FFCP PHASE1:Mm9::chr8:86239090..86239103,+: Difference between revisions
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{{FFCP|EntrezGene=68278|HGNC=|MCL_coexpression_id=2397|UniProt=Q8VDW0,Q3TB18|association_with_transcript=14bp_to_ENSMUST00000019576,NM_197982,uc009mla.2,uc009mlb.2_5end|description=CAGE_peak_3_at_Ddx39_5end|id=chr8:86239090..86239103,+|ontology_enrichment_celltype=CL:0000063!3.29e-12!66;CL:0000988!8.73e-12!32;CL:0002032!8.73e-12!32;CL:0000037!8.73e-12!32;CL:0000566!8.73e-12!32;CL:0000837!8.73e-12!32;CL:0000219!4.11e-10!54;CL:0002320!4.69e-10!46;CL:0000134!4.69e-10!46;CL:0002031!2.00e-09!25;CL:0000838!6.08e-07!12;CL:0000144!8.72e-07!121;CL:0000012!8.72e-07!121|ontology_enrichment_celltype_v019_2=CL:0000988,6.53e-12,32;CL:0002032,6.53e-12,32;CL:0000037,6.53e-12,32;CL:0000837,6.53e-12,32;CL:0002320,2.34e-10,46;CL:0000134,2.34e-10,46;CL:0000219,2.80e-10,54;CL:0002031,1.73e-09,25;CL:0000838,4.26e-07,12;CL:0000542,7.26e-07,13;CL:0000051,7.26e-07,13|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!1.57e-12!48;UBERON:0002405!6.13e-12!70;UBERON:0002390!7.64e-12!45;UBERON:0003061!7.64e-12!45;UBERON:0002384!4.69e-10!46;UBERON:0003929!2.63e-09!55;UBERON:0004177!3.33e-09!29;UBERON:0004119!1.05e-08!130;UBERON:0000925!1.05e-08!130;UBERON:0006595!1.05e-08!130;UBERON:0001007!1.48e-08!128;UBERON:0001555!1.48e-08!128;UBERON:0007026!1.48e-08!128;UBERON:0005057!2.76e-08!51;UBERON:0004921!4.18e-08!126;UBERON:0004185!4.18e-08!126;UBERON:0004923!4.96e-08!24;UBERON:0005911!5.04e-08!69;UBERON:0000490!4.38e-07!66|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.64e-13,48;UBERON:0002405,2.64e-13,48;UBERON:0002390,1.35e-12,45;UBERON:0003061,1.35e-12,45;UBERON:0004119,6.34e-11,118;UBERON:0000925,6.34e-11,118;UBERON:0006595,6.34e-11,118;UBERON:0001007,9.01e-11,116;UBERON:0001555,9.01e-11,116;UBERON:0007026,9.01e-11,116;UBERON:0002384,2.34e-10,46;UBERON:0004921,2.94e-10,114;UBERON:0004177,4.58e-10,29;UBERON:0005057,4.58e-10,29;UBERON:0003929,7.11e-10,55;UBERON:0000077,1.29e-08,35;UBERON:0005911,2.91e-08,69;UBERON:0004923,5.89e-08,24;UBERON:0000490,2.37e-07,66;UBERON:0002370,2.84e-07,23;UBERON:0000974,2.84e-07,23;UBERON:0004807,2.84e-07,23;UBERON:0005058,2.84e-07,23;UBERON:0003351,2.84e-07,23;UBERON:0009113,2.84e-07,23;UBERON:0003295,2.84e-07,23;UBERON:0009722,2.84e-07,23;UBERON:0005562,2.84e-07,23;UBERON:0007690,2.84e-07,23;UBERON:0000072,3.78e-07,27|phase1_expression=0.480446541314382,8.37540978334467,3.63999391511629,12.7034968748869,6.01074875935617,10.5763941304491,9.57811826441655,4.00282302668886,21.8222519335083,14.5120006319636,24.8266053926982,19.3846346358667,5.30722262786738,3.2345548895029,18.6541466616771,16.1980213911861,23.0855419782288,5.0473946457318,4.11343300817216,4.66828616977833,1.44573593256819,7.4468213400664,8.61959304158487,2.71987118748791,6.42345986988076,5.7423196411502,4.73838195774982,4.95583835177545,3.99049180858385,4.28451220591882,8.20402889424627,15.2407361630311,13.5314253268605,15.8481681015439,9.82095507154334,7.14808975041517,15.7210404322024,2.09265815368454,4.6880120671428,6.80580867165938,6.47054636834116,3.41522742479223,5.34061388334269,0.629484089877886,0.101376931219515,0.550640256485045,2.34717403304412,1.52617609466313,1.5378032791413,0.777719596297134,3.3596741190087,4.31257693094915,7.55021727259814,7.97898356212479,7.39406358113421,1.28629718017973,0.85960031981627,2.06268836910977,1.21389876515759,0.528990979272033,0,6.43804610931351,3.55717918444456,1.7997994345628,1.97773272513395,2.8419204597844,1.19840044207362,0.768436610643109,0.414758449233911,0.810035629990144,1.05162480675691,0.856952953211411,0.220868540951614,1.22490799214954,1.24599112323