FFCP PHASE1:Mm9::chr5:109058705..109058726,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=231580 | |EntrezGene=231580 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=993 | |||
|TSSclassifier=NA | |||
|UniProt=Q99KY4,E9QNB4,D6RHK5,Q3UIZ0,Q3UDE5 | |UniProt=Q99KY4,E9QNB4,D6RHK5,Q3UIZ0,Q3UDE5 | ||
|association_with_transcript=31bp_to_ENSMUST00000046603,ENSMUST00000112579,ENSMUST00000135225,ENSMUST00000145467,NM_153569,uc008yoh.1,uc008yoi.1,uc008yoj.1,uc008yok.1,uc008yol.1_5end | |association_with_transcript=31bp_to_ENSMUST00000046603,ENSMUST00000112579,ENSMUST00000135225,ENSMUST00000145467,NM_153569,uc008yoh.1,uc008yoi.1,uc008yoj.1,uc008yok.1,uc008yol.1_5end | ||
|cluster_id=chr5:109058705..109058726,- | |||
|description=CAGE_peak_2_at_Gak_5end | |description=CAGE_peak_2_at_Gak_5end | ||
|id=chr5:109058705..109058726,- | |id=chr5:109058705..109058726,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000064!4.31e-12!99;UBERON:0006562!2.68e-10!24;UBERON:0001557!2.68e-10!24;UBERON:0001042!2.68e-10!24;UBERON:0008814!2.68e-10!24;UBERON:0009145!2.68e-10!24;UBERON:0002370!4.44e-10!23;UBERON:0000974!4.44e-10!23;UBERON:0004807!4.44e-10!23;UBERON:0005058!4.44e-10!23;UBERON:0003351!4.44e-10!23;UBERON:0009113!4.44e-10!23;UBERON:0003295!4.44e-10!23;UBERON:0009722!4.44e-10!23;UBERON:0005562!4.44e-10!23;UBERON:0007690!4.44e-10!23;UBERON:0003408!6.65e-10!24;UBERON:0000072!8.41e-08!27;UBERON:0000063!1.06e-07!35;UBERON:0000344!2.05e-07!15;UBERON:0004177!2.53e-07!29;UBERON:0004119!8.39e-07!130;UBERON:0000925!8.39e-07!130;UBERON:0006595!8.39e-07!130;UBERON:0001242!8.95e-07!13;UBERON:0000060!8.95e-07!13;UBERON:0001262!8.95e-07!13;UBERON:0004786!8.95e-07!13 | |ontology_enrichment_uberon=UBERON:0000064!4.31e-12!99;UBERON:0006562!2.68e-10!24;UBERON:0001557!2.68e-10!24;UBERON:0001042!2.68e-10!24;UBERON:0008814!2.68e-10!24;UBERON:0009145!2.68e-10!24;UBERON:0002370!4.44e-10!23;UBERON:0000974!4.44e-10!23;UBERON:0004807!4.44e-10!23;UBERON:0005058!4.44e-10!23;UBERON:0003351!4.44e-10!23;UBERON:0009113!4.44e-10!23;UBERON:0003295!4.44e-10!23;UBERON:0009722!4.44e-10!23;UBERON:0005562!4.44e-10!23;UBERON:0007690!4.44e-10!23;UBERON:0003408!6.65e-10!24;UBERON:0000072!8.41e-08!27;UBERON:0000063!1.06e-07!35;UBERON:0000344!2.05e-07!15;UBERON:0004177!2.53e-07!29;UBERON:0004119!8.39e-07!130;UBERON:0000925!8.39e-07!130;UBERON:0006595!8.39e-07!130;UBERON:0001242!8.95e-07!13;UBERON:0000060!8.95e-07!13;UBERON:0001262!8.95e-07!13;UBERON:0004786!8.95e-07!13 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,8.31e-11,31;UBERON:0006562,2.68e-10,24;UBERON:0001557,2.68e-10,24;UBERON:0001042,2.68e-10,24;UBERON:0008814,2.68e-10,24;UBERON:0009145,2.68e-10,24;UBERON:0002370,4.44e-10,23;UBERON:0000974,4.44e-10,23;UBERON:0004807,4.44e-10,23;UBERON:0005058,4.44e-10,23;UBERON:0003351,4.44e-10,23;UBERON:0009113,4.44e-10,23;UBERON:0003295,4.44e-10,23;UBERON:0009722,4.44e-10,23;UBERON:0005562,4.44e-10,23;UBERON:0007690,4.44e-10,23;UBERON:0003408,6.65e-10,24;UBERON:0004119,2.25e-08,118;UBERON:0000925,2.25e-08,118;UBERON:0006595,2.25e-08,118;UBERON:0005409,5.93e-08,47;UBERON:0000072,8.41e-08,27;UBERON:0001007,8.77e-08,116;UBERON:0001555,8.77e-08,116;UBERON:0007026,8.77e-08,116;UBERON:0000077,1.16e-07,35;UBERON:0000344,2.05e-07,15;UBERON:0004177,2.53e-07,29;UBERON:0005057,2.53e-07,29;UBERON:0004921,2.96e-07,114;UBERON:0001242,8.95e-07,13;UBERON:0001262,8.95e-07,13;UBERON:0004786,8.95e-07,13 | |||
