FFCP PHASE1:Hg19::chr13:110853822..110853836,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:110853822..110853836,- | |||
|coexpression_cluster_id=C566 | |||
|description=CAGE_peak_at_chr13:110853822..110853836,- | |description=CAGE_peak_at_chr13:110853822..110853836,- | ||
|id=chr13:110853822..110853836,- | |id=chr13:110853822..110853836,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:1000746;1.81e-08;7!CL:1000612;1.81e-08;7!CL:0000349;5.20e-08;19!CL:0002615;5.63e-08;3!CL:0002188;7.05e-08;5!CL:0000115;9.50e-08;36!CL:0002541;4.68e-07;3!CL:0002548;8.61e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:1000746,1.80e-08,7;CL:1000612,1.80e-08,7;CL:0000115,3.87e-08,36;CL:0002615,4.09e-08,3;CL:0000349,4.85e-08,19;CL:0002188,7.33e-08,5;CL:0000213,1.38e-07,58;CL:0000215,1.38e-07,58;CL:0002541,4.32e-07,3;CL:0002078,6.19e-07,45;CL:0002548,9.59e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001009!7.38e-09!113;UBERON:0003914!1.33e-08!118;UBERON:0004535!1.88e-08!110;UBERON:0002049!2.02e-08!79;UBERON:0007798!2.02e-08!79;UBERON:0000477!2.65e-08!286;UBERON:0003103!5.64e-07!69;UBERON:0004872!6.48e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0000074;1.81e-08;7!UBERON:0001229;1.81e-08;7!UBERON:0003104;6.66e-08;7!UBERON:0009142;6.66e-08;7!UBERON:0000478;1.58e-07;24!UBERON:0003124;4.68e-07;3!UBERON:0000920;4.68e-07;3!UBERON:0003688;9.72e-07;6!UBERON:0002358;9.72e-07;6!UBERON:0003684;9.72e-07;6!UBERON:0001178;9.72e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010532,1.80e-08,7;UBERON:0000074,1.80e-08,7;UBERON:0001229,1.80e-08,7;UBERON:0001230,1.80e-08,7;UBERON:0003220,1.80e-08,7;UBERON:0005749,1.80e-08,7;UBERON:0004199,1.80e-08,7;UBERON:0004209,1.80e-08,7;UBERON:0004198,1.80e-08,7;UBERON:0000478,1.48e-07,24;UBERON:0004876,1.89e-07,11;UBERON:0005103,2.36e-07,8;UBERON:0000083,2.36e-07,8;UBERON:0009201,2.36e-07,8;UBERON:0006553,2.36e-07,8;UBERON:0003074,2.36e-07,8;UBERON:0003060,2.36e-07,8;UBERON:0000920,4.32e-07,3;UBERON:0003688,7.08e-07,6;UBERON:0002358,7.08e-07,6;UBERON:0003684,7.08e-07,6;UBERON:0001178,7.08e-07,6 | |||
|phase1_expression=0.363356758541113,5.1384125733836,1.9733616573436,2.00146596706261,3.5756887554183,2.61701557230111,0,0,2.61185628199839,0.737201809504527,0,0.218441372130172,0.527533956456907,0.123766352960047,0,1.34465029290355,0,0,0,0,0.408001382488506,0.626909442956176,0.286235987131057,0.273748850145768,1.75759695432724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0,0.50133791063589,0.724232594804119,0,0,0.0945348171640679,0.665188192387692,0.966182642624386,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,1.25849830862972,1.10047216776027,0.208994966536811,0.775250277507987,0.35576626268671,1.33888245105868,0.805658634218294,0,7.80998584154142,0,6.48113558305408,0.0892997282840798,0,0,0,0,0.732806975721629,0,0,0,1.98788780678127,0.633152558322899,0,0,0.354668382198357,0.560677600142307,2.1349799145941,7.64669400093196,0,2.96363478553314,1.14423332179421,2.57307626996383,2.30470369792,0,0.312160076830321,0,0,0.117434498643765,0,0,0,0,0.309977343527296,0,0.989067717114227,0,0,0,0,0,0,0.919463387397059,0.600952235626387,0.907457465280168,0.179389635688862,0,0.423863802319124,0.300091096084402,0,0.257640540045629,0.18611685633159,0.675105328965065,0.292311015483596,0.504867548488229,0,0,1.06502877754984,0.10075209822764,0,0,0.272746120590835,0,0,0.132529768321485,0.348581828608555,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0.354920400119532,0.168584690078102,0,0,0,0,0,0,0,0,2.80483547606892,0,2.94017422771084,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.469634776943287,2.30986316417718,1.85194205030644,2.09279567458058,0,0,0,0,0,0,0.503946384596579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285826432630578,0.224262168690721,0.87192013766656,0.4400297149257,0.775630294546667,0,1.690605505112,3.45719551560332,1.04007436911366,0,0,0.266422179016099,0.714889968290738,0,1.64648067356154,0,2.13235169245527,1.58390374586686,1.20575750823834,0,2.