707,3.67687514644008,0,0.255374676170375,0.153606533256243,0.791317726381163,0.548925861614458,1.56274011167028,0,1.12552522006336,0.30559649555362,0.294628585473668,0.284743361598206,0.745597783301202,7.64834552665159,1.66257432234928,5.79728977403356,0,4.0798280022465,2.15881276655127,1.29955283489534,0.448026887097336,1.26399978118577,1.36344258062446,2.07828803682295,1.06001872353102,0.563373679106722,0,0,0,2.81438353314578,5.57391704045217,3.53867111510348,1.1418387971906,3.10725460376606,0,4.3371331691534,2.13125834818499,1.84492397804847,1.05505848386836,0.470354828542819,1.0053327306374,0.741584903203122,0.722996784599558,4.42305275974937,1.45590164952668,2.87093973998512,7.75800405016355,1.86391761218122,0.292780797011547,0.209446706813455,2.29911349687732,4.07371423320129,5.39912457894067,5.97230067243404,0,0,0.376963056338593,0,0,0.20778804455956,0.162241263067758,1.52759045775474,2.36373244159177,0.505445516867349,0.420883711772948,1.43132487258974,2.5289231487682,1.44049703844279,2.56198190320716,1.49680298132921,2.0498195245576,1.49922759295566,0,4.095791865724,1.51284864134255,1.23165786914764,1.09597866213787,1.11218899690239,0.348252166522167,0.411564272815887,1.59227413454795,9.12877143507205,7.97778512055617,7.95657798307659,1.03562886267751,1.64168241986767,1.44049649168812,0.473489471170421,0.590292695242212,0.771335564436891,1.16266972375204,1.3413670069981,0.9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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=68278 | |||
|HGNC= | |||
|MCL_coexpression_id=2397 | |||
|TSSclassifier=NA | |||
|UniProt=Q8VDW0,Q3TB18 | |||
|association_with_transcript=14bp_to_ENSMUST00000019576,NM_197982,uc009mla.2,uc009mlb.2_5end | |||
|cluster_id=chr8:86239090..86239103,+ | |||
|description=CAGE_peak_3_at_Ddx39_5end | |||
|id=chr8:86239090..86239103,+ | |||
|ontology_enrichment_celltype=CL:0000063!3.29e-12!66;CL:0000988!8.73e-12!32;CL:0002032!8.73e-12!32;CL:0000037!8.73e-12!32;CL:0000566!8.73e-12!32;CL:0000837!8.73e-12!32;CL:0000219!4.11e-10!54;CL:0002320!4.69e-10!46;CL:0000134!4.69e-10!46;CL:0002031!2.00e-09!25;CL:0000838!6.08e-07!12;CL:0000144!8.72e-07!121;CL:0000012!8.72e-07!121 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,6.53e-12,32;CL:0002032,6.53e-12,32;CL:0000037,6.53e-12,32;CL:0000837,6.53e-12,32;CL:0002320,2.34e-10,46;CL:0000134,2.34e-10,46;CL:0000219,2.80e-10,54;CL:0002031,1.73e-09,25;CL:0000838,4.26e-07,12;CL:0000542,7.26e-07,13;CL:0000051,7.26e-07,13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.57e-12!48;UBERON:0002405!6.13e-12!70;UBERON:0002390!7.64e-12!45;UBERON:0003061!7.64e-12!45;UBERON:0002384!4.69e-10!46;UBERON:0003929!2.63e-09!55;UBERON:0004177!3.33e-09!29;UBERON:0004119!1.05e-08!130;UBERON:0000925!1.05e-08!130;UBERON:0006595!1.05e-08!130;UBERON:0001007!1.48e-08!128;UBERON:0001555!1.48e-08!128;UBERON:0007026!1.48e-08!128;UBERON:0005057!2.76e-08!51;UBERON:0004921!4.18e-08!126;UBERON:0004185!4.18e-08!126;UBERON:0004923!4.96e-08!24;UBERON:0005911!5.04e-08!69;UBERON:0000490!4.38e-07!66 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.64e-13,48;UBERON:0002405,2.64e-13,48;UBERON:0002390,1.35e-12,45;UBERON:0003061,1.35e-12,45;UBERON:0004119,6.34e-11,118;UBERON:0000925,6.34e-11,118;UBERON:0006595,6.34e-11,118;UBERON:0001007,9.01e-11,116;UBERON:0001555,9.01e-11,116;UBERON:0007026,9.01e-11,116;UBERON:0002384,2.34e-10,46;UBERON:0004921,2.94e-10,114;UBERON:0004177,4.58e-10,29;UBERON:0005057,4.58e-10,29;UBERON:0003929,7.11e-10,55;UBERON:0000077,1.29e-08,35;UBERON:0005911,2.91e-08,69;UBERON:0004923,5.89e-08,24;UBERON:0000490,2.37e-07,66;UBERON:0002370,2.84e-07,23;UBERON:0000974,2.84e-07,23;UBERON:0004807,2.84e-07,23;UBERON:0005058,2.84e-07,23;UBERON:0003351,2.84e-07,23;UBERON:0009113,2.84e-07,23;UBERON:0003295,2.84e-07,23;UBERON:0009722,2.84e-07,23;UBERON:0005562,2.84e-07,23;UBERON:0007690,2.84e-07,23;UBERON:0000072,3.78e-07,27 | |||
