FFCP PHASE1:Mm9::chr9:69885903..69885916,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=72077 | |EntrezGene=72077 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=104 | |||
|TSSclassifier=NA | |||
|UniProt=Q5JCT0 | |UniProt=Q5JCT0 | ||
|association_with_transcript=-8bp_to_ENSMUST00000034751,NM_028087,uc009qnt.1_5end | |association_with_transcript=-8bp_to_ENSMUST00000034751,NM_028087,uc009qnt.1_5end | ||
|cluster_id=chr9:69885903..69885916,- | |||
|description=CAGE_peak_2_at_Gcnt3_5end | |description=CAGE_peak_2_at_Gcnt3_5end | ||
|id=chr9:69885903..69885916,- | |id=chr9:69885903..69885916,- | ||
|ontology_enrichment_celltype=CL:0000239!7.74e-09!6;CL:0000677!7.74e-09!6;CL:0000212!7.74e-09!6;CL:0000584!7.74e-09!6;CL:0002563!7.14e-08!9;CL:0002251!7.14e-08!9;CL:0000075!1.68e-07!7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,4.12e-10,6;CL:0000677,4.12e-10,6;CL:0000584,4.12e-10,6;CL:0000075,9.62e-09,7;CL:0002563,6.55e-07,9;CL:0002251,6.55e-07,9 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!2.58e-28!59;UBERON:0000160!1.59e-22!43;UBERON:0000344!1.88e-15!15;UBERON:0001242!5.69e-12!13;UBERON:0000060!5.69e-12!13;UBERON:0001262!5.69e-12!13;UBERON:0004786!5.69e-12!13;UBERON:0004119!3.10e-11!130;UBERON:0000925!3.10e-11!130;UBERON:0006595!3.10e-11!130;UBERON:0001007!1.20e-10!128;UBERON:0001555!1.20e-10!128;UBERON:0007026!1.20e-10!128;UBERON:0004923!2.83e-10!24;UBERON:0004921!5.00e-09!126;UBERON:0004185!5.00e-09!126;UBERON:0003350!7.14e-08!9;UBERON:0004808!7.14e-08!9;UBERON:0001277!7.14e-08!9;UBERON:0000331!1.58e-07!3;UBERON:0002116!1.58e-07!3;UBERON:0001204!1.58e-07!3;UBERON:0001168!1.58e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.57e-23,31;UBERON:0000344,3.10e-20,15;UBERON:0000331,1.49e-19,3;UBERON:0002116,1.49e-19,3;UBERON:0001204,1.49e-19,3;UBERON:0001168,1.49e-19,3;UBERON:0005409,4.51e-18,47;UBERON:0001242,3.08e-17,13;UBERON:0001262,3.08e-17,13;UBERON:0004786,3.08e-17,13;UBERON:0002108,7.90e-15,4;UBERON:0001155,9.45e-14,2;UBERON:0000059,9.45e-14,2;UBERON:0004923,1.84e-12,24;UBERON:0001153,4.65e-08,1;UBERON:0001045,4.65e-08,1;UBERON:0001007,7.76e-08,116;UBERON:0001555,7.76e-08,116;UBERON:0007026,7.76e-08,116;UBERON:0004119,1.12e-07,118;UBERON:0000925,1.12e-07,118;UBERON:0006595,1.12e-07,118;UBERON:0003350,6.55e-07,9;UBERON:0004808,6.55e-07,9;UBERON:0001277,6.55e-07,9 | |||
|phase1_expression=0,1.04692622291808,0.454999239389536,0,0.500895729946347,1.84667199103079,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91990907352088,0.91763712426868,0,1.29228598847722,0.861884930743556,4.56056206695297,1.00812051903972,1.77384408524244,0,0,0,0,0,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.775258509631,0,0,1.02182822083437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229902104433473,0,0,0,0,0,0,0,0,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.793351699990633,0,0,0,0.201683524623343,0.667134131534611,0.380451252225118,0.949058123089023,0,1.00534083520108,0.795825888164603,0.58489226135736,0.898819408654221,1.08069024937347,1.39398891278057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0,0,0,0,0,0,0.874442509889552,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0.203319467126849,0.216010681643603,0,0.218362563746178,0.404593039154462,0.165306911450672,0.26175594198403,9.20266310371729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0.206035057238894,0,0,0,0,0,0.128050304809739,0,0,0,0,0,0,0,0,0,0,0.0941093804153306,0,0,0,0,0,0,0,0.409231043169689,0,0,0,0.233931608445408,0,0,0,0 | |phase1_expression=0,1.04692622291808,0.454999239389536,0,0.500895729946347,1.84667199103079,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91990907352088,0.91763712426868,0,1.29228598847722,0.861884930743556,4.56056206695297,1.00812051903972,1.77384408524244,0,0,0,0,0,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.775258509631,0,0,1.02182822083437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229902104433473,0,0,0,0,0,0,0,0,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.793351699990633,0,0,0,0.201683524623343,0.667134131534611,0.380451252225118,0.949058123089023,0,1.00534083520108,0.795825888164603,0.58489226135736,0.898819408654221,1.08069024937347,1.39398891278057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0,0,0,0,0,0,0.874442509889552,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0.203319467126849,0.216010681643603,0,0.218362563746178,0.404593039154462,0.165306911450672,0.26175594198403,9.20266310371729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0.206035057238894,0,0,0,0,0,0.128050304809739,0,0,0,0,0,0,0,0,0,0,0.0941093804153306,0,0,0,0,0,0,0,0.409231043169689,0,0,0,0.233931608445408,0,0,0,0 | ||
|short_description=p2@Gcnt3 | |short_description=p2@Gcnt3 | ||
}} | }} |
Latest revision as of 01:44, 27 September 2015
Short description: | p2@Gcnt3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gcnt3_5end |
Coexpression cluster: | MCL_coexpression_mm9:104 |
Association with transcript: | -8bp_to_ENSMUST00000034751, NM_028087, uc009qnt.1_5end |
EntrezGene: | Gcnt3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 4.12e-10 | 6 |
gut absorptive cell | 4.12e-10 | 6 |
enterocyte | 4.12e-10 | 6 |
columnar/cuboidal epithelial cell | 9.62e-09 | 7 |
intestinal epithelial cell | 6.55e-07 | 9 |
epithelial cell of alimentary canal | 6.55e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.57e-23 | 31 |
mucosa | 3.10e-20 | 15 |
ileal mucosa | 1.49e-19 | 3 |
ileum | 1.49e-19 | 3 |
mucosa of small intestine | 1.49e-19 | 3 |
wall of small intestine | 1.49e-19 | 3 |
gastrointestinal system | 4.51e-18 | 47 |
intestinal mucosa | 3.08e-17 | 13 |
wall of intestine | 3.08e-17 | 13 |
gastrointestinal system mucosa | 3.08e-17 | 13 |
small intestine | 7.90e-15 | 4 |
colon | 9.45e-14 | 2 |
large intestine | 9.45e-14 | 2 |
organ component layer | 1.84e-12 | 24 |
caecum | 4.65e-08 | 1 |
midgut | 4.65e-08 | 1 |
digestive system | 7.76e-08 | 116 |
digestive tract | 7.76e-08 | 116 |
primitive gut | 7.76e-08 | 116 |
endoderm-derived structure | 1.12e-07 | 118 |
endoderm | 1.12e-07 | 118 |
presumptive endoderm | 1.12e-07 | 118 |
epithelium of mucosa | 6.55e-07 | 9 |
gastrointestinal system epithelium | 6.55e-07 | 9 |
intestinal epithelium | 6.55e-07 | 9 |