FFCP PHASE1:Hg19::chr17:48149430..48149463,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3675 | |EntrezGene=3675 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6139 | |HGNC=6139 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-60bp_to_ENST00000510809_5end | |association_with_transcript=-60bp_to_ENST00000510809_5end | ||
|cluster_id=chr17:48149430..48149463,+ | |||
|coexpression_cluster_id=C3652 | |||
|description=CAGE_peak_5_at_ITGA3_5end | |description=CAGE_peak_5_at_ITGA3_5end | ||
|id=chr17:48149430..48149463,+ | |id=chr17:48149430..48149463,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.32e-27!254;CL:0000220!4.37e-21!246;CL:0002321!1.82e-20!248;CL:0002076!2.07e-11!43;CL:1000449!1.69e-10!16;CL:1000497!4.27e-10!18;CL:0002518!4.27e-10!18;CL:0000077!2.47e-09!19;CL:0002681!1.31e-08!13;CL:0002584!1.31e-08!13;CL:0000222!2.23e-08!119;CL:1000507!2.39e-08!12;CL:1000494!2.39e-08!12;CL:0000223!2.41e-08!59;CL:0000548!2.63e-08!679;CL:0000004!2.63e-08!679;CL:0000255!2.63e-08!679;CL:0000012!7.10e-08!682;CL:0000076!6.85e-07!62 | |ontology_enrichment_celltype=CL:0000066!2.32e-27!254;CL:0000220!4.37e-21!246;CL:0002321!1.82e-20!248;CL:0002076!2.07e-11!43;CL:1000449!1.69e-10!16;CL:1000497!4.27e-10!18;CL:0002518!4.27e-10!18;CL:0000077!2.47e-09!19;CL:0002681!1.31e-08!13;CL:0002584!1.31e-08!13;CL:0000222!2.23e-08!119;CL:1000507!2.39e-08!12;CL:1000494!2.39e-08!12;CL:0000223!2.41e-08!59;CL:0000548!2.63e-08!679;CL:0000004!2.63e-08!679;CL:0000255!2.63e-08!679;CL:0000012!7.10e-08!682;CL:0000076!6.85e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:1000497;1.86e-16;17!CL:0002518;1.86e-16;17!CL:1000449;2.58e-16;15!CL:1000507;3.27e-15;10!CL:1000494;3.27e-15;10!CL:0002681;2.20e-12;12!CL:0002584;2.20e-12;12!CL:0002076;1.49e-10;42!CL:0000077;3.67e-09;19!CL:0000244;1.22e-07;4!CL:0000731;1.22e-07;4!CL:0002368;1.37e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.77e-28,253;CL:1000497,7.29e-17,17;CL:0002518,7.29e-17,17;CL:1000449,1.04e-16,15;CL:1000507,1.30e-15,10;CL:1000494,1.30e-15,10;CL:0002076,3.29e-14,42;CL:0002321,8.01e-14,250;CL:0002681,1.18e-12,12;CL:0002584,1.18e-12,12;CL:0000223,8.70e-12,58;CL:0000077,2.38e-09,19;CL:0000076,4.91e-09,63;CL:0002368,1.07e-07,13;CL:0000244,1.35e-07,4;CL:0000731,1.35e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000223;4.64e-07;58 | |||
|ontology_enrichment_disease=DOID:193!1.28e-09!29;DOID:120!2.71e-09!27 | |||
|ontology_enrichment_disease_v019=DOID:193;9.63e-09;29!DOID:120;2.34e-08;27 | |||
|ontology_enrichment_disease_v019_2=DOID:193,9.53e-09,29;DOID:120,2.27e-08,27 | |||