19940580600526,0,0,0,1.4377491329495,4.59447743336456,0,0.289562613335158,1.02738161275192,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07970861530807,1.24900292158013,0.630809660135739,0.35142424497814,0.300946099727719,2.27407504055985,1.03473071292505,0,0.368738337083406,0,1.76221041716467,2.05886054286514,0,0,0,0,0,0,0.496215615637554,0.767309866440312,1.68396056659844,0.512556597022804,0,2.73451665944133,1.48418066444991,0.308419387605311,0.177561725313127,0,0.519254429183621,0,0,1.80455823272956,0.0920809889358963,0.34444334449382,1.0925470080403,0.393373244878272,0,0.616122696835318,0.784349769176855,2.92278449306521,0.844413031143006,2.27466768141793,1.36074964221213,1.29549549661284,9.25363516141736,0.270946437543853,2.50844886927427,0,0,0.447749509444357,0,0,0,0,0,0.206082023295445,0,0,0,0,3.21367859688319,0,0.308097234229289,0.460511024178389,0,0,0.435050081742686,0.170453254832202,0.178064071293475,0,0.576570202095319,0.255225424989168,0,0,0.31481234683064,0,0,0,0,0,1.00187420719394,0.372158369359667,0.632758849437452,2.47819252100972,0,0.42793898803392,0,0,0.179872457583315,1.09814811894422,0.353437207037059,0.202182481573316,0,0,0,0.731140468893853,0,0,0.282810863907425,0,0,0,0.876901770507525,0,0,0.811641507850816,1.8589409885985,1.12678241012897,0.143411352204052,0.0982490410131212,0.7133421029625,0,0,0,0,0.349934720244983,0.0962221127255121,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,0,2.59022384726391,0,0,0.102268682502155,0,1.55519793830904,0,0,0,0.295930216910801,0,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0,0.448788222048861,0.217294743844016,1.5950057986596,1.64875668123352,1.06606955203727,0,0,0,0,0,0,0,0,1.89898258075224,0.652931232636591,0,0.216388639742091,0,0.0884575645033392,1.22206028986725,0,0.247127877893006,0.104421949505455,0,0,0,0,0,0,0.394584402849391,0,0.61214552326098,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0.677942222341597,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28929632425987,0,0.837847203816763,0.458320848023367,0,0.998395002494955,0.429226048136571,0,0.403100834920358,3.24269895188163,0,0,0,0,0.0984274815147488,0,0,0.136203406111576,0,0.137539436597234,0,0,0,0,0,0,0.314727528809989,0,0,0,0.714695326373367,0.662091970365432,0,1.08599920350743,0,0,0,0,0.170388021785422,0,0,1.32506888912221,0.258565912723101,0,0,0,0.213574825135389,0.157204305099666,0.414239055347196,0.496166021811951,0,0,0,0.544017803369474,0,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0.124192805882767,0.276697269872462,0,0,0,0.941063278792687,0,0,0.149254802886874,0.467426619694449,0,0,0,0,0.228840068396924,0.302461847526478,0.15543720058278,0,0.63718706865481,0,0.155262956876259,0,1.06336685823198,5.21745061811734,0.150257608997218,0.380805212168795,0.406870733204662,1.45478927362048,0.322231671127465,0.928067519756987,3.18476710958893,0.400027764663154,0,0,1.26184898228651,0,0,0.260994291965212,0.453411851024545,0,0.244736704506468,0,0.926404341482917,0,0,0.192914038270915,0,3.07489822305536,0,0,0,0,0,0,0.982829546539238,0.737318726261158,0,0.19998739585493,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0.954013051960256,0,0,1.05802783107205,0.918736432059601,0,0,0,0,0.252071696221718,0,0,0,0,0.11796972334774,0,0.115525666150338,0,0,0,0.300841313397029,0,0,0.261906694481422,0.49131575253029,0,0,0,0.413373593002368,0,0,0,0.992422356778588,0.351742488719241,0,0,0,0,0,0.443511850813194,0,0.171488009437418,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,1.29485767437579,0.102662806856247,1.1598144313382,2.91426595835484,0.233939463462106,0,0,0,0.109940516745429,0,0.0771741581079447,1.96703604453562,0,0.980593287015622,0,0.196308467114945,0,0.8453114551668,1.18948980281472,0.563903507879121,0.644578879735772,0,0,0,0,0,0,0,0,0,0,0,1.85997509083376,0,0,0.126166424835079,0.109265571963696,0,0,0,0,0.250707539292375,0,0,0,0,0.852935927603924,2.14257988317366,0.0645889098360061,0.124149428591716,0.224263725161227,0.25458863311266,0.404234377916439,0,1.71116650542641,0.0673520530145875,0.143444410785353,1.33064142618405,0.244209805832924,0.213454691755431,0,0,2.34640942403454,0.244482888365733,2.03448089157869,0.665756774185513,1.40891655513718,0 | |phase1_expression=0.363356758541113,5.1384125733836,1.9733616573436,2.00146596706261,3.5756887554183,2.61701557230111,0,0,2.61185628199839,0.737201809504527,0,0.218441372130172,0.527533956456907,0.123766352960047,0,1.34465029290355,0,0,0,0,0.408001382488506,0.626909442956176,0.286235987131057,0.273748850145768,1.75759695432724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0,0.50133791063589,0.724232594804119,0,0,0.0945348171640679,0.665188192387692,0.966182642624386,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,1.25849830862972,1.10047216776027,0.208994966536811,0.775250277507987,0.35576626268671,1.33888245105868,0.805658634218294,0,7.80998584154142,0,6.48113558305408,0.0892997282840798,0,0,0,0,0.732806975721629,0,0,0,1.98788780678127,0.633152558322899,0,0,0.354668382198357,0.560677600142307,2.1349799145941,7.64669400093196,0,2.96363478553314,1.14423332179421,2.57307626996383,2.30470369792,0,0.312160076830321,0,0,0.117434498643765,0,0,0,0,0.309977343527296,0,0.989067717114227,0,0,0,0,0,0,0.919463387397059,0.600952235626387,0.907457465280168,0.179389635688862,0,0.423863802319124,0.300091096084402,0,0.257640540045629,0.18611685633159,0.675105328965065,0.292311015483596,0.504867548488229,0,0,1.06502877754984,0.10075209822764,0,0,0.272746120590835,0,0,0.132529768321485,0.348581828608555,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0.354920400119532,0.168584690078102,0,0,0,0,0,0,0,0,2.80483547606892,0,2.94017422771084,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.469634776943287,2.30986316417718,1.85194205030644,2.09279567458058,0,0,0,0,0,0,0.503946384596579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285826432630578,0.224262168690721,0.87192013766656,0.4400297149257,0.775630294546667,0,1.690605505112,3.45719551560332,1.04007436911366,0,0,0.266422179016099,0.714889968290738,0,1.64648067356154,0,2.13235169245527,1.58390374586686,1.20575750823834,0,2.19940580600526,0,0,0,1.4377491329495,4.59447743336456,0,0.289562613335158,1.02738161275192,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07970861530807,1.24900292158013,0.630809660135739,0.35142424497814,0.300946099727719,2.27407504055985,1.03473071292505,0,0.368738337083406,0,1.76221041716467,2.05886054286514,0,0,0,0,0,0,0.496215615637554,0.767309866440312,1.68396056659844,0.512556597022804,0,2.73451665944133,1.48418066444991,0.308419387605311,0.177561725313127,0,0.519254429183621,0,0,1.80455823272956,0.0920809889358963,0.34444334449382,1.0925470080403,0.393373244878272,0,0.616122696835318,0.784349769176855,2.92278449306521,0.844413031143006,2.27466768141793,1.36074964221213,1.29549549661284,9.25363516141736,0.270946437543853,2.50844886927427,0,0,0.447749509444357,0,0,0,0,0,0.206082023295445,0,0,0,0,3.21367859688319,0,0.308097234229289,0.460511024178389,0,0,0.435050081742686,0.170453254832202,0.178064071293475,0,0.576570202095319,0.255225424989168,0,0,0.31481234683064,0,0,0,0,0,1.00187420719394,0.372158369359667,0.632758849437452,2.47819252100972,0,0.42793898803392,0,0,0.179872457583315,1.09814811894422,0.353437207037059,0.202182481573316,0,0,0,0.731140468893853,0,0,0.282810863907425,0,0,0,0.876901770507525,0,0,0.811641507850816,1.8589409885985,1.12678241012897,0.143411352204052,0.0982490410131212,0.7133421029625,0,0,0,0,0.349934720244983,0.0962221127255121,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,0,2.59022384726391,0,0,0.102268682502155,0,1.55519793830904,0,0,0,0.295930216910801,0,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0,0.448788222048861,0.217294743844016,1.5950057986596,1.64875668123352,1.06606955203727,0,0,0,0,0,0,0,0,1.89898258075224,0.652931232636591,0,0.216388639742091,0,0.0884575645033392,1.22206028986725,0,0.247127877893006,0.104421949505455,0,0,0,0,0,0,0.394584402849391,0,0.61214552326