FFCP PHASE1:Hg19::chr19:41257196..41257214,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6626 | |EntrezGene=6626 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11151 | |HGNC=11151 | ||
|TSSclassifier=strong | |||
|UniProt=B4DDC7 | |UniProt=B4DDC7 | ||
|association_with_transcript=70bp_to_ENST00000545469_5end | |association_with_transcript=70bp_to_ENST00000545469_5end | ||
|cluster_id=chr19:41257196..41257214,+ | |||
|coexpression_cluster_id=C3793 | |||
|description=CAGE_peak_5_at_SNRPA_5end | |description=CAGE_peak_5_at_SNRPA_5end | ||
|id=chr19:41257196..41257214,+ | |id=chr19:41257196..41257214,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.67e-32!254;CL:0000012!4.96e-18!682;CL:0000548!1.65e-17!679;CL:0000004!1.65e-17!679;CL:0000255!1.65e-17!679;CL:0002321!9.49e-15!248;CL:0000220!5.69e-14!246;CL:0000003!7.41e-12!722;CL:1000449!4.01e-08!16;CL:0000221!6.86e-08!71;CL:0000076!1.02e-07!62;CL:0000144!1.62e-07!625;CL:0002078!2.26e-07!44;CL:1000497!3.39e-07!18;CL:0002518!3.39e-07!18;CL:0000063!4.70e-07!578 | |ontology_enrichment_celltype=CL:0000066!1.67e-32!254;CL:0000012!4.96e-18!682;CL:0000548!1.65e-17!679;CL:0000004!1.65e-17!679;CL:0000255!1.65e-17!679;CL:0002321!9.49e-15!248;CL:0000220!5.69e-14!246;CL:0000003!7.41e-12!722;CL:1000449!4.01e-08!16;CL:0000221!6.86e-08!71;CL:0000076!1.02e-07!62;CL:0000144!1.62e-07!625;CL:0002078!2.26e-07!44;CL:1000497!3.39e-07!18;CL:0002518!3.39e-07!18;CL:0000063!4.70e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:1000449;4.62e-09;15!CL:1000497;5.80e-08;17!CL:0002518;5.80e-08;17!CL:0002681;2.69e-07;12!CL:0002584;2.69e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.76e-33,253;CL:0002321,8.36e-15,250;CL:1000449,5.27e-09,15;CL:1000497,6.47e-08,17;CL:0002518,6.47e-08,17;CL:0000221,1.06e-07,72;CL:0002078,1.27e-07,45;CL:0000076,1.64e-07,63;CL:0002681,2.92e-07,12;CL:0002584,2.92e-07,12;CL:0000115,5.78e-07,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!7.21e-28!235;DOID:14566!1.53e-26!239;DOID:0050687!2.14e-17!143;DOID:305!2.87e-14!106;DOID:0050686!1.05e-11!137;DOID:3095!9.04e-09!22;DOID:2994!9.04e-09!22;DOID:2531!8.37e-07!51;DOID:0060083!8.37e-07!51 | |||
|ontology_enrichment_disease_v019=DOID:3095;8.80e-09;22!DOID:2994;8.80e-09;22 | |||
|ontology_enrichment_disease_v019_2=DOID:162,7.41e-28,235;DOID:14566,1.57e-26,239;DOID:0050687,2.12e-17,143;DOID:305,2.85e-14,106;DOID:0050686,1.08e-11,137;DOID:3095,9.01e-09,22;DOID:2994,9.01e-09,22;DOID:2531,8.35e-07,51;DOID:0060083,8.35e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0004211!4.01e-08!16;UBERON:0001285!4.01e-08!16;UBERON:0007684!4.01e-08!16;UBERON:0003220!4.01e-08!16;UBERON:0004208!4.01e-08!16;UBERON:0006555!1.66e-07!17;UBERON:0005103!1.66e-07!17;UBERON:0000083!1.66e-07!17;UBERON:0009201!1.66e-07!17;UBERON:0004819!1.66e-07!17;UBERON:0006553!1.66e-07!17;UBERON:0003074!1.66e-07!17;UBERON:0003060!1.66e-07!17;UBERON:0000080!5.76e-07!18;UBERON:0002120!5.76e-07!18;UBERON:0004875!5.76e-07!18;UBERON:0005721!5.76e-07!18;UBERON:0005754!5.76e-07!18;UBERON:0007297!5.76e-07!18;UBERON:0001851!5.93e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;4.62e-09;15!UBERON:0004819;4.62e-09;15!UBERON:0001285;4.62e-09;15!UBERON:0007684;4.62e-09;15!UBERON:0006554;2.55e-08;30!UBERON:0001008;2.55e-08;30!UBERON:0001851;8.64e-08;15!UBERON:0001225;2.69e-07;12!UBERON:0008987;2.69e-07;12!UBERON:0000490;4.23e-07;33!UBERON:0002113;6.82e-07;24!UBERON:0011143;6.82e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,5.27e-09,15;UBERON:0009773,5.27e-09,15;UBERON:0001231,5.27e-09,15;UBERON:0001285,5.27e-09,15;UBERON:0007684,5.27e-09,15;UBERON:0004208,5.27e-09,15;UBERON:0006555,2.74e-08,16;UBERON:0004819,2.74e-08,16;UBERON:0001851,1.02e-07,15;UBERON:0001225,2.92e-07,12;UBERON:0008987,2.92e-07,12 | |||
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| ||
|short_description=p5@SNRPA | |short_description=p5@SNRPA | ||
}} | }} |
Latest revision as of 02:57, 18 September 2015
Short description: | p5@SNRPA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SNRPA_5end |
Coexpression cluster: | C3793_iPS_testicular_Alveolar_Burkitt_transitionalcell_neuroblastoma_small |
Association with transcript: | 70bp_to_ENST00000545469_5end |
EntrezGene: | SNRPA |
HGNC: | 11151 |
UniProt: | B4DDC7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.76e-33 | 253 |
embryonic cell | 8.36e-15 | 250 |
epithelial cell of nephron | 5.27e-09 | 15 |
kidney cell | 6.47e-08 | 17 |
kidney epithelial cell | 6.47e-08 | 17 |
ectodermal cell | 1.06e-07 | 72 |
meso-epithelial cell | 1.27e-07 | 45 |
squamous epithelial cell | 1.64e-07 | 63 |
kidney cortical cell | 2.92e-07 | 12 |
renal cortical epithelial cell | 2.92e-07 | 12 |
endothelial cell | 5.78e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 5.27e-09 | 15 |
renal tubule | 5.27e-09 | 15 |
nephron tubule | 5.27e-09 | 15 |
nephron | 5.27e-09 | 15 |
uriniferous tubule | 5.27e-09 | 15 |
nephrogenic mesenchyme | 5.27e-09 | 15 |
excretory tube | 2.74e-08 | 16 |
kidney epithelium | 2.74e-08 | 16 |
cortex | 1.02e-07 | 15 |
cortex of kidney | 2.92e-07 | 12 |
renal parenchyma | 2.92e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
cancer | 7.41e-28 | 235 |
disease of cellular proliferation | 1.57e-26 | 239 |
cell type cancer | 2.12e-17 | 143 |
carcinoma | 2.85e-14 | 106 |
organ system cancer | 1.08e-11 | 137 |
germ cell and embryonal cancer | 9.01e-09 | 22 |
germ cell cancer | 9.01e-09 | 22 |
hematologic cancer | 8.35e-07 | 51 |
immune system cancer | 8.35e-07 | 51 |