FFCP PHASE1:Hg19::chr12:53298570..53298600,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3856 | |EntrezGene=3856 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6446 | |HGNC=6446 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=227bp_to_ENST00000550170_5end | |association_with_transcript=227bp_to_ENST00000550170_5end | ||
|cluster_id=chr12:53298570..53298600,- | |||
|coexpression_cluster_id=C819 | |||
|description=CAGE_peak_5_at_KRT8_5end | |description=CAGE_peak_5_at_KRT8_5end | ||
|id=chr12:53298570..53298600,- | |id=chr12:53298570..53298600,- | ||
|ontology_enrichment_celltype=CL:0000066!3.31e-47!254;CL:0000223!1.08e-14!59;CL:0000077!4.45e-13!19;CL:0002076!1.26e-09!43;CL:1000507!5.68e-07!12;CL:1000494!5.68e-07!12 | |ontology_enrichment_celltype=CL:0000066!3.31e-47!254;CL:0000223!1.08e-14!59;CL:0000077!4.45e-13!19;CL:0002076!1.26e-09!43;CL:1000507!5.68e-07!12;CL:1000494!5.68e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000077;5.13e-17;19!CL:0000349;1.86e-14;19!CL:1000507;1.49e-08;10!CL:1000494;1.49e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.38e-34,253;CL:0000077,7.33e-17,19;CL:0000349,1.43e-14,19;CL:0000223,1.56e-09,58;CL:1000507,1.41e-08,10;CL:1000494,1.41e-08,10;CL:1000449,9.88e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0008947;4.09e-07;29 | |||
|ontology_enrichment_disease=DOID:305!1.13e-32!106;DOID:0050687!4.77e-25!143;DOID:162!2.02e-16!235;DOID:14566!9.22e-16!239;DOID:299!9.31e-11!25 | |ontology_enrichment_disease=DOID:305!1.13e-32!106;DOID:0050687!4.77e-25!143;DOID:162!2.02e-16!235;DOID:14566!9.22e-16!239;DOID:299!9.31e-11!25 | ||
|ontology_enrichment_disease_v019=DOID:299;5.65e-11;25!DOID:305;6.58e-08;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.43e-21,106;DOID:0050687,2.12e-16,143;DOID:299,4.52e-11,25;DOID:162,8.11e-11,235;DOID:14566,3.21e-10,239 | |||
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|ontology_enrichment_uberon_v019=UBERON:0000478;1.18e-13;24!UBERON:0001737;1.33e-11;9!UBERON:0001557;1.33e-11;9!UBERON:0005631;2.69e-09;10!UBERON:0000158;2.69e-09;10!UBERON:0004211;1.49e-08;10!UBERON:0009773;1.49e-08;10!UBERON:0001231;1.49e-08;10!UBERON:0004810;1.49e-08;10!UBERON:0000072;5.22e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.68e-14,14;UBERON:0000158,5.68e-14,14;UBERON:0000478,8.78e-14,24;UBERON:0004921,4.37e-12,118;UBERON:0001737,1.16e-11,9;UBERON:0004119,4.09e-11,160;UBERON:0000925,4.09e-11,160;UBERON:0006595,4.09e-11,160;UBERON:0003124,1.02e-10,7;UBERON:0001041,1.46e-10,87;UBERON:0001007,1.97e-09,145;UBERON:0001555,1.97e-09,145;UBERON:0007026,1.97e-09,145;UBERON:0004810,1.41e-08,10;UBERON:0008947,1.46e-08,38;UBERON:0003258,1.46e-08,38;UBERON:0006554,3.87e-08,47;UBERON:0005177,4.08e-08,101;UBERON:0001008,7.49e-08,48;UBERON:0001048,2.25e-07,160;UBERON:0005172,2.97e-07,54;UBERON:0005173,2.97e-07,54;UBERON:0000072,7.08e-07,47;UBERON:0009569,8.65e-07,112;UBERON:0004211,9.88e-07,15;UBERON:0009773,9.88e-07,15;UBERON:0001231,9.88e-07,15;UBERON:0001285,9.88e-07,15;UBERON:0007684,9.88e-07,15;UBERON:0004208,9.88e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,9.58362352355885,43.2636724142905,5.02415155899396,6.59417445571134,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0,2.409647350226,5.9160641626686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