|ontology_enrichment_uberon=UBERON:0000481!2.78e-11!347;UBERON:0005256!1.22e-10!143;UBERON:0004211!1.69e-10!16;UBERON:0001285!1.69e-10!16;UBERON:0007684!1.69e-10!16;UBERON:0003220!1.69e-10!16;UBERON:0004208!1.69e-10!16;UBERON:0003104!2.62e-10!238;UBERON:0009142!2.62e-10!238;UBERON:0006555!2.00e-09!17;UBERON:0005103!2.00e-09!17;UBERON:0000083!2.00e-09!17;UBERON:0009201!2.00e-09!17;UBERON:0004819!2.00e-09!17;UBERON:0006553!2.00e-09!17;UBERON:0003074!2.00e-09!17;UBERON:0003060!2.00e-09!17;UBERON:0000353!7.39e-09!17;UBERON:0000058!9.76e-09!26;UBERON:0001225!1.31e-08!13;UBERON:0008987!1.31e-08!13;UBERON:0000080!1.74e-08!18;UBERON:0002120!1.74e-08!18;UBERON:0004875!1.74e-08!18;UBERON:0005721!1.74e-08!18;UBERON:0005754!1.74e-08!18;UBERON:0007297!1.74e-08!18;UBERON:0009773!2.39e-08!12;UBERON:0001231!2.39e-08!12;UBERON:0004810!2.39e-08!12;UBERON:0000119!3.17e-08!312;UBERON:0004876!3.38e-08!20;UBERON:0000483!4.45e-08!309;UBERON:0000486!4.91e-08!82;UBERON:0006554!5.46e-08!44;UBERON:0001008!1.51e-07!45;UBERON:0002100!1.93e-07!216;UBERON:0001851!2.27e-07!16;UBERON:0003887!2.56e-07!21;UBERON:0003064!4.65e-07!37;UBERON:0005085!6.47e-07!29;UBERON:0000475!7.64e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;2.58e-16;15!UBERON:0004819;2.58e-16;15!UBERON:0001285;2.58e-16;15!UBERON:0007684;2.58e-16;15!UBERON:0004211;3.27e-15;10!UBERON:0009773;3.27e-15;10!UBERON:0001231;3.27e-15;10!UBERON:0004810;3.27e-15;10!UBERON:0006554;6.60e-14;30!UBERON:0001008;6.60e-14;30!UBERON:0000353;1.09e-13;15!UBERON:0001225;2.20e-12;12!UBERON:0008987;2.20e-12;12!UBERON:0002113;1.61e-10;24!UBERON:0011143;1.61e-10;24!UBERON:0001851;2.03e-09;15!UBERON:0000489;4.46e-08;29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.04e-16,15;UBERON:0009773,1.04e-16,15;UBERON:0001231,1.04e-16,15;UBERON:0001285,1.04e-16,15;UBERON:0007684,1.04e-16,15;UBERON:0004208,1.04e-16,15;UBERON:0004810,1.30e-15,10;UBERON:0006555,1.97e-15,16;UBERON:0004819,1.97e-15,16;UBERON:0000353,4.17e-14,15;UBERON:0001225,1.18e-12,12;UBERON:0008987,1.18e-12,12;UBERON:0006554,1.33e-10,47;UBERON:0001008,2.93e-10,48;UBERON:0002113,1.14e-09,26;UBERON:0003918,1.14e-09,26;UBERON:0011143,1.14e-09,26;UBERON:0005095,1.14e-09,26;UBERON:0007687,1.14e-09,26;UBERON:0001851,1.26e-09,15;UBERON:0000489,1.59e-07,31 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0.872338524100369,0,0,0,0.491467873003018,3.48900583986214,0,0.791300934685361,0.495065411840187,0.662794751455832,0,2.41077811209591,2.19093027116212,0.975865597581014,0.246242116153576,0.816002764977012,0,0.286235987131057,2.6006140763848,0.627713197974014,0,0,0,0,0,0,1.83884244895785,3.0120591877825,7.02532619316897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0.361439152384566,0.50133791063589,0.144846518960824,0.795285947051099,0,0.567208902984407,0.886917589850256,0.527008714158756,0.0654895377488563,1.45718115317017,1.85392221392215,0,0,0.398873881556595,0,0,0,0,0,0,0.56530794192401,0,1.37559020970034,0,0.258416759169329,0,0,0.402829317109147,0,0,0,3.24056779152704,0.17859945656816,0,0,0,0,0,0,0,0.436094052142534,0,0.759783069987479,0,0.573673241497627,0,0,1.06748995729705,2.22000793575444,0,1.21239604862719,0,0,0,0,0.624320153660641,0,0.448346041655403,0.23486899728753,0.323745