.192444225451024,0.670302275535787,0,0.282431402330337,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3874448473769,0.593929361665277,0.307160702099232,0,0,0,0,0,0.597743964753209,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0.179515288819544,0.217294743844016,10.8460394308853,1.00757352742049,20.7883562647268,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0.296521128680622,0.494255755786011,0.313265848516366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0730893170861856,0,0,0,0.225980740780532,0,0,0,0.195551382734803,0.160317640503067,0,0.599428828746391,0,0,0,0,0,0,0.407712618220842,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0.446342914883745,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342173675768659,0,0.213574825135389,0,0,0,0,0,0,0,0.5013797880454,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0.107410557042488,0,0.796191777397232,0.400027764663154,0.343395705182793,0,0,0,0.214441591374926,0.260994291965212,0.226705925512272,0.231522474323834,0,0,0.308801447160972,0.657852148736121,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0.231051332300676,0.381382095467167,0,0,0,0,0,0.523813388962845,0,0.295712172434091,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06442844195167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691259661814092,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0.509781344063451,0,0.0644578879735772,0,0,0,0,0,0,0,0.315543124386369,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.985123076837112,0.267964130156178,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0.0898252021065869,2.34640942403454,0,0,0,0,0 | ||
|short_description=p@chr19:677885..677909,+ | |short_description=p@chr19:677885..677909,+ | ||
}} | }} |
Latest revision as of 18:20, 27 July 2015
Short description: | p@chr19:677885..677909, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:677885..677909, + |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 3.06e-38 | 3 |
adipocyte of omentum tissue | 1.39e-17 | 3 |
perirenal adipocyte cell | 6.65e-14 | 1 |
fat cell | 1.59e-13 | 15 |
extraembryonic cell | 6.71e-11 | 19 |
glomerular cell | 6.29e-08 | 7 |
kidney corpuscule cell | 6.29e-08 | 7 |
adipocyte of breast | 1.99e-07 | 2 |
mesangial cell | 2.40e-07 | 2 |
kidney interstitial cell | 2.40e-07 | 2 |
juxtaglomerular complex cell | 2.40e-07 | 2 |
renal interstitial pericyte | 2.40e-07 | 2 |
extraglomerular mesangial cell | 2.40e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 3.06e-38 | 3 |
chorion | 9.75e-29 | 7 |
extraembryonic membrane | 2.64e-22 | 14 |
membranous layer | 2.64e-22 | 14 |
extraembryonic structure | 1.73e-18 | 24 |
omentum | 2.89e-09 | 6 |
peritoneum | 2.89e-09 | 6 |
abdominal cavity | 2.89e-09 | 6 |
visceral peritoneum | 2.89e-09 | 6 |
organ component layer | 1.06e-08 | 66 |
primitive nephron | 6.29e-08 | 7 |
renal glomerulus | 6.29e-08 | 7 |
renal corpuscle | 6.29e-08 | 7 |
glomerular capsule | 6.29e-08 | 7 |
metanephric mesenchyme | 6.29e-08 | 7 |
glomerular tuft | 6.29e-08 | 7 |
S-shaped body | 6.29e-08 | 7 |
renal vesicle | 6.29e-08 | 7 |
comma-shaped body | 6.29e-08 | 7 |
perirenal fat | 1.36e-07 | 2 |
abdomen connective tissue | 2.40e-07 | 2 |
abdominal segment connective tissue | 2.40e-07 | 2 |
trunk connective tissue | 2.40e-07 | 2 |
interstitial tissue | 2.40e-07 | 2 |
extraglomerular mesangium | 2.40e-07 | 2 |
kidney interstitium | 2.40e-07 | 2 |
juxtaglomerular apparatus | 2.40e-07 | 2 |
mesangium | 2.40e-07 | 2 |
mesonephric epithelium | 4.84e-07 | 8 |
mesonephric tubule | 4.84e-07 | 8 |
nephric duct | 4.84e-07 | 8 |
renal duct | 4.84e-07 | 8 |
mesonephric duct | 4.84e-07 | 8 |
pronephric duct | 4.84e-07 | 8 |