098,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0.677942222341597,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28929632425987,0,0.837847203816763,0.458320848023367,0,0.998395002494955,0.429226048136571,0,0.403100834920358,3.24269895188163,0,0,0,0,0.0984274815147488,0,0,0.136203406111576,0,0.137539436597234,0,0,0,0,0,0,0.314727528809989,0,0,0,0.714695326373367,0.662091970365432,0,1.08599920350743,0,0,0,0,0.170388021785422,0,0,1.32506888912221,0.258565912723101,0,0,0,0.213574825135389,0.157204305099666,0.414239055347196,0.496166021811951,0,0,0,0.544017803369474,0,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0.124192805882767,0.276697269872462,0,0,0,0.941063278792687,0,0,0.149254802886874,0.467426619694449,0,0,0,0,0.228840068396924,0.302461847526478,0.15543720058278,0,0.63718706865481,0,0.155262956876259,0,1.06336685823198,5.21745061811734,0.150257608997218,0.380805212168795,0.406870733204662,1.45478927362048,0.322231671127465,0.928067519756987,3.18476710958893,0.400027764663154,0,0,1.26184898228651,0,0,0.260994291965212,0.453411851024545,0,0.244736704506468,0,0.926404341482917,0,0,0.192914038270915,0,3.07489822305536,0,0,0,0,0,0,0.982829546539238,0.737318726261158,0,0.19998739585493,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0.954013051960256,0,0,1.05802783107205,0.918736432059601,0,0,0,0,0.252071696221718,0,0,0,0,0.11796972334774,0,0.115525666150338,0,0,0,0.300841313397029,0,0,0.261906694481422,0.49131575253029,0,0,0,0.413373593002368,0,0,0,0.992422356778588,0.351742488719241,0,0,0,0,0,0.443511850813194,0,0.171488009437418,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,1.29485767437579,0.102662806856247,1.1598144313382,2.91426595835484,0.233939463462106,0,0,0,0.109940516745429,0,0.0771741581079447,1.96703604453562,0,0.980593287015622,0,0.196308467114945,0,0.8453114551668,1.18948980281472,0.563903507879121,0.644578879735772,0,0,0,0,0,0,0,0,0,0,0,1.85997509083376,0,0,0.126166424835079,0.109265571963696,0,0,0,0,0.250707539292375,0,0,0,0,0.852935927603924,2.14257988317366,0.0645889098360061,0.124149428591716,0.224263725161227,0.25458863311266,0.404234377916439,0,1.71116650542641,0.0673520530145875,0.143444410785353,1.33064142618405,0.244209805832924,0.213454691755431,0,0,2.34640942403454,0.244482888365733,2.03448089157869,0.665756774185513,1.40891655513718,0 | ||
|short_description=p@chr13:110853822..110853836,- | |short_description=p@chr13:110853822..110853836,- | ||
}} | }} |
Latest revision as of 14:30, 24 July 2015
Short description: | p@chr13:110853822..110853836, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:110853822..110853836, - |
Coexpression cluster: | C566_Pericytes_Renal_hepatic_Fibroblast_Endothelial_Hepatic_Lens |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glomerular cell | 1.80e-08 | 7 |
kidney corpuscule cell | 1.80e-08 | 7 |
endothelial cell | 3.87e-08 | 36 |
adipocyte of omentum tissue | 4.09e-08 | 3 |
extraembryonic cell | 4.85e-08 | 19 |
glomerular endothelial cell | 7.33e-08 | 5 |
lining cell | 1.38e-07 | 58 |
barrier cell | 1.38e-07 | 58 |
chorionic membrane mesenchymal stem cell | 4.32e-07 | 3 |
meso-epithelial cell | 6.19e-07 | 45 |
cardiac fibroblast | 9.59e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
primitive nephron | 1.80e-08 | 7 |
renal glomerulus | 1.80e-08 | 7 |
renal corpuscle | 1.80e-08 | 7 |
glomerular capsule | 1.80e-08 | 7 |
metanephric mesenchyme | 1.80e-08 | 7 |
glomerular tuft | 1.80e-08 | 7 |
S-shaped body | 1.80e-08 | 7 |
renal vesicle | 1.80e-08 | 7 |
comma-shaped body | 1.80e-08 | 7 |
extraembryonic structure | 1.48e-07 | 24 |
urogenital ridge | 1.89e-07 | 11 |
mesonephric epithelium | 2.36e-07 | 8 |
mesonephric tubule | 2.36e-07 | 8 |
nephric duct | 2.36e-07 | 8 |
renal duct | 2.36e-07 | 8 |
mesonephric duct | 2.36e-07 | 8 |
pronephric duct | 2.36e-07 | 8 |
egg chorion | 4.32e-07 | 3 |
omentum | 7.08e-07 | 6 |
peritoneum | 7.08e-07 | 6 |
abdominal cavity | 7.08e-07 | 6 |
visceral peritoneum | 7.08e-07 | 6 |