888736263,0.280901613404497,0,1.22834317311768,0.103325781175765,0,0.247266929278557,0,0,0.336672227908132,0.250237039743928,0,0,0.30648779579902,0,0.453728732640084,1.4351170855109,0,0,1.80054657650641,0.103052529238439,1.03056216018252,0.37223371266318,0.168776332241266,0.292311015483596,0,0.184099797284599,0.161646056818812,0.710019185033229,0.403008392910561,1.01736355386293,0.386521706326594,1.09098448236334,0.286804595389004,0,0,0,0,0,0,1.56449532329816,3.85944562915731,4.14404764057442,0.928735856063958,1.44375896333917,0.473227200159376,1.01150814046861,0.241011029883482,1.10293972732394,0.435758888184812,0.237270619111097,0.269662616320329,0.196221465125346,1.15424147083917,0,2.80483547606892,0.4115740113314,0,0,0,0,0,0,0.686271241194102,3.51200913307602,0,1.70899253099772,2.68506490959736,0,0,1.44331342025273,0.463721619900307,0.352226082707465,0.433099343283221,0.462985512576611,0.761016608938393,0.790204397959275,0.858486162094873,0,0,0,0,1.17587489739202,1.27597587518148,2.14940454486836,1.74380363108377,2.68367875415648,0,0,0.207328115540772,0.288239906833923,0,0.126995788584338,0,0,0,0.719792448923265,1.8020583470635,0.285826432630578,0.672786506072164,0,0.36669142910475,0.517086863031111,0,0,0.26593811658487,1.04007436911366,0.257207374262142,1.41849132023278,0.532844358032199,0.57191197463259,0,0,0,0,0,2.41151501647669,0.871533458600294,1.3996218765488,0,0,2.10833939483032,2.87549826589899,0,0,0.434343920002738,3.6985738059069,0.537182889719687,0,0,0,0,0.254094624222463,0,0,0.502548796003046,1.27587750330633,0,0,0,0,2.00068208423871,1.62759014219841,2.07970861530807,2.49800584316026,1.26161932027148,0.234282829985426,0.300946099727719,0,0,0.664225598535437,0.184369168541703,0.0868836144680828,0.783204629850962,0.686286847621712,0,0,0,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0,0,0.308419387605311,0.177561725313127,0,1.03850885836724,0.116210378459959,0,4.81215528727884,3.22283461275637,0,0.364182336013434,0,1.35359883872224,2.0794141018192,1.56869953835371,2.92278449306521,2.11103257785751,2.27466768141793,0.850468526382578,0.647747748306418,1.54227252690289,1.62567862526312,4.51520796469368,1.78413391131527,2.49322802678617,3.58199607555485,0,0,0.512900250232778,0.984043937099117,2.27764876265012,0.618246069886334,0.0915694648183434,0.082509499920588,0.574265537996172,2.60024098414608,1.6068392984416,0,0.770243085573222,0.460511024178389,0.413509717453592,0.107420244868274,0.145016693914229,0.340906509664404,0.0890320356467374,3.63626813794152,2.30628080838127,0.638063562472921,1.51736671283325,0.464845549297286,0.94443704049192,0.6970372701606,0.308033580176089,0,0,0.55597265731176,0.715624433709956,0.372158369359667,0.632758849437452,0.571890581771475,0.767693373934002,0.42793898803392,0,0,0.719489830333259,0.274537029736055,0.235624804691373,0.404364963146632,0,0,0,0.731140468893853,1.05650146756755,0,0.141405