FFCP PHASE1:Hg19::chr3:139195350..139195370,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5948 | |EntrezGene=5948 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9920 | |HGNC=9920 | ||
|TSSclassifier=strong | |||
|UniProt=P50120 | |UniProt=P50120 | ||
|association_with_transcript=0bp_to_ENST00000232217,NM_004164,uc003eth.2_5end | |association_with_transcript=0bp_to_ENST00000232217,NM_004164,uc003eth.2_5end | ||
|cluster_id=chr3:139195350..139195370,- | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_1_at_RBP2_5end | |description=CAGE_peak_1_at_RBP2_5end | ||
|id=chr3:139195350..139195370,- | |id=chr3:139195350..139195370,- | ||
|ontology_enrichment_celltype=CL:0002322!5.98e-15!5 | |ontology_enrichment_celltype=CL:0002322!5.98e-15!5 | ||
|ontology_enrichment_celltype_v019=CL:0002322;2.00e-16;5!CL:0002563;3.70e-10;4!CL:0000148;1.71e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.94e-16,5;CL:0002563,3.62e-10,4;CL:0000148,1.69e-08,10;CL:0000541,1.69e-08,10 | |||
|ontology_enrichment_development_v019=UBERON:0000358;1.57e-10;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:178;3.78e-10;1!DOID:326;3.78e-10;1!DOID:3978;3.78e-10;1!DOID:3394;3.78e-10;1!DOID:5844;3.78e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:178,4.33e-10,1;DOID:326,4.33e-10,1;DOID:3978,4.33e-10,1;DOID:3394,4.33e-10,1;DOID:5844,4.33e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0005409!4.49e-14!35;UBERON:0000160!1.27e-12!27;UBERON:0001052!2.02e-11!4;UBERON:0000059!6.76e-11!11;UBERON:0004921!6.80e-10!129;UBERON:0004185!6.80e-10!129;UBERON:0004907!3.19e-09!5;UBERON:0001007!1.78e-08!155;UBERON:0001555!1.78e-08!155;UBERON:0007026!1.78e-08!155;UBERON:0004119!2.11e-07!169;UBERON:0000925!2.11e-07!169;UBERON:0006595!2.11e-07!169 | |ontology_enrichment_uberon=UBERON:0005409!4.49e-14!35;UBERON:0000160!1.27e-12!27;UBERON:0001052!2.02e-11!4;UBERON:0000059!6.76e-11!11;UBERON:0004921!6.80e-10!129;UBERON:0004185!6.80e-10!129;UBERON:0004907!3.19e-09!5;UBERON:0001007!1.78e-08!155;UBERON:0001555!1.78e-08!155;UBERON:0007026!1.78e-08!155;UBERON:0004119!2.11e-07!169;UBERON:0000925!2.11e-07!169;UBERON:0006595!2.11e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;3.48e-40;17!UBERON:0005409;1.53e-38;22!UBERON:0004921;2.11e-23;33!UBERON:0001052;7.98e-21;4!UBERON:0000059;1.13e-20;11!UBERON:0000922;8.85e-18;49!UBERON:0002108;1.20e-17;4!UBERON:0004907;8.66e-17;5!UBERON:0007029;2.18e-10;1!UBERON:0001242;3.70e-10;4!UBERON:0001262;3.70e-10;4!UBERON:0004786;3.70e-10;4!UBERON:0004808;3.70e-10;4!UBERON:0001277;3.70e-10;4!UBERON:0001155;6.38e-10;9!UBERON:0001555;1.93e-09;54!UBERON:0001007;5.65e-08;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.18e-40,17;UBERON:0005409,5.88e-34,25;UBERON:0001052,6.96e-21,4;UBERON:0000059,1.05e-20,11;UBERON:0002108,1.20e-17,4;UBERON:0004907,7.77e-17,5;UBERON:0004921,6.52e-11,118;UBERON:0007029,2.28e-10,1;UBERON:0001242,3.62e-10,4;UBERON:0001262,3.62e-10,4;UBERON:0004786,3.62e-10,4;UBERON:0004808,3.62e-10,4;UBERON:0001277,3.62e-10,4;UBERON:0001155,6.29e-10,9;UBERON:0001007,1.72e-08,145;UBERON:0001555,1.72e-08,145;UBERON:0007026,1.72e-08,145;UBERON:0001046,8.15e-08,19;UBERON:0004119,1.70e-07,160;UBERON:0000925,1.70e-07,160;UBERON:0006595,1.70e-07,160 | |||
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|short_description=p1@RBP2 | |short_description=p1@RBP2 | ||
}} | }} |
Latest revision as of 01:52, 25 September 2015
Short description: | p1@RBP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RBP2_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 0bp_to_ENST00000232217, NM_004164, uc003eth.2_5end |
EntrezGene: | RBP2 |
HGNC: | 9920 |
UniProt: | P50120 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.94e-16 | 5 |
intestinal epithelial cell | 3.62e-10 | 4 |
melanocyte | 1.69e-08 | 10 |
melanoblast | 1.69e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
intestine | 3.18e-40 | 17 |
gastrointestinal system | 5.88e-34 | 25 |
rectum | 6.96e-21 | 4 |
large intestine | 1.05e-20 | 11 |
small intestine | 1.20e-17 | 4 |
lower digestive tract | 7.77e-17 | 5 |
subdivision of digestive tract | 6.52e-11 | 118 |
surface | 2.28e-10 | 1 |
intestinal mucosa | 3.62e-10 | 4 |
wall of intestine | 3.62e-10 | 4 |
gastrointestinal system mucosa | 3.62e-10 | 4 |
gastrointestinal system epithelium | 3.62e-10 | 4 |
intestinal epithelium | 3.62e-10 | 4 |
colon | 6.29e-10 | 9 |
digestive system | 1.72e-08 | 145 |
digestive tract | 1.72e-08 | 145 |
primitive gut | 1.72e-08 | 145 |
hindgut | 8.15e-08 | 19 |
endoderm-derived structure | 1.70e-07 | 160 |
endoderm | 1.70e-07 | 160 |
presumptive endoderm | 1.70e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
vascular disease | 4.33e-10 | 1 |
ischemia | 4.33e-10 | 1 |
extrinsic cardiomyopathy | 4.33e-10 | 1 |
myocardial ischemia | 4.33e-10 | 1 |
myocardial infarction | 4.33e-10 | 1 |