|phase1_expression=0.480446541314382,8.37540978334467,3.63999391511629,12.7034968748869,6.01074875935617,10.5763941304491,9.57811826441655,4.00282302668886,21.8222519335083,14.5120006319636,24.8266053926982,19.3846346358667,5.30722262786738,3.2345548895029,18.6541466616771,16.1980213911861,23.0855419782288,5.0473946457318,4.11343300817216,4.66828616977833,1.44573593256819,7.4468213400664,8.61959304158487,2.71987118748791,6.42345986988076,5.7423196411502,4.73838195774982,4.95583835177545,3.99049180858385,4.28451220591882,8.20402889424627,15.2407361630311,13.5314253268605,15.8481681015439,9.82095507154334,7.14808975041517,15.7210404322024,2.09265815368454,4.6880120671428,6.80580867165938,6.47054636834116,3.41522742479223,5.34061388334269,0.629484089877886,0.101376931219515,0.550640256485045,2.34717403304412,1.52617609466313,1.5378032791413,0.777719596297134,3.3596741190087,4.31257693094915,7.55021727259814,7.97898356212479,7.39406358113421,1.28629718017973,0.85960031981627,2.06268836910977,1.21389876515759,0.528990979272033,0,6.43804610931351,3.55717918444456,1.7997994345628,1.97773272513395,2.8419204597844,1.19840044207362,0.768436610643109,0.414758449233911,0.810035629990144,1.05162480675691,0.856952953211411,0.220868540951614,1.22490799214954,1.24599112323707,3.67687514644008,0,0.255374676170375,0.153606533256243,0.791317726381163,0.548925861614458,1.56274011167028,0,1.12552522006336,0.30559649555362,0.294628585473668,0.284743361598206,0.745597783301202,7.64834552665159,1.66257432234928,5.79728977403356,0,4.0798280022465,2.15881276655127,1.29955283489534,0.448026887097336,1.26399978118577,1.36344258062446,2.07828803682295,1.06001872353102,0.563373679106722,0,0,0,2.81438353314578,5.57391704045217,3.53867111510348,1.1418387971906,3.10725460376606,0,4.3371331691534,2.13125834818499,1.84492397804847,1.05505848386836,0.470354828542819,1.0053327306374,0.741584903203122,0.722996784599558,4.42305275974937,1.45590164952668,2.87093973998512,7.75800405016355,1.86391761218122,0.292780797011547,0.209446706813455,2.29911349687732,4.07371423320129,5.39912457894067,5.97230067243404,0,0,0.376963056338593,0,0,0.20778804455956,0.162241263067758,1.52759045775474,2.36373244159177,0.505445516867349,0.420883711772948,1.43132487258974,2.5289231487682,1.44049703844279,2.56198190320716,1.49680298132921,2.0498195245576,1.49922759295566,0,4.095791865724,1.51284864134255,1.23165786914764,1.09597866213787,1.11218899690239,0.348252166522167,0.411564272815887,1.59227413454795,9.12877143507205,7.97778512055617,7.95657798307659,1.03562886267751,1.64168241986767,1.44049649168812,0.473489471170421,0.590292695242212,0.771335564436891,1.16266972375204,1.3413670069981,0.934122738937356,0.658239399653922,0.985004784474571,0.486412857275134,0.146199987425332,1.09775057645525,0.134206418760372,0.420579897128254,0.411618449517138,0.660837565967596,3.17340679996253,1.91959425481711,2.09013004674395,3.73715637834071,1.81515172161008,2.00140239460383,1.71203063501303,3.32170343081158,1.81168850196412,1.00534083520108,1.39269530428806,2.53453313254856,0.898819408654221,2.37751854862164,2.38969527905241,3.03468641524931,4.11294645395024,1.1270773567308,1.83286195060783,0.775809948670503,0.911765658574141,1.13825766823663,0.442830443938806,0.31399745568275,0.246794327843601,0.592905254174298,12.346537822991,10.4176267409998,10.3436571697033,8.52012509831712,8.20002343158217,5.85639459097266,4.31544206176216,2.2698931748505,3.0201