431953713,0,0.551365343546124,0.66343897524122,1.31535265576129,0,0,0.202910376962704,1.239293992399,0.281695602532241,0.143411352204052,0.0982490410131212,0.7133421029625,0.709522128141196,0.422215270595328,0,0,0,0.384888450902048,4.02181365321472,2.17781969722645,0.376575203107117,2.15252686335615,5.05414427002877,4.43430153536676,1.37834040124176,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0.293016358543788,0,0,0,0.23874448473769,0,0.307160702099232,0,0.140669416410513,0.890469640183247,0.329607748453519,0,0.796991953004279,0.276283915531148,0,0.20453736500431,0,0.311039587661807,0.539210106883961,0.179021174675609,0,0.394573622547734,0,0,0.969332746095218,0.0927680981618513,0,0,0,0,0.796554137998498,0,0,0,0,0,0,0,0,0,0,0,0,0.557694977114413,0.153900517007594,1.59518878185802,0,0,0,0.31900115973192,0.457987967009312,0.533034776018635,0,0,0,0,0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| ||
|short_description=p5@ITGA3 | |short_description=p5@ITGA3 | ||
}} | }} |
Latest revision as of 22:26, 15 September 2015
Short description: | p5@ITGA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ITGA3_5end |
Coexpression cluster: | C3652_Bronchial_meningioma_papillary_Prostate_mesenchymal_Tracheal_Urothelial |
Association with transcript: | -60bp_to_ENST00000510809_5end |
EntrezGene: | ITGA3 |
HGNC: | 6139 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.77e-28 | 253 |
kidney cell | 7.29e-17 | 17 |
kidney epithelial cell | 7.29e-17 | 17 |
epithelial cell of nephron | 1.04e-16 | 15 |
kidney tubule cell | 1.30e-15 | 10 |
nephron tubule epithelial cell | 1.30e-15 | 10 |
endo-epithelial cell | 3.29e-14 | 42 |
embryonic cell | 8.01e-14 | 250 |
kidney cortical cell | 1.18e-12 | 12 |
renal cortical epithelial cell | 1.18e-12 | 12 |
endodermal cell | 8.70e-12 | 58 |
mesothelial cell | 2.38e-09 | 19 |
squamous epithelial cell | 4.91e-09 | 63 |
respiratory epithelial cell | 1.07e-07 | 13 |
transitional epithelial cell | 1.35e-07 | 4 |
urothelial cell | 1.35e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 1.04e-16 | 15 |
renal tubule | 1.04e-16 | 15 |
nephron tubule | 1.04e-16 | 15 |
nephron | 1.04e-16 | 15 |
uriniferous tubule | 1.04e-16 | 15 |
nephrogenic mesenchyme | 1.04e-16 | 15 |
nephron tubule epithelium | 1.30e-15 | 10 |
excretory tube | 1.97e-15 | 16 |
kidney epithelium | 1.97e-15 | 16 |
parenchyma | 4.17e-14 | 15 |
cortex of kidney | 1.18e-12 | 12 |
renal parenchyma | 1.18e-12 | 12 |
urinary system structure | 1.33e-10 | 47 |
renal system | 2.93e-10 | 48 |
kidney | 1.14e-09 | 26 |
kidney mesenchyme | 1.14e-09 | 26 |
upper urinary tract | 1.14e-09 | 26 |
kidney rudiment | 1.14e-09 | 26 |
kidney field | 1.14e-09 | 26 |
cortex | 1.26e-09 | 15 |
cavitated compound organ | 1.59e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
reproductive organ cancer | 9.53e-09 | 29 |
female reproductive organ cancer | 2.27e-08 | 27 |