|phase1_expression=3.36312578920067,36.6424178021329,38.6749353481106,49.6041306543201,60.608383323508,16.1164101035414,17.9881733258555,14.8491821957813,36.6050677594334,45.6425826327887,10.6155140299813,8.21653237651965,21.7424927012631,24.1280310676433,5.3297561890506,6.47920855647443,2.79824751251259,7.5710919685977,10.2835825204304,8.06340338416257,6.03807360072595,14.3971879241284,8.61959304158487,15.1992801653736,14.2233754261645,38.4735415957064,29.2918157388171,23.7018355954478,15.9619672343354,17.8941392129551,16.8515188098032,8.89042942843484,6.76571266343027,0,8.95440021228951,8.97667084935859,10.2084678131185,17.996860121687,14.8453715459522,10.470474879476,18.2351761289614,12.294818729252,16.0218416500281,4.53228544712078,3.54819259268301,4.9557623083654,9.38869613217647,2.8343270329458,7.0299578475031,7.38833616482277,7.41928034614421,4.31257693094915,11.9125650300993,26.8383992544197,41.6756310936655,7.97504251711436,6.01720223871389,6.18806510732931,8.09265843438391,4.23192783417626,6.33831403506179,4.40497891689872,14.2287167377782,12.1486461832989,6.92206453796882,10.6572017241915,5.09320187881288,4.99483796918021,6.84351441235953,6.88530285491622,5.46844899513593,6.28432165688368,8.39300455616131,4.77714116938321,4.02550978276593,11.9498442259303,3.30347642998166,6.63974158042976,5.68344173048101,5.01167893374737,5.39777097254217,6.25096044668112,5.30447698102624,3.93933827022176,4.12555268997387,6.18720029494702,6.54909731675874,5.96478226640962,3.3319525066601,6.57472572929034,9.27566363845369,6.0229671388697,4.75979933595425,1.07940638327563,9.74664626171504,4.92829575807069,5.75822122540183,4.26075806445144,2.07828803682295,3.88673531961374,3.66192891419369,8.98285341900225,10.1922095882658,7.11066703153331,6.27824018932521,4.30711771307668,3.0331466700887,10.5049169341535,12.9468941823586,4.15637989381509,5.03107447621794,4.56698217468212,4.15107895060905,4.06951129492081,4.35078216402108,3.64433114856059,15.5732829672656,5.92857363371638,6.19227386364912,5.66183974815932,6.18356251689102,11.6370060752453,14.9113408974498,7.90508151931177,10.2628886338593,16.0937944781413,11.5022519525683,5.99902730993408,13.9777249780371,5.69204429738326,10.0650132620098,8.04187853522332,13.0368240144207,17.1329356411321,6.2336413367868,7.13861557498134,6.00852246716866,7.2156042953854,5.30717792710717,8.41767423545896,4.81445638962004,2.75882525320168,4.86167750474443,4.82255417074288,5.44291993210623,5.63700369253339,5.528401749024,3.3631438196072,6.46703978798527,5.29497024469894,6.15828934573821,4.3839146485515,5.83899223373756,12.1888258282758,11.3180175024369,4.37875387000685,11.937624184325,7.97778512055617,10.2298859782413,6.00664740352955,6.