.12786256184353,0,0,0,0,0.486634870302636,0.756278537312543,5.76496433402666,2.45937399940753,0.130979075497713,1.09288586487763,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,2.24271040056923,1.06748995729705,1.97334038733728,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453728732640084,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0.286804595389004,0.609868530647977,0.265059536642971,1.04574548582567,0.932949495138334,2.77552935963191,0,0,0,0,0,0,2.83936320095625,3.37169380156203,2.16909926895134,2.42646740011267,2.39667388501647,2.13543557199987,2.42696354688296,1.76599318612811,3.8474715694639,0,0,2.4694440679884,0,2.53510069643662,0.982827216677626,1.18157981336281,0,2.58275720940538,0.514703430895577,0.219500570817251,1.1240175325762,0,0.462942225792648,0,0,1.44331342025273,0.115930404975077,0.821860859650752,0,0,0,32.3983803163303,17.1697232418975,0,0,0,0,0.839910640994298,0.425325291727159,0.358234090811393,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42198887333556,0,0,0,0,0,0,0,0,1.62786481617433,1.64648067356154,0,0,2.37585561880029,1.20575750823834,5.22920075160176,5.59848750619519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391602314925481,0.343143423810856,0,0,0,3.63753085735511,3.32870879020994,6.35019615992329,0,0,0,0,0,0,0,0,0,0,0,0,3.62578348774867,6.41620704970512,0.184161977871793,0,0,0,1.35359883872224,1.30926073077505,3.13739907670742,5.84556898613043,0.211103257785751,0,0.170093705276516,0.215915916102139,0,0.812839312631559,5.51858751240339,4.58777291481069,9.97291210714469,2.91037181138832,0,0,0.512900250232778,3.28014645699706,0,0.412164046590889,0,0,0,2.60024098414608,0,0,0.154048617114644,0.15350367472613,0,0,0,0,0,0.661139661443912,0.192190067365106,0.127612712494584,0.50578890427775,0,0,0,0,0,0,0,0.143124886741991,0,0.316379424718726,2.2875623270859,0,0,0,0,0,1.09814811894422,0.353437207037059,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,1.01455188481352,2.16876448669825,6.76069446077379,0.860468113224309,0.589494246078727,1.07001315444375,0,0,0,0,0,0.0962221127255121,0.670302275535787,1.08890984861323,0.282431402330337,0.43050537267123,1.68471475667626,3.54744122829341,0,0,0,0,0,0,0,0,0,1.49553699578462,5.77487913158015,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,1.68426486367398,0,0,0,1.98895302764489,5.01363417949149,4.15750553165694,1.22864280839693,0,0,0.111308705022906,0,0.211125408127993,0,0.276283915531148,0,0,0,0,1.61763032065188,1.43216939740487,0,0.197286811273867,0,0,0,0,0,9.11497163798316,0.0874599999961957,0,1.137934482855,1.5255219017566,3.78220290828698,0,0,0,0,0,0,0,0,0,0,0.41827123283581,0.153900517007594,0.113942055847001,1.38338342632836,2.51321404347362,4.67183699264635,20.0970730631109,2.83952539545773,25.5856692488945,0,0,0,0.451191321234361,0.392125068635479,0.671286347903371,0.189753732724185,0,2.10998064528027,1.30586246527318,1.55488378577335,0,2.98578579323551,0.619202951523374,1.83309043480088,0,0,0,0,0,0,0,0.391329237864179,1.45668227720456,0.394584402849391,2.41981432097328,0,0,0.150323419414493,0.103688191397247,0,0.992975867626496,0.313932918407225,0,0.569219092059585,0,17.8766530485185,0.0979923974143777,0.522355239482415,0.52418000472609,0,2.80593360738347,0.877071805034227,1.88865