755450689,1.43768206527355,1.48856379067401,0.624075346229121,1.26289438973556,0.896987067609561,0.482443521363367,0.923765950833023,4.16881105895066,2.28150967018836,3.90413697282933,3.28566347603903,1.17254380209271,1.19021820443007,1.17080188714679,1.41871629695572,1.55025282754142,1.59454768657487,1.63863314715738,1.38147985492716,0.723245292907558,1.50791283939272,1.63171705145613,0.983528546038072,0.551873492609465,0.642202359951168,0,3.11476396215683,0.504941854408746,4.41711507182759,4.29482618726302,1.93881057959519,3.10659437338318,2.00518806674155,1.69845918473299,4.04810701674894,1.75353514746787,2.37172666767914,0.321321316421807,1.13552068166615,0.534196811001766,1.14020871547503,0.824850614862677,0,2.6705869977048,4.23252979750651,1.69744571780308,0.590603785761546,0.307435147943927,1.29214146584111,0.363533729477506,1.42598951353889,0.948110273807448,1.05418608574999,0,0,1.98067203434441,1.29358683782755,0.857348140126369,0,0.178368817602071,0.493647061806363,0.913394847343798,2.81606049676452,1.69465656691056,1.10264199027481,0.65954501176592,0.968786560175433,1.14594557363496,1.19372344003136,2.1338316966858,3.78925087618806,0,10.7648654902647,3.30218988741156,8.33375373163703,12.0555812483002,9.84198439591381,7.54967971581525,2.88963330989554,3.77868921273877,4.42239916174156,3.81868247206045,1.89801596148681,1.82987520414164,2.70013352054503,2.71814784818809,0.87345025498471,1.75323650300267,0.826534557253359,1.04702376793612,2.07383957266869,0.621339313086926,2.81846469342095,1.94371509857172,1.98550188548517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| |||
|short_description=p3@Ddx39 | |||
}} |
Latest revision as of 20:47, 25 September 2015
Short description: | p3@Ddx39 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ddx39_5end |
Coexpression cluster: | MCL_coexpression_mm9:2397 |
Association with transcript: | 14bp_to_ENSMUST00000019576, NM_197982, uc009mla.2, uc009mlb.2_5end |
EntrezGene: | Ddx39 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 6.53e-12 | 32 |
hematopoietic oligopotent progenitor cell | 6.53e-12 | 32 |
hematopoietic stem cell | 6.53e-12 | 32 |
hematopoietic multipotent progenitor cell | 6.53e-12 | 32 |
connective tissue cell | 2.34e-10 | 46 |
mesenchymal cell | 2.34e-10 | 46 |
motile cell | 2.80e-10 | 54 |
hematopoietic lineage restricted progenitor cell | 1.73e-09 | 25 |
lymphoid lineage restricted progenitor cell | 4.26e-07 | 12 |
lymphocyte | 7.26e-07 | 13 |
common lymphoid progenitor | 7.26e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.64e-13 | 48 |
immune system | 2.64e-13 | 48 |
hematopoietic system | 1.35e-12 | 45 |
blood island | 1.35e-12 | 45 |
endoderm-derived structure | 6.34e-11 | 118 |
endoderm | 6.34e-11 | 118 |
presumptive endoderm | 6.34e-11 | 118 |
digestive system | 9.01e-11 | 116 |
digestive tract | 9.01e-11 | 116 |
primitive gut | 9.01e-11 | 116 |
connective tissue | 2.34e-10 | 46 |
subdivision of digestive tract | 2.94e-10 | 114 |
hemopoietic organ | 4.58e-10 | 29 |
immune organ | 4.58e-10 | 29 |
gut epithelium | 7.11e-10 | 55 |
mixed endoderm/mesoderm-derived structure | 1.29e-08 | 35 |
endo-epithelium | 2.91e-08 | 69 |
organ component layer | 5.89e-08 | 24 |
unilaminar epithelium | 2.37e-07 | 66 |
thymus | 2.84e-07 | 23 |
neck | 2.84e-07 | 23 |
respiratory system epithelium | 2.84e-07 | 23 |
hemolymphoid system gland | 2.84e-07 | 23 |
pharyngeal epithelium | 2.84e-07 | 23 |
thymic region | 2.84e-07 | 23 |
pharyngeal gland | 2.84e-07 | 23 |
entire pharyngeal arch endoderm | 2.84e-07 | 23 |
thymus primordium | 2.84e-07 | 23 |
early pharyngeal endoderm | 2.84e-07 | 23 |
segment of respiratory tract | 3.78e-07 | 27 |