3322036194896,3.96136535214233,3.31442629819294,2.55793501271625,4.31947916084659,3.48800917125612,2.68273401399619,4.43708300995244,2.63295759861569,4.43252153013557,5.26947262048062,4.23979963533464,3.73235195994786,5.90508242545636,12.6173969138476,8.33527360272204,31.7202031664446,19.5693419331023,3.83918850963421,5.80591679651096,8.11865006329188,11.2942773789072,11.5636582799333,17.8812088545806,19.455691523325,15.152303834609,17.0907941984183,16.1154742353332,15.9870551437679,16.178749355776,20.1008386383466,21.3081162382173,7.77638393907635,4.11294645395024,7.88954149711563,5.29493452397817,4.26695471768777,6.17195215034803,7.08249215791682,7.97094799089852,9.26292494264111,9.37818445805684,7.11486305009157,4.00428253718626,6.09332884850929,4.72210436008193,5.07150303471257,3.37648023653384,6.11102044275408,4.60313819921297,7.13394997810156,4.3929826110093,7.18841032636773,7.07067800570156,5.61667811606209,5.80931419278357,4.12614051100398,13.0259750768109,6.46636165583116,6.44270800019648,7.00749398700711,4.75286240170527,5.86725620721255,6.19773152534718,5.47500374037832,11.7080188714679,6.77831119656621,7.9727288273559,6.85655505227195,7.53771247692395,6.21665934717224,8.38964539772767,9.04747703635634,9.79030230873677,35.4070276573706,17.6599517635029,7.38532713943843,9.96299336033727,8.0328123234571,3.53459298086122,7.57219726599016,5.46614242015294,6.46270193198397,8.36390792833932,7.35235624471901,6.79383673893198,6.47697122679831,7.59865230569411,9.88219444866309,4.17717711348349,8.09058485687131,5.1639025063504,4.39794790254655,9.07335676348945,3.98235415019888,6.79785781233948,5.13950046840077,5.09233715340925,4.13422650033082,7.99331384654211,14.2135561242522,4.36240475373007,6.41695281092498,6.32073515871632,6.32511651449993,9.28219889233682,2.7235168460303,4.86164953884538,4.39819524861365,4.71541477069503,4.25616560741457,5.88617098086833,5.26556865926787,6.08929898229199,14.0803024838226,17.1583977399694,5.95426674748397,17.4779428117969,20.1830533369882,14.2338502830448,13.8471919043638,22.8155850645635,14.2825609948627,8.34413859047294,9.05615668228619,7.22354037871279,5.37064129372164,2.26042148405629,9.97867862363484,4.34678529092393,15.1280802694531,16.2343684695443,15.7547970137043,7.63736494412091,3.95419991976419,4.47302827679067,6.37231510848627,6.06356058441959,12.4466661335321,12.2726555210187,11.571483801547,15.4436005770577,26.4414545515257,8.07741107013003,2.25477175473676,4.33597983527538,3.64008679005615,4.86127970860119,5.16639293910924,4.73077151374179,3.75543163666413,4.29674469985035,5.87212328783981,2.17425708743405,2.30424005006292,28.7570119771642,10.9471616256689,10.9900724166365,16.1101820492466,15.2172691317359,21.4575863163766,21.0342036659945,24.2210824566307,21.1019880391629,27.0534163625249,22.786717840926,26.9958329649114,30.2105182750634,34.0111785348366,12.0167103316062,6.65957860122194,10.7656627931371,12.4234616109418,5.79568782096571,9.3841237725591,14.2858266928467,16.291996810009,5.517293144389,12.9892923801925,7.82552902062201,15.4681788628637