551222381,0.387956065953678,0.264768380074501,0.225980740780532,0.685209623233754,0,0,1.95551382734803,0.801588202515337,1.92107695265417,17.3834360336453,1.58499458869517,0,0.686379991447858,0.14405479798815,0.248505071130865,0,0.135904206073614,0.313808538937,0,0,0,0,0,0,0,0,0.229160424011684,0,3.99358000997982,0.858452096273142,0.223171457441873,0,0,1.16495949527454,1.49688046383725,2.14281231791033,1.28066733322951,1.08270229666224,0,0,0,2.25054407851027,0.687697182986169,3.73896304226267,0,0,0,0,0.315222829196793,0.0524545881349981,0,0.896436696664224,0.191915197319445,0,0,1.27134268827375,0,0,0.326587360109409,1.19730191562487,0,0.340776043570843,0,0.293104467356165,0,0,0,1.36869470307464,0,0.320362237703084,0,0.414239055347196,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.58792401667989,0,1.59413131471908,0,0,0,0,0,0,0,0,0,0,0.477890301491107,0.449803112163605,1.08684069813382,0,0,0,1.05180326298053,10.6625459407263,0.406870733204662,0,1.93339002676479,0,0.398095888698616,0,0,0,0,0.770479321629213,2.78774068787403,1.82696004375648,5.66764813780681,18.058752997259,1.22368352253234,3.22359913946677,14.2048665694047,6.35923743778251,3.18040462702586,11.3819282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| ||
|short_description=p5@KRT8 | |short_description=p5@KRT8 | ||
}} | }} |
Latest revision as of 01:06, 19 September 2015
Short description: | p5@KRT8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_KRT8_5end |
Coexpression cluster: | C819_Alveolar_MCF7_mesothelioma_endometrioid_signet_Renal_gastric |
Association with transcript: | 227bp_to_ENST00000550170_5end |
EntrezGene: | KRT8 |
HGNC: | 6446 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.38e-34 | 253 |
mesothelial cell | 7.33e-17 | 19 |
extraembryonic cell | 1.43e-14 | 19 |
endodermal cell | 1.56e-09 | 58 |
kidney tubule cell | 1.41e-08 | 10 |
nephron tubule epithelial cell | 1.41e-08 | 10 |
epithelial cell of nephron | 9.88e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 5.68e-14 | 14 |
membranous layer | 5.68e-14 | 14 |
extraembryonic structure | 8.78e-14 | 24 |
subdivision of digestive tract | 4.37e-12 | 118 |
larynx | 1.16e-11 | 9 |
endoderm-derived structure | 4.09e-11 | 160 |
endoderm | 4.09e-11 | 160 |
presumptive endoderm | 4.09e-11 | 160 |
chorion | 1.02e-10 | 7 |
foregut | 1.46e-10 | 87 |
digestive system | 1.97e-09 | 145 |
digestive tract | 1.97e-09 | 145 |
primitive gut | 1.97e-09 | 145 |
nephron tubule epithelium | 1.41e-08 | 10 |
respiratory primordium | 1.46e-08 | 38 |
endoderm of foregut | 1.46e-08 | 38 |
urinary system structure | 3.87e-08 | 47 |
trunk region element | 4.08e-08 | 101 |
renal system | 7.49e-08 | 48 |
primordium | 2.25e-07 | 160 |
abdomen element | 2.97e-07 | 54 |
abdominal segment element | 2.97e-07 | 54 |
segment of respiratory tract | 7.08e-07 | 47 |
subdivision of trunk | 8.65e-07 | 112 |
nephron epithelium | 9.88e-07 | 15 |
renal tubule | 9.88e-07 | 15 |
nephron tubule | 9.88e-07 | 15 |
nephron | 9.88e-07 | 15 |
uriniferous tubule | 9.88e-07 | 15 |
nephrogenic mesenchyme | 9.88e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.43e-21 | 106 |
cell type cancer | 2.12e-16 | 143 |
adenocarcinoma | 4.52e-11 | 25 |
cancer | 8.11e-11 | 235 |
disease of cellular proliferation | 3.21e-10 | 239 |