,16.8416118696814,10.2762377965596,11.3309084608455,8.10027000278167,9.00642406448441,13.1411298605419,11.39072685854,4.77421798887213,7.58147259461959,4.95127456686989,5.34834777550247,4.61148957781561,8.82448840560068,7.55638874525492,7.2112270033613,5.45562656306086,6.82282471762253,10.3926512954998,6.79054828989874,7.49132059759059,8.19521950782327,8.44301393647515,8.57328644309533,6.60540657885676,8.68091492086673,9.47797571847605,7.94874168725746,5.82877729055206,8.5188386956482,5.7224685587357,7.70336008151341,8.46984423737976,8.46146078916765,8.23175877927476,7.89209134313529,8.14824683075171,7.2948495315506,8.18581625056802,8.27437651954733,6.13846564754534,8.6764631064141,8.68079749415136,11.2414760072076,10.7608539884888,11.6030369186081,7.07766828654721,7.72069966918304,4.86922454802885 | |phase1_expression=3.36312578920067,36.6424178021329,38.6749353481106,49.6041306543201,60.608383323508,16.1164101035414,17.9881733258555,14.8491821957813,36.6050677594334,45.6425826327887,10.6155140299813,8.21653237651965,21.7424927012631,24.1280310676433,5.3297561890506,6.47920855647443,2.79824751251259,7.5710919685977,10.2835825204304,8.06340338416257,6.03807360072595,14.3971879241284,8.61959304158487,15.1992801653736,14.2233754261645,38.4735415957064,29.2918157388171,23.7018355954478,15.9619672343354,17.8941392129551,16.8515188098032,8.89042942843484,6.76571266343027,0,8.95440021228951,8.97667084935859,10.2084678131185,17.996860121687,14.8453715459522,10.470474879476,18.2351761289614,12.294818729252,16.0218416500281,4.53228544712078,3.54819259268301,4.9557623083654,9.38869613217647,2.8343270329458,7.0299578475031,7.38833616482277,7.41928034614421,4.31257693094915,11.9125650300993,26.8383992544197,41.6756310936655,7.97504251711436,6.01720223871389,6.18806510732931,8.09265843438391,4.23192783417626,6.33831403506179,4.40497891689872,14.2287167377782,12.1486461832989,6.92206453796882,10.6572017241915,5.09320187881288,4.99483796918021,6.84351441235953,6.88530285491622,5.46844899513593,6.28432165688368,8.39300455616131,4.77714116938321,4.02550978276593,11.9498442259303,3.30347642998166,6.63974158042976,5.68344173048101,5.01167893374737,5.39777097254217,6.25096044668112,5.30447698102624,3.93933827022176,4.12555268997387,6.18720029494702,6.54909731675874,5.96478226640962,3.3319525066601,6.57472572929034,9.27566363845369,6.0229671388697,4.75979933595425,1.07940638327563,9.74664626171504,4.92829575807069,5.75822122540183,4.26075806445144,2.07828803682295,3.88673531961374,3.66192891419369,8.98285341900225,10.1922095882658,7.11066703153331,6.27824018932521,4.30711771307668,3.0331466700887,10.5049169341535,12.9468941823586,4.15637989381509,5.03107447621794,4.56698217468212,4.15107895060905,4.06951129492081,4.35078216402108,3.64433114856059,15.5732829672656,5.92857363371638,6.19227386364912,5.66183974815932,6.18356251689102,11.6370060752453,14.9113408974498,7.90508151931177,10.2628886338593,16.0937944781413,11.5022519525683,5.99902730993408,13.9777249780371,5.69204429738326,10.0650132620098,8.04187853522332,13.0368240144207,17.1329356411321,6.2336413367868,7.13861557498134,6.00852246716866,7.2156042953854,5.30717792710717,8.41767423545896,4.81445638962004,2.75882525320168,4.86167750474443,4.82255417074288,5.44291993210623,5.63700369253339,5.528401749024,3.3631438196072,6.46703978798527,5.29497024469894,6.15828934573821,4.3839146485515,5.83899223373756,12.1888258282758,11.3180175024369,4.37875387000685,11.937624184325,7.97778512055617,10.2298859782413,6.00664740352955,6.3322036194896,3.96136535214233,3.31442629819294,2.55793501271625,4.31947916084659,3.48800917125612,2.68273401399619,4.43708300995244,2.63295759861569,4.43252153013557,5.26947262048062,4.23979963533464,3.73235195994786,5.90508242545636,12.6173969138476,8.33527360272204,31.7202031664446,19.5693419331023,3.83918850963421,5.80591679651096,8.11865006329188,11.2942773789072,11.5636582799333,17.8812088545806,19.455691523325,15.152303834609,17.0907941984183,16.1154742353332,15.9870551437679,16.178749355776,20.1008386383466,21.3081162382173,7.77638393907635,4.11294645395024,7.88954149711563,5.29493452397817,4.26695471768777,6.17195215034803,7.08249215791682,7.97094799089852,9.26292494264111,9.37818445805684,7.11486305009157,4.00428253718626,6.09332884850929,4.72210436008193,5.07150303471257,3.37648023653384,6.11102044275408,4.60313819921297,7.13394997810156,4.3929826110093,7.18841032636773,7.07067800570156,5.61667811606209,5.80931419278357,4.12614051100398,13.0259750768109,6.46636165583116,6.44270800019648,7.00749398700711,4.75286240170527,5.86725620721255,6.19773152534718,5.47500374037832,11.7080188714679,6.77831119656621,7.9727288273559,6.85655505227195,7.53771247692395,6.21665934717224,8.38964539772767,9.04747703635634,9.79030230873677,35.4070276573706,17.6599517635029,7.38532713943843,9.96299336033727,8.0328123234571,3.53459298086122,7.57219726599016,5.46614242015294,6.46270193198397,8.36390792833932,7.35235624471901,6.79383673893198,6.47697122679831,7.59865230569411,9.88219444866309,4.17717711348349,8.09058485687131,5.1639025063504,4.39794790254655,9.07335676348945,3.98235415019888,6.79785781233948,5.13950046840077,5.09233715340925,4.13422650033082,7.99331384654211,14.2135561242522,4.36240475373007,6.41695281092498,6.32073515871632,6.32511651449993,9.28219889233682,2.7235168460303,4.86164953884538,4.39819524861365,4.71541477069503,4.25616560741457,5.88617098086833,5.26556865926787,6.08929898229199,14.0803024838226,17.1583977399694,5.95426674748397,17.4779428117969,20.1830533369882,14.2338502830448,13.8471919043638,22.8155850645635,14.2825609948627,8.34413859047294,9.05615668228619,7.22354037871279,5.37064129372164,2.26042148405629,9.97867862363484,4.34678529092393,15.1280802694531,16.2343684695443,15.7547970137043,7.63736494412091,3.95419991976419,4.47302827679067,6.37231510848627,6.06356058441959,12.4466661335321,12.2726555210187,11.571483801547,15.4436005770577,26.4414545515257,8.07741107013003,2.25477175473676,4.33597983527538,3.64008679005615,4.86127970860119,5.16639293910924,4.73077151374179,3.75543163666413,4.29674469985035,5.87212328783981,2.17425708743405,2.30424005006292,28.7570119771642,10.9471616256689,10.9900724166365,16.1101820492466,15.2172691317359,21.4575863163766,21.0342036659945,24.2210824566307,21.1019880391629,27.0534163625249,22.786717840926,26.9958329649114,30.2105182750634,34.0111785348366,12.0167103316062,6.65957860122194,10.7656627931371,12.4234616109418,5.79568782096571,9.3841237725591,14.2858266928467,16.291996810009,5.517293144389,12.9892923801925,7.82552902062201,15.4681788628637,16.8416118696814,10.2762377965596,11.3309084608455,8.10027000278167,9.00642406448441,13.1411298605419,11.39072685854,4.77421798887213,7.58147259461959,4.95127456686989,5.34834777550247,4.61148957781561,8.82448840560068,7.55638874525492,7.2112270033613,5.45562656306086,6.82282471762253,10.3926512954998,6.79054828989874,7.49132059759059,8.19521950782327,8.44301393647515,8.57328644309533,6.60540657885676,8.68091492086673,9.47797571847605,7.94874168725746,5.82877729055206,8.5188386956482,5.7224685587357,7.70336008151341,8.46984423737976,8.46146078916765,8.23175877927476,7.89209134313529,8.14824683075171,7.2948495315506,8.18581625056802,8.27437651954733,6.13846564754534,8.6764631064141,8.68079749415136,11.2414760072076,10.7608539884888,11.6030369186081,7.07766828654721,7.72069966918304,4.86922454802885 | ||
|short_description=p2@Gak | |short_description=p2@Gak | ||
}} | }} |
Latest revision as of 14:39, 1 October 2015
Short description: | p2@Gak |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gak_5end |
Coexpression cluster: | MCL_coexpression_mm9:993 |
Association with transcript: | 31bp_to_ENSMUST00000046603, ENSMUST00000112579, ENSMUST00000135225, ENSMUST00000145467, NM_153569, uc008yoh.1, uc008yoi.1, uc008yoj.1, uc008yok.1, uc008yol.1_5end |
EntrezGene: | Gak |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestine | 8.31e-11 | 31 |
pharynx | 2.68e-10 | 24 |
upper respiratory tract | 2.68e-10 | 24 |
chordate pharynx | 2.68e-10 | 24 |
pharyngeal arch system | 2.68e-10 | 24 |
pharyngeal region of foregut | 2.68e-10 | 24 |
thymus | 4.44e-10 | 23 |
neck | 4.44e-10 | 23 |
respiratory system epithelium | 4.44e-10 | 23 |
hemolymphoid system gland | 4.44e-10 | 23 |
pharyngeal epithelium | 4.44e-10 | 23 |
thymic region | 4.44e-10 | 23 |
pharyngeal gland | 4.44e-10 | 23 |
entire pharyngeal arch endoderm | 4.44e-10 | 23 |
thymus primordium | 4.44e-10 | 23 |
early pharyngeal endoderm | 4.44e-10 | 23 |
gland of gut | 6.65e-10 | 24 |
endoderm-derived structure | 2.25e-08 | 118 |
endoderm | 2.25e-08 | 118 |
presumptive endoderm | 2.25e-08 | 118 |
gastrointestinal system | 5.93e-08 | 47 |
segment of respiratory tract | 8.41e-08 | 27 |
digestive system | 8.77e-08 | 116 |
digestive tract | 8.77e-08 | 116 |
primitive gut | 8.77e-08 | 116 |
mixed endoderm/mesoderm-derived structure | 1.16e-07 | 35 |
mucosa | 2.05e-07 | 15 |
hemopoietic organ | 2.53e-07 | 29 |
immune organ | 2.53e-07 | 29 |
subdivision of digestive tract | 2.96e-07 | 114 |
intestinal mucosa | 8.95e-07 | 13 |
wall of intestine | 8.95e-07 | 13 |
gastrointestinal system mucosa | 8.95e-07 | 13 |